BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ceN-0889 (589 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 27 2.0 SPCC1322.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 27 2.7 SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|... 26 3.5 SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 26 4.7 SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 25 8.2 SPAC56F8.05c |mug64||conserved fungal protein|Schizosaccharomyce... 25 8.2 >SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2|||Manual Length = 1157 Score = 27.1 bits (57), Expect = 2.0 Identities = 19/68 (27%), Positives = 29/68 (42%) Frame = -1 Query: 487 SPLRYXSGLMLAASSEEFEDKSDDRSSIFTVSWLPSSR*KDSLLPRRDPMHTARRRRPDN 308 S + Y L + S E E+ F SR +++LLPR +P+ R+P Sbjct: 47 SQIEYLQALQMQQSLSESENYLQPNFFPFQSGPFSKSRRENTLLPRLNPLAPIGARQP-- 104 Query: 307 IEQNPHVP 284 NP +P Sbjct: 105 ---NPSIP 109 >SPCC1322.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual Length = 351 Score = 26.6 bits (56), Expect = 2.7 Identities = 11/17 (64%), Positives = 12/17 (70%) Frame = -2 Query: 534 LFPLSLGHTFSKRAPLL 484 L PLS GHT K+ PLL Sbjct: 107 LTPLSFGHTIPKKKPLL 123 >SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr 2|||Manual Length = 463 Score = 26.2 bits (55), Expect = 3.5 Identities = 10/22 (45%), Positives = 15/22 (68%) Frame = -3 Query: 566 GLSPVKVPIFCSFPSRWAILFR 501 G++P +VP+FC+F LFR Sbjct: 435 GINPSQVPVFCAFTKVEIDLFR 456 >SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosaccharomyces pombe|chr 3|||Manual Length = 877 Score = 25.8 bits (54), Expect = 4.7 Identities = 14/38 (36%), Positives = 23/38 (60%) Frame = -1 Query: 490 PSPLRYXSGLMLAASSEEFEDKSDDRSSIFTVSWLPSS 377 PSP++ + ++ + EE D S SS FT+S+ PS+ Sbjct: 513 PSPIKSRNNNQMSFAMEEEADVSQPSSSSFTLSF-PSA 549 >SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosaccharomyces pombe|chr 2|||Manual Length = 658 Score = 25.0 bits (52), Expect = 8.2 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Frame = +3 Query: 237 IKISRVSAQMQGSRRLGTCGFCSML-SGLLRRAVCIGS 347 IK + +QG +L GFC+ + S + +R +G+ Sbjct: 506 IKSDNILLSLQGDIKLTDFGFCAQIDSNMTKRTTMVGT 543 >SPAC56F8.05c |mug64||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 295 Score = 25.0 bits (52), Expect = 8.2 Identities = 11/38 (28%), Positives = 18/38 (47%) Frame = +1 Query: 460 SARTXTAMEKGSPFRKSMAQREGKEQKIGTLTGDSPGA 573 ++ T M G+P + Q E+K+G L G+ A Sbjct: 148 ASEATTKMGAGNPLSSAFGQISVLEEKVGNLQGERDSA 185 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,434,751 Number of Sequences: 5004 Number of extensions: 49351 Number of successful extensions: 120 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 118 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 120 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 254167452 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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