Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0886
(702 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U21309-2|AAN73882.1| 515|Caenorhabditis elegans Hypothetical pr... 212 2e-55
AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin, mu/m... 37 0.012
U53340-2|AAA96207.1| 142|Caenorhabditis elegans Ap-2 small chai... 34 0.11
AF016440-4|AAB65902.1| 157|Caenorhabditis elegans Adaptin, smal... 32 0.35
U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel t... 31 0.80
DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-t... 31 0.80
AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-t... 31 0.80
AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : short... 30 1.8
AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : short... 30 1.8
U00031-9|AAK18871.1| 470|Caenorhabditis elegans Hypothetical pr... 29 3.2
AF125965-1|AAL38962.1| 339|Caenorhabditis elegans Hypothetical ... 29 4.3
AF039044-13|AAG24128.2| 435|Caenorhabditis elegans Hypothetical... 28 7.4
L26290-1|AAA27981.1| 441|Caenorhabditis elegans clathrin-associ... 27 9.8
>U21309-2|AAN73882.1| 515|Caenorhabditis elegans Hypothetical
protein C13B9.3 protein.
Length = 515
Score = 212 bits (517), Expect = 2e-55
Identities = 105/186 (56%), Positives = 135/186 (72%), Gaps = 6/186 (3%)
Frame = +3
Query: 48 MVLIAATVCTKSGKALVSRQFV-EMTKARIEGLLAAFPKLM-----TGGRQHTFVETESV 209
MVLIAA + +K+GK LV+RQFV +M ++R+EGL+ AFPKL+ RQHTFVET+SV
Sbjct: 1 MVLIAACILSKTGKLLVARQFVNDMMRSRLEGLVDAFPKLIGNEKEAATRQHTFVETDSV 60
Query: 210 RYVYQPLDKLYMLLITTKASNILEDLETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAFD 389
RYVY PLD +Y++L+TTK SNILEDLETLRLF RV+PEYC E E+L F+L+FAFD
Sbjct: 61 RYVYHPLDNIYLVLVTTKNSNILEDLETLRLFVRVIPEYCRSNEEKEILAHDFDLIFAFD 120
Query: 390 EIVALGYRESVNLAQVRSFVEMDSHEEKIYQAVRQTQXXXXXXXXXXXXXXLQRERLEAA 569
E+V LGYRESVNLAQ+R+F EMDSHEE+++ +++ Q L+R + EA
Sbjct: 121 EVVTLGYRESVNLAQIRTFTEMDSHEERVFMQIKEAQEKAAKQAMAEKAKELKRAQKEAL 180
Query: 570 KRGQPP 587
RG P
Sbjct: 181 SRGLKP 186
>AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin,
mu/medium chain (clathrinassociated complex) protein 1
protein.
Length = 426
Score = 37.1 bits (82), Expect = 0.012
Identities = 26/123 (21%), Positives = 53/123 (43%), Gaps = 1/123 (0%)
Frame = +3
Query: 84 GKALVSRQFV-EMTKARIEGLLAAFPKLMTGGRQHTFVETESVRYVYQPLDKLYMLLITT 260
G ++SR + ++ + IE + + G + + + Y Y +Y++ I+
Sbjct: 13 GNVVISRNYRGDVDMSCIEKFMPLLVEKEDEGSASPVLVHQGISYTYIKYMNVYLVTISK 72
Query: 261 KASNILEDLETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAFDEIVALGYRESVNLAQVR 440
K +N++ L L V EY L E V + + FDE++ GY ++ ++
Sbjct: 73 KNTNVILVLSALYKIVEVFCEYFKTLEEEAVRDNFVIIYELFDEMLDFGYPQTTESKILQ 132
Query: 441 SFV 449
F+
Sbjct: 133 EFI 135
>U53340-2|AAA96207.1| 142|Caenorhabditis elegans Ap-2 small chain
(clathrin associatedcomplex) protein 2 protein.
