Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0894
(704 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ... 47 1e-05
AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical ... 36 0.037
AF077540-8|AAC26310.2| 683|Caenorhabditis elegans Btb and math ... 32 0.35
Z75710-7|CAN99690.1| 855|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z75710-6|CAB00028.1| 857|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z50177-3|CAA90545.2| 765|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr... 27 9.9
AF067610-1|AAC17538.2| 696|Caenorhabditis elegans Hypothetical ... 27 9.9
>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
protein F21E9.1 protein.
Length = 1170
Score = 47.2 bits (107), Expect = 1e-05
Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
Frame = -3
Query: 519 LNSIHIYYQNVRGLRT--KVLEFSRNLLLCSYDVIILTETWLTDGILDSELFN-EHYTVW 349
+ +I+ NVRG+ K++ D+++LTET+L++ I+ S LFN + +
Sbjct: 314 IKNINFSLANVRGVSALPKIIMLKEFFASSDIDILLLTETFLSN-IVPSSLFNAPNMSFL 372
Query: 348 RRDRNSDLTGQSRGGGVLIATRKDLKVSLQ 259
R DRN +L + GGGV + + L ++L+
Sbjct: 373 RLDRNPELHSKVSGGGVAVMHKSSLNITLR 402
>AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical
protein Y113G7B.12 protein.
Length = 1042
Score = 35.5 bits (78), Expect = 0.037
Identities = 37/156 (23%), Positives = 71/156 (45%), Gaps = 7/156 (4%)
Frame = -3
Query: 492 NVRGLRT--KVLEFSRNLLLCSYDVIILTETWLTDGILDSELFNEHYTVWRRDRNSDLTG 319
NVR + K + L Y +I +TE+WL + + + + ++ R DR+ L
Sbjct: 376 NVRSCKKLEKASQLCAKLHSNDYQIIAVTESWLQESVSSALFTSFGISIHRCDRDVALHT 435
Query: 318 QSRGGGVLIATRKDL---KVSLQPS--FNSSVEDLWVTLIVELKRETIKLHICVLYLCKQ 154
++ GGGV I + L K+ +Q +N ++ ++ ++ V+Y
Sbjct: 436 KNSGGGVAILFKPPLVVTKLDIQQEHHYNGHQSEVLACRVLNPDYPGASFNLVVVYRPPI 495
Query: 153 GSRLSFSEQLTNYLTKLTNIVLDNSLDKFLLVGDFN 46
++S QL +L+ L +S +++L+GDFN
Sbjct: 496 NGKIS---QLIAHLSSF----LPSS--EYVLMGDFN 522
>AF077540-8|AAC26310.2| 683|Caenorhabditis elegans Btb and math
domain containingprotein 47 protein.
Length = 683
Score = 32.3 bits (70), Expect = 0.35
Identities = 16/67 (23%), Positives = 33/67 (49%)
Frame = +2
Query: 110 VR*LVNCSEKDNLEPCLHKYNTHICSLIVSRFNSTMSVTHKSSTDELNDGCKLTFKSLRV 289
V+ ++ ++K + L K + ++ R ++ ++ + DEL CKL FK+ ++
Sbjct: 82 VQKILPLAQKFGSKTVLQKCERFLITISTVRLSTKWNLAKQYGLDELQAHCKLEFKTAQI 141
Query: 290 AIKTPPP 310
K P P
Sbjct: 142 VRKNPQP 148
>Z75710-7|CAN99690.1| 855|Caenorhabditis elegans Hypothetical
protein D1081.7b protein.
Length = 855
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/50 (26%), Positives = 29/50 (58%)
Frame = -3
Query: 285 RKDLKVSLQPSFNSSVEDLWVTLIVELKRETIKLHICVLYLCKQGSRLSF 136
R+++ V + + + + V IVEL+RET++ +Y+ +QG+ + +
Sbjct: 545 REEMDVEKVATMGNILRAVMVAPIVELQRETVRTGSAAVYVYRQGAEVRY 594
>Z75710-6|CAB00028.1| 857|Caenorhabditis elegans Hypothetical
protein D1081.7a protein.
Length = 857
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/50 (26%), Positives = 29/50 (58%)
Frame = -3
Query: 285 RKDLKVSLQPSFNSSVEDLWVTLIVELKRETIKLHICVLYLCKQGSRLSF 136
R+++ V + + + + V IVEL+RET++ +Y+ +QG+ + +
Sbjct: 547 REEMDVEKVATMGNILRAVMVAPIVELQRETVRTGSAAVYVYRQGAEVRY 596
>Z50177-3|CAA90545.2| 765|Caenorhabditis elegans Hypothetical
protein F46G10.5 protein.
Length = 765
Score = 28.7 bits (61), Expect = 4.3
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = -3
Query: 522 FLNSIHIYYQNVRGLR-TKVLEFSRNLLLCS--YDVIILTETWLTDGILDSELFNEH 361
F+ S IY N G T ++ F+ L L Y VI+LT TWL+D L + +EH
Sbjct: 235 FITSFAIY--NFFGYSITPLIIFTPFLALIHGYYTVIMLTHTWLSDSELRRDSRDEH 289
>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
F54B3.1b protein.
Length = 3394
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -3
Query: 243 SVEDLWVTLIVELKRETIKLHICVLY 166
SV D W+ + V+ K I +H C Y
Sbjct: 1750 SVADFWIIISVDYKDHQISVHFCQRY 1775
>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
F54B3.1a protein.
Length = 3396
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -3
Query: 243 SVEDLWVTLIVELKRETIKLHICVLY 166
SV D W+ + V+ K I +H C Y
Sbjct: 1750 SVADFWIIISVDYKDHQISVHFCQRY 1775
>AF067610-1|AAC17538.2| 696|Caenorhabditis elegans Hypothetical
protein F41A4.1 protein.
Length = 696
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +2
Query: 74 SSELSKTMLVSFVR*LVNCSEKDNLEPCLHKYNTHICSLIVSRFNS 211
SS + KT +S L C ++ + LH +T +C L NS
Sbjct: 126 SSFIIKTFSISMEECLSQCQKESSCRAALHNNDTSLCQLSRVSLNS 171
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,960,391
Number of Sequences: 27780
Number of extensions: 294116
Number of successful extensions: 697
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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