Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0894
         (704 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY180919-1|AAN87272.1|  884|Drosophila melanogaster ORF1 protein.      50   4e-06
AY118793-1|AAM50653.1|  531|Drosophila melanogaster GH16481p pro...    30   3.5  
AF456125-1|AAL57609.1|  832|Drosophila melanogaster reverse tran...    30   3.5  
AE013599-650|AAF59090.1|  531|Drosophila melanogaster CG2062-PA ...    30   3.5  
BT016072-1|AAV36957.1|  756|Drosophila melanogaster LP07359p pro...    29   6.2  
AY051474-1|AAK92898.1|  639|Drosophila melanogaster GH13952p pro...    29   6.2  
AE014134-1876|AAF52942.2|  756|Drosophila melanogaster CG5355-PA...    29   6.2  

>AY180919-1|AAN87272.1|  884|Drosophila melanogaster ORF1 protein.
          Length = 884

 Score = 49.6 bits (113), Expect = 4e-06
 Identities = 48/174 (27%), Positives = 75/174 (43%), Gaps = 9/174 (5%)
 Frame = -3

Query: 522 FLNSIHIYYQNVRGLRTKVLEFSRNLLLCSYDVIILTETWLTDGILDSELFN-EHYTVWR 346
           F+++++I   N R +R K +E  + L      + ++ ETWLT     S+ FN   YT++R
Sbjct: 8   FIDNLNIMAWNARAVRNKRIELIKFLENNHIHIALINETWLTH----SDRFNIPEYTIYR 63

Query: 345 RDRNSDLTGQSRGGGVLIATRKDLKVSLQPSFNSSV-EDLWVTLIVELKRETIKLHICVL 169
            DR      +SRGGGV IA    L     P   S V E++ + +  +       L I  +
Sbjct: 64  NDRK-----ESRGGGVAIAVSNTLIHEQIPCIKSHVIENVGIQINTD---SNSSLKIYSI 115

Query: 168 YLCKQGSR-------LSFSEQLTNYLTKLTNIVLDNSLDKFLLVGDFNLSGITW 28
           Y     S+       LS+       L +   + +      FL+ GDFN     W
Sbjct: 116 YFAGNTSKCIPSSCDLSWDHNHLKSLYRSDLLKISQINGNFLICGDFNSRHRAW 169


>AY118793-1|AAM50653.1|  531|Drosophila melanogaster GH16481p
           protein.
          Length = 531

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -3

Query: 501 YYQNVRGLRTKVLEF--SRNLLLCSYDVIILTETWLTDGILDS 379
           YY N+     K +EF  S   L+   DV  LT  WL  G+L S
Sbjct: 77  YYSNIMVTNPKYMEFILSSQTLISKSDVYDLTHPWLGLGLLTS 119


>AF456125-1|AAL57609.1|  832|Drosophila melanogaster reverse
           transcriptase protein.
          Length = 832

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 32/119 (26%), Positives = 47/119 (39%), Gaps = 8/119 (6%)
 Frame = -3

Query: 360 YTVWRRDRNSDLTGQSRGGGVLIATRKDLKVSLQPSFNSSV-EDLWVTLIVELKRETIKL 184
           YT++R DR      +SRGGGV IA    L     P   S V E++ + +  +       L
Sbjct: 7   YTIYRNDRK-----ESRGGGVAIAVSNTLIHEQIPCIKSHVIENVGIQINTD---SNSSL 58

Query: 183 HICVLYLCKQGSR-------LSFSEQLTNYLTKLTNIVLDNSLDKFLLVGDFNLSGITW 28
            I  +Y     S+       LS+       L +   + +      FL+ GDFN     W
Sbjct: 59  KIYSIYFAGNTSKCIPSSCDLSWDHNHLKSLYRSDLLKISQINGNFLICGDFNSRHRAW 117


>AE013599-650|AAF59090.1|  531|Drosophila melanogaster CG2062-PA
           protein.
          Length = 531

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -3

Query: 501 YYQNVRGLRTKVLEF--SRNLLLCSYDVIILTETWLTDGILDS 379
           YY N+     K +EF  S   L+   DV  LT  WL  G+L S
Sbjct: 77  YYSNIMVTNPKYMEFILSSQTLISKSDVYDLTHPWLGLGLLTS 119


>BT016072-1|AAV36957.1|  756|Drosophila melanogaster LP07359p
           protein.
          Length = 756

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 252 FNSSVEDLWVTLIVELKRETIKLHICV 172
           FN+S ED W TLI E K + +    CV
Sbjct: 362 FNNSAEDKWETLIAEHKSDVLDWVKCV 388


>AY051474-1|AAK92898.1|  639|Drosophila melanogaster GH13952p
           protein.
          Length = 639

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 252 FNSSVEDLWVTLIVELKRETIKLHICV 172
           FN+S ED W TLI E K + +    CV
Sbjct: 323 FNNSAEDKWETLIAEHKSDVLDWVKCV 349


>AE014134-1876|AAF52942.2|  756|Drosophila melanogaster CG5355-PA
           protein.
          Length = 756

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 252 FNSSVEDLWVTLIVELKRETIKLHICV 172
           FN+S ED W TLI E K + +    CV
Sbjct: 362 FNNSAEDKWETLIAEHKSDVLDWVKCV 388


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,872,026
Number of Sequences: 53049
Number of extensions: 563816
Number of successful extensions: 1052
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3108380451
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)