Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0889
         (589 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54941| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_47507| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_7365| Best HMM Match : ABC_membrane (HMM E-Value=0)                 28   6.5  
SB_59387| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_30064| Best HMM Match : SPC22 (HMM E-Value=5.5)                     27   8.6  
SB_9298| Best HMM Match : rve (HMM E-Value=4.8e-35)                    27   8.6  

>SB_54941| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 134

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 20/58 (34%), Positives = 28/58 (48%)
 Frame = -1

Query: 355 PRRDPMHTARRRRPDNIEQNPHVPNLRDPCICADTRDILIKTKNSEIYLSVGLNRPIP 182
           PR D   T+  R    ++  P +P++  PC  A     L K+      LSVGL +PIP
Sbjct: 30  PRNDTA-TSMSRCDTTVQ--PLLPSISIPCGLAPNGHDLNKSSKKNTPLSVGLTQPIP 84


>SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1066

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 1/94 (1%)
 Frame = -1

Query: 541 SSALSPLVGPYFFETGSPSPLRYXSGLMLA-ASSEEFEDKSDDRSSIFTVSWLPSSR*KD 365
           S + SP+  P+     SP P    S       SS    D S + SS  ++S+ PSS    
Sbjct: 532 SISTSPISNPHPSSNPSPHPSSNPSSEPSPNPSSNPSSDPSPNPSSDPSLSFSPSSSSSP 591

Query: 364 SLLPRRDPMHTARRRRPDNIEQNPHVPNLRDPCI 263
           S+ P  + +    R    N  +NP+  +   P +
Sbjct: 592 SVRPSPNLISNPNRNSNSNSNRNPNPSSNPSPSL 625


>SB_47507| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 917

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 573 CSWAIPCQSADLLLFPLSLGHTFSKRA 493
           C WA P ++ DLLL+ L +  TF + A
Sbjct: 294 CGWAFPQRNRDLLLYNLGILRTFRQFA 320


>SB_7365| Best HMM Match : ABC_membrane (HMM E-Value=0)
          Length = 1301

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = -2

Query: 504 SKRAPLLHCGTSPG*CWQRRLKNSKINRTIVLR--FSLCLGCPARGR 370
           S    +L C T+P   W+ RL   K  R I+    F++ +G    G+
Sbjct: 561 SDNCKILKCSTNPPILWKSRLSRQKKTRRIIAHVFFAVMIGATQLGQ 607


>SB_59387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 806

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = -1

Query: 586 KDRLLLLGYPLSKCRSSALSPLVGPYFFETGSPSPLRYXSGLMLAASSEEFEDKSD 419
           +D+L  LG+    C SS  + +  P   ++ SP  +R  + +   ++SE+F +  D
Sbjct: 598 RDQLFFLGFAQLWCSSSTKNSMHHPLLTDSHSPDRIRVHAAV---SNSEQFAEAYD 650


>SB_30064| Best HMM Match : SPC22 (HMM E-Value=5.5)
          Length = 197

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
 Frame = -1

Query: 391 WLPSSR*KDSLLPRRDPMHTARRRRPDNIEQNPHVPNLRDPC---ICADTRDILIKTKNS 221
           WL     K + L  RD    A R R +++EQ   +     P     C  +R  LI   NS
Sbjct: 12  WLHREDIKPTPLKYRDVWKHALRSRVESVEQRKGLRQANSPAYRHTCCLSRAHLIPIPNS 71

Query: 220 EIYLSV 203
            +Y+ +
Sbjct: 72  IVYIGI 77


>SB_9298| Best HMM Match : rve (HMM E-Value=4.8e-35)
          Length = 1514

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +2

Query: 182  RYGPVQSNREINLGVFSFY*NIPCICANARIT*IRNMRVLFDVIRSPPARGMHRI 346
            +Y P+ +NR+I L   S+  NI   C  +  T + N+ V+  + ++PP      I
Sbjct: 1308 KYMPL-NNRKIKLAYTSYVVNIVLNCLFSPPTILLNIMVILAIYQTPPLHSASNI 1361


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,899,021
Number of Sequences: 59808
Number of extensions: 387702
Number of successful extensions: 870
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)