Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0892
(503 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1378 + 29705711-29706725,29707139-29707363,29707445-29707554 29 2.1
02_01_0567 - 4168164-4168250,4168672-4168828,4168951-4169090,417... 29 2.1
03_03_0221 - 15557222-15557431,15557665-15557844 29 2.8
07_03_1731 - 29102403-29102720,29103529-29103735,29103937-291052... 28 3.7
05_04_0252 - 19386942-19387048,19388332-19388947 28 4.9
10_08_0190 + 15607241-15607409,15607932-15607990,15608883-156089... 27 6.5
07_01_1125 + 10404789-10404929,10405118-10405291,10405474-10405533 27 6.5
05_07_0200 - 28368890-28369021,28369169-28369303,28369918-283699... 27 6.5
05_03_0635 - 16446805-16447716 27 6.5
03_05_0343 + 23313616-23314059 27 6.5
01_01_0109 + 795842-796065,796086-796302,796480-796533 27 6.5
11_06_0646 + 25855673-25856125,25856885-25857000,25857372-25857855 27 8.6
08_01_0636 - 5533835-5534212 27 8.6
07_03_1152 + 24392765-24392908,24393682-24393899,24394340-243944... 27 8.6
04_04_1163 - 31398565-31398654,31398729-31398812,31398893-313990... 27 8.6
04_04_0795 - 28111155-28111649,28111747-28112405,28112499-281126... 27 8.6
>06_03_1378 + 29705711-29706725,29707139-29707363,29707445-29707554
Length = 449
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 160 SPPKVTAAMSSGATRA*RTASPGSPQCAAPAVS 258
+PP AA S+ A A TA+P + AAPA +
Sbjct: 353 APPAAPAAASTAAPAAASTAAPAAASTAAPAAA 385
>02_01_0567 -
4168164-4168250,4168672-4168828,4168951-4169090,
4170318-4170456,4170562-4170830,4170914-4171000,
4171259-4171327,4171427-4171455,4171544-4171950,
4172906-4172977,4173150-4173221,4173299-4173370,
4173454-4173519,4173717-4173785,4173866-4173995,
4174846-4174975
Length = 664
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +1
Query: 142 PMNISVSPPKVTAAMSSGATRA*RTASPGSPQCAAPAVSPSIST 273
P N S++P ++ +G+T +SP S +P+ SPS S+
Sbjct: 209 PFNTSIAPSASPSSTPTGSTPTQTPSSPSSSGTPSPSSSPSNSS 252
>03_03_0221 - 15557222-15557431,15557665-15557844
Length = 129
Score = 28.7 bits (61), Expect = 2.8
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +1
Query: 109 RTLISCATVDPPMNISVSPPKVTAAMSSGATRA*RTASPGSPQCAAPA 252
R I+ A V+PP + S SPP+ + + + AT A P + A PA
Sbjct: 57 RPTIAIAVVEPPRSSSPSPPQSPSRVPA-ATVVVAVAEPAAAAIAEPA 103
>07_03_1731 - 29102403-29102720,29103529-29103735,29103937-29105210,
29105298-29105734,29106370-29106764,29106921-29107051,
29109034-29109052
Length = 926
Score = 28.3 bits (60), Expect = 3.7
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 3/99 (3%)
Frame = +3
Query: 168 EGDCRDVVRCDQGLENSVTRLAS-VRCPGGLAFDIDRQTC--DWKTNVKNCDQIEKPRKV 338
E D +R + N + R+ + C A ++ Q D + D E +++
Sbjct: 784 ESDLASSLRIQDVMRNEIQRVQDELSCMNHKAKHLELQGLKKDEIISQVQLDFQESAKEI 843
Query: 339 LPILKTDQPICPEGKLALWQRRLHLKKNCSVMVNQTAKM 455
+ T + + E L LWQ L+K S+M N+TA +
Sbjct: 844 SALRGTLKTVTDERDL-LWQEAKQLRKTISIMQNETASL 881
>05_04_0252 - 19386942-19387048,19388332-19388947
Length = 240
Score = 27.9 bits (59), Expect = 4.9
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 172 VTAAMSSGATRA*RTASPGSPQCAAPAVSPSISTVKLVIG 291
+T ++GA A A+P SP AA A +P ++ VIG
Sbjct: 1 MTTGAAAGAAAA-AGAAPASPVAAAAAAAPEVAARDAVIG 39
>10_08_0190 +
15607241-15607409,15607932-15607990,15608883-15608991,
15609394-15609551,15609976-15610044,15610158-15610847,
15611112-15611629,15611725-15611789,15613010-15613089,
15613894-15613998,15614768-15614881,15615029-15615168,
15615257-15615385,15615903-15616055,15616186-15616327
Length = 899
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Frame = -2
Query: 502 ALLGSSWTVQSIFMGFIF-AVW-FTI-TEQFFFKCNLRCHKAN 383
A G+SW ++S +++ ++W TI T FFF C++R + N
Sbjct: 834 AFAGTSWKLESNRSYWVWHSLWHITIYTSSFFFLCSMRINTVN 876
>07_01_1125 + 10404789-10404929,10405118-10405291,10405474-10405533
Length = 124
Score = 27.5 bits (58), Expect = 6.5
