Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0886
         (702 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.)             254   4e-68
SB_45476| Best HMM Match : Clat_adaptor_s (HMM E-Value=0)              34   0.097
SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.39 
SB_42| Best HMM Match : No HMM Matches (HMM E-Value=.)                 31   0.90 
SB_2298| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.1  
SB_13062| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_14872| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  

>SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1378

 Score =  254 bits (623), Expect = 4e-68
 Identities = 124/177 (70%), Positives = 146/177 (82%), Gaps = 3/177 (1%)
 Frame = +3

Query: 51   VLIAATVCTKSGKALVSRQFVEMTKARIEGLLAAFPKLMTGG---RQHTFVETESVRYVY 221
            VL+AA +CTK+GKA++SRQFVEMT++RIEGLL+AFPKLMT G   +QHTFVETESVRYVY
Sbjct: 470  VLLAAAICTKNGKAIISRQFVEMTRSRIEGLLSAFPKLMTSGSSVKQHTFVETESVRYVY 529

Query: 222  QPLDKLYMLLITTKASNILEDLETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAFDEIVA 401
            QPL+KLYMLLITTK SNILEDLETLRLFSRV+PEYC  + E+E+   AF L+FAFDEIVA
Sbjct: 530  QPLEKLYMLLITTKHSNILEDLETLRLFSRVIPEYCRAMEESEIGEHAFELIFAFDEIVA 589

Query: 402  LGYRESVNLAQVRSFVEMDSHEEKIYQAVRQTQXXXXXXXXXXXXXXLQRERLEAAK 572
            LGYRE+VNLAQ+R+F EMDSHEEK++QAVRQTQ              LQ  ++ AAK
Sbjct: 590  LGYRENVNLAQIRTFTEMDSHEEKVFQAVRQTQEREAKEEMKKRAKELQAAKVAAAK 646


>SB_45476| Best HMM Match : Clat_adaptor_s (HMM E-Value=0)
          Length = 141

 Score = 34.3 bits (75), Expect = 0.097
 Identities = 27/128 (21%), Positives = 56/128 (43%), Gaps = 2/128 (1%)
 Frame = +3

Query: 78  KSGKALVSRQFVEMTKARIEGLLAAFPKLMT-GGRQHT-FVETESVRYVYQPLDKLYMLL 251
           ++GK  +++ ++       + L+     L+T    +HT FVE  + + VY+    LY   
Sbjct: 9   RAGKTRLAKWYMNFDDDEKQKLIEEVHALVTVRDAKHTNFVEFRNFKIVYRRYAGLYFCF 68

Query: 252 ITTKASNILEDLETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAFDEIVALGYRESVNLA 431
               + N L  LE +  F  V+ E+   + E +++   + +    DE+   G     + +
Sbjct: 69  CVDVSDNNLYYLEAIHNFVEVLNEFFHNVCELDLVFNFYKVYSVVDEMFLAGELRETSQS 128

Query: 432 QVRSFVEM 455
           +V   + M
Sbjct: 129 KVLKQLNM 136


>SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1304

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 21/96 (21%), Positives = 47/96 (48%)
 Frame = -3

Query: 418  LSLYPRATISSKANSKLKAWFKTSVSVSCTQYSGTTLLKSLNVSRSSRMLLAFVVISNIY 239
            +S  P +T+S   NS +    K + + S T    T+++ + N++    ++L +   + + 
Sbjct: 1066 ISKIPSSTVSLPGNSSIMETVKVTPTSSLTTPQNTSVVFT-NITVQDTLVL-YKSSTPVL 1123

Query: 238  NLSSGW*TYLTDSVSTNVCCRPPVISLGKAASRPSM 131
            N+SSGW + +    +T +      + L ++ S  S+
Sbjct: 1124 NISSGWNSTVVKESTTTLLLSSSSVPLNESTSNASV 1159


>SB_42| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1207

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = -2

Query: 548 LQLLSAFAHAVRCLAFLGLPYGLINLFLVRVHFNKRTDL 432
           L  LS   + +  L F G+PY ++N++LV V + + TD+
Sbjct: 90  LVYLSVNTNLISVLVFYGVPYLVVNMWLVIVTYLQHTDI 128


>SB_2298| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 169

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 21/72 (29%), Positives = 34/72 (47%)
 Frame = +3

Query: 183 HTFVETESVRYVYQPLDKLYMLLITTKASNILEDLETLRLFSRVVPEYCVQLTETEVLNQ 362
           HT   TE  R + + +DK +   +    +  L+D ET  +   +     V LTETE+ + 
Sbjct: 96  HTKGSTEDERLLKKIVDKAFEEKVALTIARYLKDQETFPVEPSIRITVNVDLTETEIHSA 155

Query: 363 AFNLLFAFDEIV 398
           A  +  A D I+
Sbjct: 156 AQVIKNAADSIL 167


>SB_13062| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 389

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +3

Query: 102 RQFVEMTKARIEGLLAAFPKLMTGGRQHTFVETESVRYVYQPLDKLYML 248
           R+ +E  K R+E LL+  PK++     H   ET+S   ++  +D+L  L
Sbjct: 33  RRMLEGLKNRLEALLS--PKIVAAFNNHCLDETKSYVKIFTAIDRLDQL 79


>SB_14872| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1182

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = -3

Query: 427 RLTLSLYPRATISSKANSKLKAWFKTSVSVSCTQYSGTTLLKSLNVSRSS 278
           +LTL+L     + S +N KL++  K SVS+S    S  +  K L V  SS
Sbjct: 605 KLTLNLEKTKCMLSGSNRKLESKIKLSVSISNYNVSNVSNFKYLGVFISS 654


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,548,817
Number of Sequences: 59808
Number of extensions: 438289
Number of successful extensions: 2957
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2954
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)