Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0889
         (589 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0491 - 22680011-22680125,22680210-22680307,22680392-226804...    32   0.30 
01_01_1208 + 9733010-9733114,9733920-9733979,9735254-9736280,973...    29   3.6  
06_02_0215 - 13145544-13146482,13148797-13149297                       28   4.8  
04_03_0204 + 12643435-12644001                                         28   6.3  
09_01_0120 + 1839097-1839277,1840315-1840443,1841694-1841833,184...    27   8.4  
08_01_0841 + 8223768-8223871,8227749-8228745,8228779-8228828,822...    27   8.4  
01_05_0110 + 18225431-18226992,18227158-18228132,18228343-182284...    27   8.4  

>01_05_0491 -
           22680011-22680125,22680210-22680307,22680392-22680472,
           22680564-22680677,22680757-22680823,22680947-22681017,
           22681099-22681236,22681324-22681530,22681630-22681773,
           22681856-22682017,22682117-22682173,22682256-22682348,
           22682425-22682542,22682678-22682817,22683031-22683590,
           22683703-22683805
          Length = 755

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = -1

Query: 322 RRPDNIEQNPHVPNLRDPCICADTRDILIKTKNSEIYLSVGLNRPIPASFLYKLYV 155
           R  D  E N  +P L DP      +++LIK  + ++  S+G  RPI A  +Y+  +
Sbjct: 333 RGVDIHENNSQLPGLNDPEAEKQQQELLIKCISEDLGFSIG--RPIAAYLIYRCLI 386


>01_01_1208 +
           9733010-9733114,9733920-9733979,9735254-9736280,
           9736332-9736621
          Length = 493

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -2

Query: 585 RTGCCSW-AIPCQSADLLLFPLSLGHTFSKRAPLLHCGTSP 466
           R+GCC+  A+P  +   L+ P SLG       P   C   P
Sbjct: 301 RSGCCNGVALPFPTGPALVLPWSLGWNSVALMPATQCSMQP 341


>06_02_0215 - 13145544-13146482,13148797-13149297
          Length = 479

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 19/52 (36%), Positives = 28/52 (53%)
 Frame = -1

Query: 571 LLGYPLSKCRSSALSPLVGPYFFETGSPSPLRYXSGLMLAASSEEFEDKSDD 416
           LL Y  +K R+SA   L  PYF E   P P+    GL +  S +E +D +++
Sbjct: 399 LLCYDPTK-RASAADLLNDPYFAEEPLPVPI---EGLQVPESKDEDDDSTEE 446


>04_03_0204 + 12643435-12644001
          Length = 188

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 360 CCLDAILCIPRAGGDRITS 304
           CCL A+LC+PRA    + +
Sbjct: 6   CCLVAVLCLPRASASPVAA 24


>09_01_0120 +
           1839097-1839277,1840315-1840443,1841694-1841833,
           1842291-1842419,1845311-1845463,1845803-1845904,
           1846797-1846976,1847070-1847149,1847413-1847442,
           1847958-1848057
          Length = 407

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 3   VVSGRLLGSCLHYFADHRDCSLSRVINNHH 92
           +V   L G+ LH  A H  CS  +++ +HH
Sbjct: 119 IVFDSLYGTPLHTAAAHGQCSTMKILLDHH 148


>08_01_0841 +
           8223768-8223871,8227749-8228745,8228779-8228828,
           8228896-8230396
          Length = 883

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -2

Query: 435 SKINRTIVLRFSLCLGCPARGRRTRCCLDAILCIPR 328
           +++ +  +LR S         RR RCC+D+ L +P+
Sbjct: 628 TQLGKLQLLRASRRTEDSCHNRRNRCCIDSALTVPK 663


>01_05_0110 +
           18225431-18226992,18227158-18228132,18228343-18228437,
           18228556-18228842
          Length = 972

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/24 (58%), Positives = 15/24 (62%)
 Frame = -2

Query: 540 LLLFPLSLGHTFSKRAPLLHCGTS 469
           LLLF L+LGH     APL   GTS
Sbjct: 4   LLLFALTLGHGARSAAPLPRRGTS 27


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,556,479
Number of Sequences: 37544
Number of extensions: 340598
Number of successful extensions: 860
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)