Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0889
         (589 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   1.9  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   1.9  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   1.9  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   1.9  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    22   3.3  
EF222288-1|ABN79648.1|   73|Tribolium castaneum adipokinetic hor...    21   5.8  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 588 QRTGCCSWAIPCQSADLLLFPLSL 517
           Q TG   W I  Q ADL + P+++
Sbjct: 237 QATGFVVWPIIEQRADLWIIPIAI 260


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 588 QRTGCCSWAIPCQSADLLLFPLSL 517
           Q TG   W I  Q ADL + P+++
Sbjct: 237 QATGFVVWPIIEQRADLWIIPIAI 260


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 588 QRTGCCSWAIPCQSADLLLFPLSL 517
           Q TG   W I  Q ADL + P+++
Sbjct: 237 QATGFVVWPIIEQRADLWIIPIAI 260


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 588 QRTGCCSWAIPCQSADLLLFPLSL 517
           Q TG   W I  Q ADL + P+++
Sbjct: 237 QATGFVVWPIIEQRADLWIIPIAI 260


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -1

Query: 325 RRRPDNIEQNPHVPNLRDPC 266
           + RP       H  NL+DPC
Sbjct: 252 KMRPKRQSSRRHRKNLKDPC 271


>EF222288-1|ABN79648.1|   73|Tribolium castaneum adipokinetic
           hormone 1 protein.
          Length = 73

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 297 TRMFLIYVILAFAQI 253
           +RMFLI V++AF  +
Sbjct: 2   SRMFLIVVLIAFVGV 16


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,326
Number of Sequences: 336
Number of extensions: 3097
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14726181
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)