Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0889
         (589 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC045732-1|AAH45732.1|  209|Homo sapiens LOC339742 protein protein.    29   9.2  
AL360169-1|CAI16559.1| 1543|Homo sapiens RP3-442A17.1 protein.         29   9.2  
AL353800-1|CAI20993.1| 1543|Homo sapiens RP3-442A17.1 protein.         29   9.2  
AF219946-1|AAF87975.1| 1544|Homo sapiens tubby super-family prot...    29   9.2  

>BC045732-1|AAH45732.1|  209|Homo sapiens LOC339742 protein protein.
          Length = 209

 Score = 29.5 bits (63), Expect = 9.2
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
 Frame = -1

Query: 355 PRRDPMHTARRRRPDNIEQNPHVPNL----RDPCICADTR 248
           P+  P    R++ P N    PH P+L    R PC C + R
Sbjct: 145 PKLQPPSVCRQQPPGNSRARPHSPHLGTRARCPCGCGEAR 184


>AL360169-1|CAI16559.1| 1543|Homo sapiens RP3-442A17.1 protein.
          Length = 1543

 Score = 29.5 bits (63), Expect = 9.2
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = -1

Query: 562  YPLSKCRSSALSPLVGPYFFETGSPSPLRYXSGLMLAASSEEFEDKSDDRSSIFT 398
            Y  S+C  +  S   G     T S SPL   S   L +  +   D++D  +S FT
Sbjct: 1035 YTCSQCSGTGPSSQPGASLAHTASASPLASQSSYSLLSPPDSARDRTDYVNSAFT 1089


>AL353800-1|CAI20993.1| 1543|Homo sapiens RP3-442A17.1 protein.
          Length = 1543

 Score = 29.5 bits (63), Expect = 9.2
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = -1

Query: 562  YPLSKCRSSALSPLVGPYFFETGSPSPLRYXSGLMLAASSEEFEDKSDDRSSIFT 398
            Y  S+C  +  S   G     T S SPL   S   L +  +   D++D  +S FT
Sbjct: 1035 YTCSQCSGTGPSSQPGASLAHTASASPLASQSSYSLLSPPDSARDRTDYVNSAFT 1089


>AF219946-1|AAF87975.1| 1544|Homo sapiens tubby super-family protein
            protein.
          Length = 1544

 Score = 29.5 bits (63), Expect = 9.2
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = -1

Query: 562  YPLSKCRSSALSPLVGPYFFETGSPSPLRYXSGLMLAASSEEFEDKSDDRSSIFT 398
            Y  S+C  +  S   G     T S SPL   S   L +  +   D++D  +S FT
Sbjct: 1036 YTCSQCSGTGPSSQPGASLAHTASASPLASQSSYSLLSPPDSARDRTDYVNSAFT 1090


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,426,655
Number of Sequences: 237096
Number of extensions: 1903195
Number of successful extensions: 3254
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3250
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6155099854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)