Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0890
         (687 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12978| Best HMM Match : Flavodoxin_1 (HMM E-Value=3.8e-24)          33   0.22 
SB_13883| Best HMM Match : 7tm_1 (HMM E-Value=6e-08)                   29   4.7  
SB_8479| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.7  
SB_20998| Best HMM Match : Extensin_2 (HMM E-Value=0.002)              28   6.2  
SB_31696| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_12978| Best HMM Match : Flavodoxin_1 (HMM E-Value=3.8e-24)
          Length = 1592

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 668 TYFYKSIEDLIFKFRYKDAEKSFDFRSNIPP 576
           TYFY SI+D ++ F +  A+   DFR  + P
Sbjct: 416 TYFYTSIKDSVYAFAFNLADSDVDFRRPLRP 446


>SB_13883| Best HMM Match : 7tm_1 (HMM E-Value=6e-08)
          Length = 535

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/63 (26%), Positives = 27/63 (42%)
 Frame = +2

Query: 176 EVIRIVEPSYVGMNNEYRISLAKKGGGCPIMNIHSEYTNSFESFVNRVIWENFYKPIVYI 355
           E I +    ++  NN   +   +  GG    +  +E   S E+  N V WEN    + YI
Sbjct: 101 ETINVTGNYWLPSNNVLELKYLRDIGGVTWTDNCAECCLSKETSQNSVTWENLRSEMYYI 160

Query: 356 GTD 364
           G +
Sbjct: 161 GIE 163


>SB_8479| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +3

Query: 81  TSSPTSNPHAPTGATSSSLNTLLGGKKTT--CPTK 179
           T S T  P  PT + +SS  +  GG KTT  C T+
Sbjct: 353 TGSRTRTPPTPTSSRASSRGSARGGAKTTKKCTTR 387


>SB_20998| Best HMM Match : Extensin_2 (HMM E-Value=0.002)
          Length = 765

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 90  PTSNPHAPTGATSSSLNTLLGGKKTTCPT 176
           P S  H+P  +T  S+NT+L  +   CP+
Sbjct: 703 PVSRYHSPRPSTCLSINTILHDQARACPS 731


>SB_31696| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -3

Query: 367 RVCADVNDGFVEVLPYDAVHKRLERVGVLAVDVHDWAAA 251
           R   D + GF+E L Y    KRLE  G L    H+W ++
Sbjct: 326 RSLTDHSKGFIEKLLYKIPSKRLEVAGAL---THEWLSS 361


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,589,587
Number of Sequences: 59808
Number of extensions: 419402
Number of successful extensions: 1064
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)