Length = 142
Score = 33.9 bits (74), Expect = 0.11
Identities = 29/133 (21%), Positives = 58/133 (43%), Gaps = 3/133 (2%)
Frame = +3
Query: 78 KSGKALVSRQFVEMTKARIEGLLAAFPKLMT-GGRQHT-FVETESVRYVYQPLDKLYMLL 251
++GK +++ ++ + L+ +T +HT FVE + + VY+ LY +
Sbjct: 10 RAGKTRLAKWYMHFDDDEKQKLIEEVHACVTVRDAKHTNFVEFRNFKIVYRRYAGLYFCI 69
Query: 252 ITTKASNILEDLETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAFDEIVALG-YRESVNL 428
N L LE + F V+ EY + E +++ + + DE+ G RE+
Sbjct: 70 CVDITDNNLYYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQT 129
Query: 429 AQVRSFVEMDSHE 467
++ + + S E
Sbjct: 130 KVLKQLLMLTSLE 142
>AF016440-4|AAB65902.1| 157|Caenorhabditis elegans Adaptin, small
chain (clathrinassociated complex) protein 1 protein.
Length = 157
Score = 32.3 bits (70), Expect = 0.35
Identities = 25/116 (21%), Positives = 49/116 (42%)
Frame = +3
Query: 90 ALVSRQFVEMTKARIEGLLAAFPKLMTGGRQHTFVETESVRYVYQPLDKLYMLLITTKAS 269
A +Q ++ + I +LA PK+ F+E + ++ VY+ LY +
Sbjct: 22 AYPDKQKKKICRELITQILARKPKMCA------FLEYKDLKVVYKRYASLYFCCAIEQND 75
Query: 270 NILEDLETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAFDEIVALGYRESVNLAQV 437
N L LE + + ++ +Y + E +++ F DE + G + + QV
Sbjct: 76 NELITLEVIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLAGEIQETSKKQV 131
>U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 2 protein.
Length = 1785
Score = 31.1 bits (67), Expect = 0.80
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 4/97 (4%)
Frame = -3
Query: 307 LKSLNVSRSSRMLLAFVVISNIYNLSSGW*TYLTDSVSTNVCCRPPVIS----LGKAASR 140
L L SR + L A +V+ N + L W T + C + + L
Sbjct: 1245 LYDLTTSRWFKQLFAVLVVVNSFTLVIPWNVSEEQDRKTFLLCLTVISAICNILFTLECL 1304
Query: 139 PSMRAFVISTNWRDTRALPDFVQTVAAISTILFLYSY 29
M AF +S W+ R DF+ T+ I+ I+F + +
Sbjct: 1305 LKMIAFTLSGFWQSRRNRIDFIITILGINWIVFHFLF 1341
>DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1763
Score = 31.1 bits (67), Expect = 0.80
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 4/97 (4%)
Frame = -3
Query: 307 LKSLNVSRSSRMLLAFVVISNIYNLSSGW*TYLTDSVSTNVCCRPPVIS----LGKAASR 140
L L SR + L A +V+ N + L W T + C + + L
Sbjct: 1223 LYDLTTSRWFKQLFAVLVVVNSFTLVIPWNVSEEQDRKTFLLCLTVISAICNILFTLECL 1282
Query: 139 PSMRAFVISTNWRDTRALPDFVQTVAAISTILFLYSY 29
M AF +S W+ R DF+ T+ I+ I+F + +
Sbjct: 1283 LKMIAFTLSGFWQSRRNRIDFIITILGINWIVFHFLF 1319
>AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1785
Score = 31.1 bits (67), Expect = 0.80
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 4/97 (4%)
Frame = -3
Query: 307 LKSLNVSRSSRMLLAFVVISNIYNLSSGW*TYLTDSVSTNVCCRPPVIS----LGKAASR 140
L L SR + L A +V+ N + L W T + C + + L
Sbjct: 1245 LYDLTTSRWFKQLFAVLVVVNSFTLVIPWNVSEEQDRKTFLLCLTVISAICNILFTLECL 1304
Query: 139 PSMRAFVISTNWRDTRALPDFVQTVAAISTILFLYSY 29
M AF +S W+ R DF+ T+ I+ I+F + +
Sbjct: 1305 LKMIAFTLSGFWQSRRNRIDFIITILGINWIVFHFLF 1341
>AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform b protein.
