Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0894
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po...    29   0.49 
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...    27   3.5  
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...    26   4.6  
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ...    25   8.0  

>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -3

Query: 183 HICVLYLCKQGSRLSFSEQLTNYLTKLTNIVLDNSLDKFLL 61
           HI +LY  + G+    +E L   LT++   VL NS+D F L
Sbjct: 5   HIYILYGSETGTAEGLAESLFRSLTRMGYDVLVNSMDDFNL 45


>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = -3

Query: 411 ETWLTDGILDSELFNEHYTVWRRDRNSDLTGQSRGGGVLIATRKDLKVSLQPSFNSSVE 235
           +T L     DS L N     ++R    D+TG +R    L    +  K +L  S  +S+E
Sbjct: 223 DTHLGGEDFDSRLVNHFIQEFKRKNKKDITGNARAVRRLRTACERAKRTLSSSAQASIE 281


>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = -3

Query: 411 ETWLTDGILDSELFNEHYTVWRRDRNSDLTGQSRGGGVLIATRKDLKVSLQPSFNSSVE 235
           +T L     DS L N     ++R    D+TG +R    L    +  K +L  S  +S+E
Sbjct: 223 DTHLGGEDFDSRLVNHFAQEFKRKNKKDITGNARAVRRLRTACERAKRTLSSSAQASIE 281


>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
           Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 879

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = -3

Query: 510 IHIYYQNVRGLRTKVLEFSRNLLLCSYDVIILTETWLTDGILDSELFNEH 361
           IHI+  N + +       S     C YD  +L   W  DGI++    ++H
Sbjct: 328 IHIFV-NTQPISAFERTLSSKRSSCEYDHFLLLVEWHHDGIVEHVPLDDH 376


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,755,775
Number of Sequences: 5004
Number of extensions: 55437
Number of successful extensions: 162
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)