Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0890
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ...    29   0.48 
SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    27   1.9  
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    27   2.5  
SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr...    27   3.4  
SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual        26   4.4  
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ...    23   5.8  
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    25   7.8  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    25   7.8  

>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
 Frame = -3

Query: 346 DGFVEVLPYDAV-----HKRLERVGVLAVDVHDWAAAALFSQT 233
           DGFV++LPYD V     +  L R+G+ +     W  A  F +T
Sbjct: 247 DGFVKILPYDRVFSDAKNSNLTRIGISSKT--SWCIATSFGET 287


>SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 335

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +2

Query: 80  YLVANLKPTRPNRCYKFLAQHALRWEEDYVPHEVIRIVEPSYV 208
           YL+ +L    PN  Y    Q A +  +DY   E IRI+E   V
Sbjct: 32  YLLRSLLANVPNALYHSQLQAACQKFQDYCDLEEIRIIEAKRV 74


>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -1

Query: 327 SHMTRFTNDSNELVYSLWMFMIGQ 256
           SH  +F ND  E  Y  W F+  Q
Sbjct: 203 SHTYKFVNDKGEFYYCKWHFITNQ 226


>SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 162

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 209 GMNNEYRISLAKKGGGCPIMNIHS 280
           G++NE  I L +K G CP + I+S
Sbjct: 105 GLSNENLIKLTQKSGECPPLYINS 128


>SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -1

Query: 576 LKIIKFNELLKYVQQ 532
           LKIIKFN+L KYV +
Sbjct: 142 LKIIKFNKLAKYVYE 156


>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 23.0 bits (47), Expect(2) = 5.8
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = +2

Query: 5   FCVKLGTRFVEDSFPIVNDQEVMDVYLVANLKPTRPNRCYKFLAQHALR 151
           +C   G + V        D +++ ++    + P  P    KFLA  ALR
Sbjct: 263 YCTGDGHKMVMSIGGSTVDLDLVQIHPTGFVDPKDPTALTKFLAAEALR 311



 Score = 21.0 bits (42), Expect(2) = 5.8
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +2

Query: 161 DYVPHEVIRIVEPSYVGMNN 220
           DYV  E++++  P Y+ +N+
Sbjct: 333 DYVTGEMMKLKSPVYLVLNS 352


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 8/33 (24%), Positives = 19/33 (57%)
 Frame = -3

Query: 187 SDYFVGHVVFFPPKSVLSEELVAPVGACGFEVG 89
           +D   GH +  PP+ +   +++A + +C  ++G
Sbjct: 558 ADLKFGHYMKLPPRIMFYTQMIATIWSCFVQIG 590


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
           kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/53 (26%), Positives = 22/53 (41%)
 Frame = -3

Query: 496 LINVLITMYSVLIRRTSEQRRVWCKLLYFENERNLN*DFLFFGRVCADVNDGF 338
           L N+L+            + R  C LL+F+    L  ++ F   VC  +  GF
Sbjct: 623 LNNILVASLKFYFNLLHRKVRNGCALLHFKETEILEGEWDFLLAVCPHIEHGF 675


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,769,142
Number of Sequences: 5004
Number of extensions: 55521
Number of successful extensions: 131
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)