Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0890
         (687 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P24646 Cluster: Polyhedrin; n=212; root|Rep: Polyhedrin...   250   2e-65
UniRef50_Q6JPH0 Cluster: Polyhedrin, major occlusion body protei...   146   4e-34
UniRef50_Q03209 Cluster: 61 kDa protein; n=6; Nucleopolyhedrovir...    48   2e-04
UniRef50_A7RV93 Cluster: Predicted protein; n=2; Nematostella ve...    33   6.5  
UniRef50_A5ZNR6 Cluster: Putative uncharacterized protein; n=5; ...    33   8.6  
UniRef50_A1SUA2 Cluster: Metal dependent phosphohydrolase; n=2; ...    33   8.6  

>UniRef50_P24646 Cluster: Polyhedrin; n=212; root|Rep: Polyhedrin -
           Spodoptera littoralis nuclear polyhedrosis virus (SlNPV)
          Length = 249

 Score =  250 bits (612), Expect = 2e-65
 Identities = 109/146 (74%), Positives = 126/146 (86%)
 Frame = +2

Query: 23  TRFVEDSFPIVNDQEVMDVYLVANLKPTRPNRCYKFLAQHALRWEEDYVPHEVIRIVEPS 202
           TRF+EDSFPIVNDQEVMDV+LV N++PTRPNRC++FLAQHALR + +YVPH+VIRIVEPS
Sbjct: 104 TRFMEDSFPIVNDQEVMDVFLVVNMRPTRPNRCFRFLAQHALRCDPEYVPHDVIRIVEPS 163

Query: 203 YVGMNNEYRISLAKKGGGCPIMNIHSEYTNSFESFVNRVIWENFYKPIVYIGTDXXXXXX 382
           YVG NNEYRISLAKKGGGCP+MN+H+EYT SFESF+++VIW NFYKPIVY+GTD      
Sbjct: 164 YVGTNNEYRISLAKKGGGCPVMNLHAEYTTSFESFIDKVIWYNFYKPIVYVGTDSAEEEE 223

Query: 383 XXXXXXXXFKIKEFAPDAPLFTGPAY 460
                   FKIKEFAPDAPL+TGPAY
Sbjct: 224 ILLEVSLVFKIKEFAPDAPLYTGPAY 249


>UniRef50_Q6JPH0 Cluster: Polyhedrin, major occlusion body protein;
           n=4; Nucleopolyhedrovirus|Rep: Polyhedrin, major
           occlusion body protein - Neodiprion lecontii NPV
          Length = 247

 Score =  146 bits (354), Expect = 4e-34
 Identities = 68/145 (46%), Positives = 91/145 (62%), Gaps = 1/145 (0%)
 Frame = +2

Query: 23  TRFVEDSFPIVNDQEVMDVYLVANLKPTRPNRCYKFLAQHALRWEEDYVPHEVIRIVEPS 202
           T F+ED+FPI N QE  DV+L     P + NR Y+FLAQH LR +ED+VP + IR++EP 
Sbjct: 102 TTFIEDTFPINNYQEFTDVFLEIRCTPNKSNRHYRFLAQHGLRMDEDFVPCDTIRVIEPE 161

Query: 203 YVGMNNEYRISLAKKGGGCPIMNIHSEYTN-SFESFVNRVIWENFYKPIVYIGTDXXXXX 379
           Y+   N   +SL K+ GGCP+M I  ++     E FV+R++W +F++PIVYIGTD     
Sbjct: 162 YL-QGNTVSLSLLKRDGGCPMMKIRQQFNELDLEQFVDRILWCHFHRPIVYIGTDSGEEE 220

Query: 380 XXXXXXXXXFKIKEFAPDAPLFTGP 454
                    F IKEFAP+AP   GP
Sbjct: 221 EVFIEASLTFIIKEFAPEAPFVNGP 245


>UniRef50_Q03209 Cluster: 61 kDa protein; n=6;
           Nucleopolyhedrovirus|Rep: 61 kDa protein - Autographa
           californica nuclear polyhedrosis virus (AcMNPV)
          Length = 543

 Score = 48.0 bits (109), Expect = 2e-04
 Identities = 23/26 (88%), Positives = 24/26 (92%)
 Frame = -1

Query: 573 KIIKFNELLKYVQQLSVNQQRTESNA 496
           K  KFNELLKYVQQLSVNQQRTES+A
Sbjct: 518 KDYKFNELLKYVQQLSVNQQRTESSA 543



 Score = 44.0 bits (99), Expect = 0.003
 Identities = 20/33 (60%), Positives = 22/33 (66%)
 Frame = -2

Query: 674 SKTYFYKSIEDLIFKFRYKDAEKSFDFRSNIPP 576
           ++  FYKSIEDLIFKFRYKDAE    F     P
Sbjct: 485 NRNLFYKSIEDLIFKFRYKDAENHLIFALTYHP 517



 Score = 41.5 bits (93), Expect = 0.019
 Identities = 20/40 (50%), Positives = 26/40 (65%)
 Frame = -3

Query: 685 FETNRKPIFTNLLRI*YLNSDTKTLKNHLIFALTYHPKDY 566
           FETNR   + ++  + +     K  +NHLIFALTYHPKDY
Sbjct: 482 FETNRNLFYKSIEDLIF-KFRYKDAENHLIFALTYHPKDY 520


>UniRef50_A7RV93 Cluster: Predicted protein; n=2; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 1118

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 668 TYFYKSIEDLIFKFRYKDAEKSFDFRSNIPP 576
           TYFY SI+D ++ F +  A+   DFR  + P
Sbjct: 565 TYFYTSIKDSVYAFAFNLADSDVDFRRPLRP 595


>UniRef50_A5ZNR6 Cluster: Putative uncharacterized protein; n=5;
           Bacteria|Rep: Putative uncharacterized protein -
           Ruminococcus obeum ATCC 29174
          Length = 227

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = +2

Query: 113 NRCYKFLAQ--HALR-WEEDYVPHEVIRIVEPSYV 208
           NRC++ LA   H LR W ++Y PH    +  P +V
Sbjct: 127 NRCFRILADYLHLLRVWRKEYAPHSPEEVFHPRFV 161


>UniRef50_A1SUA2 Cluster: Metal dependent phosphohydrolase; n=2;
           Proteobacteria|Rep: Metal dependent phosphohydrolase -
           Psychromonas ingrahamii (strain 37)
          Length = 286

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 292 VGVLAVDVHDWAAAALFSQTNSVFVVHAHVGW 197
           VG+L + + DWA A LF  ++++ V     GW
Sbjct: 16  VGILWISLSDWAVALLFQDSDNIIVAQNIKGW 47


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 660,099,647
Number of Sequences: 1657284
Number of extensions: 13025204
Number of successful extensions: 33437
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 32110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33389
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53719013270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)