Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0889
         (589 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g11400.1 68417.m01838 ARID/BRIGHT DNA-binding domain-containi...    29   3.0  
At3g52850.1 68416.m05824 vacuolar sorting receptor, putative nea...    29   3.0  
At3g46220.1 68416.m05003 expressed protein                             28   4.0  
At2g04235.1 68415.m00411 expressed protein weak similarity to ne...    28   4.0  
At2g18220.1 68415.m02123 expressed protein contains Pfam domain ...    27   9.3  

>At4g11400.1 68417.m01838 ARID/BRIGHT DNA-binding domain-containing
           protein / ELM2 domain-containing protein / Myb-like
           DNA-binding domain-containing protein similar to
           BRG1-binding protein ELD/OSA1 [Homo sapiens]
           GI:18568414; contains Pfam profiles PF01388: ARID/BRIGHT
           DNA binding domain, PF01448: ELM2 domain, PF00249:
           Myb-like DNA-binding domain
          Length = 573

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -1

Query: 391 WLPSSR*KDSLLPRRDPMHTARRRRPDNIEQNPHVPNL 278
           WL  +R K+SLL +RD      R  P    QN H P++
Sbjct: 259 WLQVARAKNSLLVQRDNAELRYRYHPFRGHQNIHHPSM 296


>At3g52850.1 68416.m05824 vacuolar sorting receptor, putative nearly
           identical to vacuolar sorting receptor homolog
           (GP:1737218) [Arabidopsis thaliana]
          Length = 623

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 516 GHTFSKRAPLLHCGTSPG*CWQ 451
           G+T  K +  LHCG + G CW+
Sbjct: 456 GYTHCKASGALHCGINNGGCWR 477


>At3g46220.1 68416.m05003 expressed protein
          Length = 530

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = -1

Query: 547 CRSSALSPLVGPYFFETGSPSPLRYXSGLMLAASSEEFEDKSDDRSSIFTVSWLPSS 377
           CRS     L   Y +  G+P    +    M+       ED  +  S I ++S LPSS
Sbjct: 4   CRSLGFLKLCSSYRYPDGTPLAAVFIHSSMIEMLDSATEDAIEQNSWIDSLSVLPSS 60


>At2g04235.1 68415.m00411 expressed protein weak similarity to
           neurofilament protein (GI:161292) [Loligo pealei]; weak
           similarity to Glucoamylase S1/S2 precursor (EC 3.2.1.3)
           (Glucan 1,4-alpha- glucosidase) (1,4-alpha-D-glucan
           glucohydrolase) (Swiss-Prot:P08640) [Saccharomyces
           cerevisiae]
          Length = 1226

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 3/88 (3%)
 Frame = -1

Query: 565 GYPLSKCRSSALSPLVGPYFFETGSPSPLRYXSGLMLAASSEEFE---DKSDDRSSIFTV 395
           G P  +C S AL+P V        + +P++   GL    SS       D SDDR  +   
Sbjct: 519 GIP-DQCSSGALNPAVDT---SDDNRTPVQEKKGLPDQCSSGALSPAVDTSDDRPPVSEK 574

Query: 394 SWLPSSR*KDSLLPRRDPMHTARRRRPD 311
             +P      +L+P  D      RR P+
Sbjct: 575 KGIPDQHSCGALIPAVDISDVFARRSPE 602


>At2g18220.1 68415.m02123 expressed protein contains Pfam domain
           PF03715: Uncharacterised protein family (UPF0120)
          Length = 779

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -1

Query: 454 AASSEEFEDKSDDRSSIFTVSWLPSSR*KDSLLPRRDPMHTARRRR 317
           ++  E+ ED+ +  ++ F  SWLP S  K+   P  +     +R+R
Sbjct: 650 SSDDEDDEDRMEKGAAAFNSSWLPGSDSKEK-EPEEEKTKKKKRKR 694


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,956,003
Number of Sequences: 28952
Number of extensions: 262799
Number of successful extensions: 628
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)