Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0892
         (503 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    26   0.19 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.4  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   1.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.4  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   3.2  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   5.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.3  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 26.2 bits (55), Expect = 0.19
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 502 ALLGSSWTVQSIFMGFIFAVWFTITE 425
           ALLG +  +Q +FMG +  + FT+ +
Sbjct: 133 ALLGKTTYMQLVFMGIVELIMFTVNK 158


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 175  TAAMSSGATRA*RTASPGSPQCAAPAVSPSISTVKLVIGK 294
            +AA + G   A   +SPG  + A+PA S + S    ++GK
Sbjct: 904  SAAFAQGFATA--ASSPGLLERASPAFSGTSSPTNSLVGK 941


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 84  DDDGAGDEPNADQLCDGRPAD 146
           DDDG  D+ +  +  +G+PA+
Sbjct: 394 DDDGDDDDDDDVEAANGKPAE 414


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -2

Query: 412 KCNLRCHKANLPSGQIGW 359
           + N+RCH A  P  ++ W
Sbjct: 418 EANIRCHVAGEPLPRVQW 435


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = -2

Query: 484 WTVQSIFMGFIFAVWFTITEQFFFKCNLRCHKANLP 377
           W  + I +  I  VW       F   +L  H+AN P
Sbjct: 136 WVTRRIAVAGIAVVWLLAGLISFVPISLGLHRANEP 171


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 291 KTNVKNCDQIEKPRKVL 341
           ++NV+ C+Q+EK    L
Sbjct: 802 RSNVQQCEQLEKAPNTL 818



 Score = 20.6 bits (41), Expect = 9.6
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 486 VGQCKAFSWDSS 451
           +G+  AF WDSS
Sbjct: 730 IGKLMAFIWDSS 741


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 9/36 (25%), Positives = 18/36 (50%)
 Frame = -2

Query: 406 NLRCHKANLPSGQIGWSVFKIGKTFRGFSI*SQFLT 299
           +L+C  A  P+ Q+ W++        G  +  Q++T
Sbjct: 440 SLKCSAAGNPTPQVTWALDGFALPTNGRFMIGQYVT 475


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 9/36 (25%), Positives = 18/36 (50%)
 Frame = -2

Query: 406 NLRCHKANLPSGQIGWSVFKIGKTFRGFSI*SQFLT 299
           +L+C  A  P+ Q+ W++        G  +  Q++T
Sbjct: 440 SLKCSAAGNPTPQVTWALDGFALPTNGRFMIGQYVT 475


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,137
Number of Sequences: 438
Number of extensions: 2980
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)