Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0894
         (704 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1, ...    30   1.3  
At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein...    30   1.7  
At5g27940.1 68418.m03362 MFP1 attachment factor, putative simila...    29   4.0  
At4g16570.1 68417.m02508 protein arginine N-methyltransferase-re...    29   4.0  
At5g62020.1 68418.m07785 heat shock factor protein, putative (HS...    28   6.9  
At5g45720.1 68418.m05621 hypothetical protein                          27   9.2  
At4g19980.1 68417.m02925 expressed protein  ; expression support...    27   9.2  
At3g26810.1 68416.m03354 transport inhibitor response protein, p...    27   9.2  
At1g16670.1 68414.m01996 protein kinase family protein contains ...    27   9.2  

>At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1,
           Homo sapiens, EMBL:AF026849 h-bcs1, Homo sapiens,
           EMBL:AF026849 h-bcs1, Homo sapiens, EMBL:AF026849
           contains Pfam profile: ATPase family PF00004
           gene_id:K17E7.100 contains Pfam profile: ATPase family
           PF00004
          Length = 533

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 16/160 (10%)
 Frame = -3

Query: 480 LRTKVLEFSRNLLLCSYDVIILTETWLTDGILDSELFNEHYTVWR---RDRNSDLT---G 319
           L TK+   S  L++         + +L+DG + S+++N     WR   R++N+ +    G
Sbjct: 82  LSTKISPNSVRLIMARDPAEKKVKLYLSDGEVVSDVYNGIKLKWRFLARNKNNTMVEEYG 141

Query: 318 QSRGGGVLIATRKDLKVSLQPSFNSSVEDLWVTLI------VELKRETIKLHICVLYLCK 157
           QS  G +    R+ L++S        V + ++  +      V  KR  +K+H C  ++ +
Sbjct: 142 QSYQGNI---QRESLELSFDKKHRDLVVNSYIPYVESKAKEVNNKRRILKMH-CYSHMAQ 197

Query: 156 QGSRLSFSEQLTNYLTKLTNIVLDNS----LDKFLLVGDF 49
               ++F    T + T   N  L  S    LD+F+   DF
Sbjct: 198 TWQSVNFKHPST-FDTMAMNDDLKRSMIEDLDRFVGRKDF 236


>At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein
           contains Pfam domain PF00098: Zinc knuckle
          Length = 831

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 128 CSEKDN-LEPCLHKYNTHICSLIVSRFNSTMSVTHKSSTD 244
           C E D  + PCL   N+ + SL +SRF+S  S   K +++
Sbjct: 473 CGEADGKVSPCLTNRNSGLKSLWISRFSSKGSFPQKKASE 512


>At5g27940.1 68418.m03362 MFP1 attachment factor, putative similar
           to MFP1 attachment factor 1 [Glycine max]
           gi|7546729|gb|AAF63659 similar to MFP1 attachment factor
           1 [Glycine max] gi|7546729|gb|AAF63659
          Length = 157

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = -3

Query: 348 RRDRNSDLTGQSRGGGVLIATRKDLKVSLQPSFNSSVEDLWVTLIVELKRETIK 187
           R D  S++T + + GG+L +     + S     NS ++ L    I+  K  TIK
Sbjct: 33  RSDATSEVTKEEKSGGILFSVWPPCQKSRDYVVNSMIKTLSTDSILSYKYGTIK 86


>At4g16570.1 68417.m02508 protein arginine
           N-methyltransferase-related contains weak similarity to
           protein arginine N-methyltransferase 2 (EC 2.1.1.-)
           (Swiss-Prot:P55345) [Homo sapiens]
          Length = 724

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 158 LHKYNTHICSLIVSRFNSTMSVTHKSSTDELNDG-CKLTFKSLRVAI 295
           +H + +H C+ I+     T S+TH+ +   L+ G   LT    RVAI
Sbjct: 372 VHLHASHTCTNILYNLKKTQSLTHERTHFPLSTGDLHLTLPPERVAI 418


>At5g62020.1 68418.m07785 heat shock factor protein, putative (HSF6)
           / heat shock transcription factor, putative (HTSF6)
           identical to heat shock transcription factor 6 (HSF6)
           SP: Q9SCW4 from [Arabidopsis thaliana] ;contains Pfam
           profile: PF00447 HSF-type DNA-binding domain
          Length = 299

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -3

Query: 123 TNYLTKLTNIVLDNSLDKFLLVGDFNLSGITWLPSN 16
           T +LTK  N+V D+S+D  +   +   S I W P++
Sbjct: 22  TPFLTKTFNLVEDSSIDDVISWNEDGSSFIVWNPTD 57


>At5g45720.1 68418.m05621 hypothetical protein
          Length = 900

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 6/98 (6%)
 Frame = -3

Query: 408 TWLTDGIL----DSELFNEHYTVWRRDRN-SDLTGQSRGGGVLIATRKD-LKVSLQPSFN 247
           TWLT  +L    D +    H +      N + LT       V+  TR+D  K        
Sbjct: 679 TWLTAALLQLAPDKQYLLPHSSSADASFNHTPLTDSDPSNHVVAGTRRDDSKQGFSCKNR 738

Query: 246 SSVEDLWVTLIVELKRETIKLHICVLYLCKQGSRLSFS 133
            SVED+W+ +I     E ++++    +L K+G   S S
Sbjct: 739 PSVEDIWLAVI-----ENVRVNGLREFLYKEGKIFSIS 771


>At4g19980.1 68417.m02925 expressed protein  ; expression supported
           by MPSS
          Length = 127

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 301 TATPRLTRKVTVPIPTPNC 357
           T    +T+K  VP PTPNC
Sbjct: 13  TTATAVTKKSNVPTPTPNC 31


>At3g26810.1 68416.m03354 transport inhibitor response protein,
           putative E3 ubiquitin ligase SCF complex F-box subunit;
           similar to transport inhibitor response 1 GI:2352492
           from [Arabidopsis thaliana]
          Length = 575

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 602 NRVQFRVCVSKVTKPDFVTS 661
           N ++FR+C+ +  KPD VTS
Sbjct: 393 NFIRFRLCILEPNKPDHVTS 412


>At1g16670.1 68414.m01996 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069; similar to
           receptor-like serine/threonine kinase GI:2465923 from
           [Arabidopsis thaliana]
          Length = 390

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -3

Query: 120 NYLTKLTNIVLDNSLDKFLLVGDFNLSGI 34
           N+   + N + +NSLDK LL G +  SGI
Sbjct: 108 NHRILVYNFLENNSLDKTLLAGGYTRSGI 136


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,813,209
Number of Sequences: 28952
Number of extensions: 266107
Number of successful extensions: 625
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)