Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0893
         (646 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33371| Best HMM Match : SRF-TF (HMM E-Value=2.4e-24)                29   2.4  
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)                 29   2.4  
SB_46042| Best HMM Match : Extensin_2 (HMM E-Value=0.39)               29   3.2  
SB_9927| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.5  
SB_902| Best HMM Match : Collagen (HMM E-Value=0.00027)                28   7.5  
SB_28733| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_33371| Best HMM Match : SRF-TF (HMM E-Value=2.4e-24)
          Length = 333

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 331 YIYARTKTILYICMYVYVYMCTL 263
           Y Y  T+   Y+C  VY Y+CTL
Sbjct: 251 YAYLCTRIYAYVCACVYDYVCTL 273


>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
          Length = 291

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 435 YNFELKFHETNKYCLVLKAESKLDLLLFLIR 527
           Y F L FH  N  CL++   SK +  L L R
Sbjct: 122 YRFRLAFHPNNSICLIVIFTSKTNFTLLLKR 152


>SB_46042| Best HMM Match : Extensin_2 (HMM E-Value=0.39)
          Length = 418

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -1

Query: 331 YIYARTKTILYICMYVYVYMCTLDRHNTFKTRRW 230
           Y+Y      +Y+ +YVYVY+      +  + R+W
Sbjct: 272 YVYVYVYVYVYVYVYVYVYVYVYGSASIDRVRKW 305


>SB_9927| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -3

Query: 194 QTNLVEPHCLQSHTQGPVRYIYMCRCSSSREGRLNSQTL 78
           Q + ++ H  Q  T GP   I  CR S    GRL  +TL
Sbjct: 81  QPSALKLHISQLATSGPQALIQACRYSDLGNGRLLCETL 119


>SB_902| Best HMM Match : Collagen (HMM E-Value=0.00027)
          Length = 617

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +3

Query: 477 LVLKAESKLDLLLFLIRPGTILSVCKNVCIHIT*YQN*LLDKNCKFYYHRLIFY 638
           + L + S LDL    + P  +++V   V IH+  Y +      C  Y  RL+FY
Sbjct: 200 VALGSASHLDLQYLFMSPSILVAVGSAVLIHVAFYSS--RTWICSTYSCRLLFY 251


>SB_28733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 83

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 521 HTPRNDPKRLQKCLYTY 571
           H PR D K+  +C+Y+Y
Sbjct: 50  HVPREDSKKAPRCIYSY 66


>SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 331 YIYARTKTILYICMYVYVYM 272
           Y Y  T T +Y+ +YVYVY+
Sbjct: 46  YTYTYTYTYVYVYVYVYVYV 65


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,856,624
Number of Sequences: 59808
Number of extensions: 369519
Number of successful extensions: 814
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)