Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0893
         (646 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    26   0.36 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    26   0.36 
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          22   5.8  
AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.          21   7.7  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   7.7  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = -1

Query: 142  SDIYICVGVRLPGRDASTVKHFIVIEASPPEYRETSSYIQRELS 11
            S  Y C    L GRD   V+  +     PP   ET+    R ++
Sbjct: 882  SGAYFCQASNLYGRDQQLVQLLVQEPPQPPNSLETAMVASRSIN 925


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = -1

Query: 142  SDIYICVGVRLPGRDASTVKHFIVIEASPPEYRETSSYIQRELS 11
            S  Y C    L GRD   V+  +     PP   ET+    R ++
Sbjct: 878  SGAYFCQASNLYGRDQQLVQLLVQEPPQPPNSLETAMVASRSIN 921


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +1

Query: 148 PCVCDCKQCGST 183
           PC C C++C  T
Sbjct: 1   PCYCTCEKCKIT 12


>AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.
          Length = 88

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 499 NWIYYCFSYAPERS 540
           NWI+   S+ PE+S
Sbjct: 67  NWIHVDISFLPEKS 80


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = +1

Query: 148 PCVCDCKQCGSTRFVC 195
           P  C+CK C S    C
Sbjct: 432 PIGCECKTCNSKTKCC 447


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,843
Number of Sequences: 438
Number of extensions: 3841
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)