Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0892
         (503 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    28   0.92 
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    27   2.1  
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ...    25   4.9  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    25   6.5  
SPBC215.04 |git11||heterotrimeric G protein gamma subunit Git11 ...    25   8.5  

>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
            Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 27.9 bits (59), Expect = 0.92
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -3

Query: 135  YRRTTDQRSAHLQLRRHL--VASHEKYCIPANQ 43
            + RTT    AHLQ  R+L  +A  E+  IP NQ
Sbjct: 1226 FPRTTQDNRAHLQAARNLWALAVEERCIIPRNQ 1258


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = -3

Query: 495 WGPVGQCKAFSWDSSLQSGLPLQNNSFSNAISAATKPIYLQDK 367
           W P     A    SSL S  P Q N  +NA+S  T P+Y   K
Sbjct: 378 WLPKRSLSALKKSSSLTSENPFQLNVAANAVS--TIPVYRTTK 418


>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 727

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 139 PPMNISVSPPKVTAAMSSGATRA*RTASPGSPQ 237
           P +++SV+   +T A  +G      T +PGSP+
Sbjct: 7   PNLDVSVTSSLITTAPVTGNAATISTFTPGSPE 39


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 491 VQLDSAKHFHGIHLCSLVYHYRTILFQM 408
           V L +A+HF   H  SL    RTILF +
Sbjct: 107 VNLINARHFMIEHFLSLFAFCRTILFSL 134


>SPBC215.04 |git11||heterotrimeric G protein gamma subunit Git11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 72

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 133 VDPPMNISVSPPKVTAAMSS 192
           +  PM +SV+PPK   ++SS
Sbjct: 27  IPEPMMVSVAPPKANPSVSS 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,043,999
Number of Sequences: 5004
Number of extensions: 38688
Number of successful extensions: 133
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)