Length = 435
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/71 (22%), Positives = 34/71 (47%)
Frame = +3
Query: 237 LYMLLITTKASNILEDLETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAFDEIVALGYRE 416
+++ +T + N E L+ F+ + Y +L E V N + DEI+ GY +
Sbjct: 63 VWICAVTRQNVNAAMVFEFLKRFADTMQSYFGKLNEENVKNNFVLIYELLDEILDFGYPQ 122
Query: 417 SVNLAQVRSFV 449
+ + +++F+
Sbjct: 123 NTDPGVLKTFI 133
>AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform a protein.
Length = 441
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/71 (22%), Positives = 34/71 (47%)
Frame = +3
Query: 237 LYMLLITTKASNILEDLETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAFDEIVALGYRE 416
+++ +T + N E L+ F+ + Y +L E V N + DEI+ GY +
Sbjct: 63 VWICAVTRQNVNAAMVFEFLKRFADTMQSYFGKLNEENVKNNFVLIYELLDEILDFGYPQ 122
Query: 417 SVNLAQVRSFV 449
+ + +++F+
Sbjct: 123 NTDPGVLKTFI 133
>U00031-9|AAK18871.1| 470|Caenorhabditis elegans Hypothetical
protein B0361.8 protein.
Length = 470
Score = 29.1 bits (62), Expect = 3.2
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = +3
Query: 207 VRYVYQPLDKLYMLLITTKASNILEDLETLRLFS--RVVPEYCVQLTETEVLN 359
V VY P D L I + A ++LED +T+RL S ++ PE +L + EVL+
Sbjct: 252 VSIVYPPCDVEAFLNIESVAESLLEDTKTVRLLSVGQIRPEKNHKL-QLEVLH 303
>AF125965-1|AAL38962.1| 339|Caenorhabditis elegans Hypothetical
protein H43I07.3 protein.
Length = 339
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Frame = +3
Query: 135 EGLLAAFPKLMTGGRQHTFVETESVRYVYQPLDKL-YMLLITTKASNILEDLET-LRLFS 308
E L +FP ++ R H E+ +VR V + + L + LL+ T A+ ++D + +LF+
Sbjct: 201 EPLDESFPAVIVASRAHLEAESMAVRSVPRTILMLGFHLLVYTFAARTIKDTQCGFKLFT 260
Query: 309 RVV 317
R +
Sbjct: 261 RSI 263
>AF039044-13|AAG24128.2| 435|Caenorhabditis elegans Hypothetical
protein F48G7.12 protein.
Length = 435
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 240 YMLLITTKASNILEDLETLRLFSR 311
Y ++T KA +++EDLE L+SR
Sbjct: 399 YQEILTEKAEHLMEDLERWHLYSR 422
>L26290-1|AAA27981.1| 441|Caenorhabditis elegans
clathrin-associated protein homologueprotein.
Length = 441
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/71 (21%), Positives = 33/71 (46%)
Frame = +3
Query: 237 LYMLLITTKASNILEDLETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAFDEIVALGYRE 416
+++ +T + N L+ F+ + Y +L E V N + DEI+ GY +
Sbjct: 63 VWICAVTRQNVNAAMVFAFLKRFADTMQSYFGKLNEENVKNNFVLIYELLDEILDFGYPQ 122
Query: 417 SVNLAQVRSFV 449
+ + +++F+
Sbjct: 123 NTDPGVLKTFI 133
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,724,531
Number of Sequences: 27780
Number of extensions: 320021
Number of successful extensions: 883
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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