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 151 ISVSPPKVTAAMSSGATRA*RTASPGSPQCAAPAVS-PSISTVKLVIGK 294
+ +S P++ A+ +SG + A +A+PG P A+S P +S V K
Sbjct: 37 VRISSPRLRASRNSGYSVANESANPGCPLSQMIAISCPCLSHFSGVASK 85
>05_07_0200 -
28368890-28369021,28369169-28369303,28369918-28369947,
28370019-28370093,28370222-28370333,28370440-28370621,
28370723-28370854,28372193-28373479
Length = 694
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +1
Query: 154 SVSPPKVTAAMSSGATRA*RTASPGSPQCAAPAVSPSISTVKLVI 288
S PP A R RT++P + +APA P + V V+
Sbjct: 336 SAGPPAPPPPPPPAAKRTSRTSTPATTSSSAPASGPCVRRVPEVV 380
>05_03_0635 - 16446805-16447716
Length = 303
Score = 27.5 bits (58), Expect = 6.5
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 136 DPPMNISVSPPKVTAAMSSGAT 201
DPP ++S+SPP AA S +T
Sbjct: 201 DPPTSLSLSPPGAAAAAISAST 222
>03_05_0343 + 23313616-23314059
Length = 147
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 187 SSGATRA*RTASPGSPQCAAPAVSPSISTVKLVI 288
++GAT R G Q AAPAV+ ++ TV +V+
Sbjct: 13 AAGATAGRRVVVGGCQQRAAPAVAAAMVTVAVVV 46
>01_01_0109 + 795842-796065,796086-796302,796480-796533
Length = 164
Score = 27.5 bits (58), Expect = 6.5
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 66 SRVKRQDDDGAGDEPNADQ 122
S +R D+ GAGDEP+ D+
Sbjct: 21 SLTRRNDEPGAGDEPHVDR 39
>11_06_0646 + 25855673-25856125,25856885-25857000,25857372-25857855
Length = 350
Score = 27.1 bits (57), Expect = 8.6
Identities = 19/71 (26%), Positives = 33/71 (46%)
Frame = +3
Query: 171 GDCRDVVRCDQGLENSVTRLASVRCPGGLAFDIDRQTCDWKTNVKNCDQIEKPRKVLPIL 350
GD R +V Q + S+ L + C GG +++ T V ++E +VLP++
Sbjct: 277 GDARMIVWYSQQPQRSMIPLPLISCSGGRGRGVEQPAEQILTVVY---KMEYYLQVLPVM 333
Query: 351 KTDQPICPEGK 383
Q + PE +
Sbjct: 334 ARRQMVIPESE 344
>08_01_0636 - 5533835-5534212
Length = 125
Score = 27.1 bits (57), Expect = 8.6
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +1
Query: 115 LISCATVDPPMNISVSPPKVTAAMSSGATRA*RTASPGSPQCAAPAVSPSISTVKLVIG 291
L SC+ PP +S+ PP V A + R+ R A+ + + SP+ K IG
Sbjct: 48 LASCSRSLPPALLSLPPPPVPATVGVVPKRSKRIAAKLTLAGLSDTTSPAQHNFKRKIG 106
>07_03_1152 +
24392765-24392908,24393682-24393899,24394340-24394454,
24394605-24394694,24394857-24395015,24395462-24395581,
24396173-24396283,24396531-24396615,24397439-24397575
Length = 392
Score = 27.1 bits (57), Expect = 8.6
Identities = 20/67 (29%), Positives = 30/67 (44%)
Frame = +3
Query: 168 EGDCRDVVRCDQGLENSVTRLASVRCPGGLAFDIDRQTCDWKTNVKNCDQIEKPRKVLPI 347
EG D+ R + VT + SVRC L D+Q K + + + +E + V P
Sbjct: 201 EGSLEDLERQIHEVNALVTVVQSVRCQVDLNKIFDQQAYGAKNSSQLQELLEYSKSVPPN 260
Query: 348 LKTDQPI 368
L+ D I
Sbjct: 261 LRHDNSI 267
>04_04_1163 -
31398565-31398654,31398729-31398812,31398893-31399037,
31399118-31399239,31399338-31399376,31399491-31399601,
31399682-31399804,31399946-31400032,31400136-31400207,
31400349-31400621,31400704-31400895,31400988-31401171,
31401339-31401480,31401578-31401821,31401959-31402603,
31403024-31403293
Length = 940
Score = 27.1 bits (57), Expect = 8.6
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 328 HEKFYQS*KRTNLFVLKVNWLCGSGDCI 411
H KF + R ++F ++ NW CG+ C+
Sbjct: 260 HFKFDRFLARGDVFCIRNNWNCGATSCL 287
>04_04_0795 -
28111155-28111649,28111747-28112405,28112499-28112635,
28112747-28113093
Length = 545
Score = 27.1 bits (57), Expect = 8.6
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = +1
Query: 103 MSRTLISCATVDPPMNISVSPPKVTAAMSSGATRA*RTASPGSPQCAAPAVSPSISTVKL 282
MS + S P +S P ++ + + ++RA G+P A+P V ++++V
Sbjct: 1 MSSEVTSVPPTPTPPPVSTPPSQIQSPAAPASSRASPLRGMGTPNIASP-VRKAVASVSG 59
Query: 283 VIGK--RMLRIA 312
+G+ +M R+A
Sbjct: 60 YLGEVGQMTRLA 71
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,120,913
Number of Sequences: 37544
Number of extensions: 281284
Number of successful extensions: 984
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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