Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0886
(702 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g05010.1 68418.m00532 clathrin adaptor complexes medium subun... 197 7e-51
At2g17380.1 68415.m02007 clathrin assembly protein AP19 identica... 36 0.034
At4g35410.2 68417.m05030 clathrin adaptor complex small chain fa... 34 0.10
At4g24550.2 68417.m03519 clathrin adaptor complexes medium subun... 30 1.3
At4g24550.1 68417.m03518 clathrin adaptor complexes medium subun... 30 1.3
At5g13760.1 68418.m01604 expressed protein similar to unknown pr... 30 1.7
At2g40020.1 68415.m04918 expressed protein 29 2.3
At2g19790.1 68415.m02312 clathrin adaptor complex small chain fa... 29 2.3
At1g10730.1 68414.m01223 clathrin adaptor complexes medium subun... 29 2.3
At4g35410.1 68417.m05029 clathrin adaptor complex small chain fa... 29 3.0
At5g24530.1 68418.m02897 oxidoreductase, 2OG-Fe(II) oxygenase fa... 29 3.9
At1g66330.2 68414.m07533 senescence-associated family protein si... 28 5.2
At1g66330.1 68414.m07532 senescence-associated family protein si... 28 5.2
At1g60780.1 68414.m06842 clathrin adaptor complexes medium subun... 28 5.2
>At5g05010.1 68418.m00532 clathrin adaptor complexes medium
subunit-related contains pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 527
Score = 197 bits (480), Expect = 7e-51
Identities = 89/177 (50%), Positives = 131/177 (74%)
Frame = +3
Query: 48 MVLIAATVCTKSGKALVSRQFVEMTKARIEGLLAAFPKLMTGGRQHTFVETESVRYVYQP 227
MV++AA + KSGK +VSR +V+M++ RIEGLLAAFPKL+ G+QHT++ETE+VRYVYQP
Sbjct: 1 MVVLAAAIVVKSGKVIVSRHYVDMSRIRIEGLLAAFPKLVGMGKQHTYIETENVRYVYQP 60
Query: 228 LDKLYMLLITTKASNILEDLETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAFDEIVALG 407
++ L++LL+TTK SNILEDL TL L S++VPEY + L E + +F L+FAFDE+++LG
Sbjct: 61 IEALFLLLVTTKQSNILEDLATLTLLSKLVPEYSMSLDEEGISRASFELIFAFDEVISLG 120
Query: 408 YRESVNLAQVRSFVEMDSHEEKIYQAVRQTQXXXXXXXXXXXXXXLQRERLEAAKRG 578
++ESV +AQV+ + EM+SHEEK+++ V Q++ + + ++E K G
Sbjct: 121 HKESVTVAQVKQYCEMESHEEKLHKLVMQSKINDTKDVMKRKANEIDKSKIEKNKPG 177
>At2g17380.1 68415.m02007 clathrin assembly protein AP19 identical
to clathrin assembly protein AP19 GI:2231698 from
[Arabidopsis thaliana]
Length = 161
Score = 35.5 bits (78), Expect = 0.034
Identities = 19/82 (23%), Positives = 36/82 (43%)
Frame = +3
Query: 162 LMTGGRQHTFVETESVRYVYQPLDKLYMLLITTKASNILEDLETLRLFSRVVPEYCVQLT 341
L G + F+E + VY+ LY + +A N LE LE + + ++ Y +
Sbjct: 40 LNRGPKLCNFIEWRGYKVVYKRYASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGSVC 99
Query: 342 ETEVLNQAFNLLFAFDEIVALG 407
E +++ + DE++ G
Sbjct: 100 ELDLIFNFHKAYYILDELLIAG 121
>At4g35410.2 68417.m05030 clathrin adaptor complex small chain
family protein contains Pfam profile: PF01217 clathrin
adaptor complex small chain
Length = 162
Score = 33.9 bits (74), Expect = 0.10
Identities = 19/82 (23%), Positives = 35/82 (42%)
Frame = +3
Query: 162 LMTGGRQHTFVETESVRYVYQPLDKLYMLLITTKASNILEDLETLRLFSRVVPEYCVQLT 341
L G + FVE + VY+ LY + + N LE LE + + ++ Y +
Sbjct: 40 LNRGPKLCNFVEWRGYKVVYKRYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVC 99
Query: 342 ETEVLNQAFNLLFAFDEIVALG 407
E +++ + DE++ G
Sbjct: 100 ELDLIFNFHKAYYILDELLIAG 121
>At4g24550.2 68417.m03519 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 451
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Frame = +3
Query: 201 ESVRYVYQPLDKLYMLLITTKASNILEDLETLRLFSRVVPEYCVQLTETEVLNQAFNLLF 380
+ V Y + + LY + T + LE L+ +RV+ +Y L E + + F L++
Sbjct: 55 DGVNYFHVKVVGLYFVATTRVNVSPSLVLELLQRIARVIKDYLGVLNE-DSFRKNFVLVY 113
Query: 381 AF-DEIVALGYRESVNLAQVRSFV 449
DE++ GY ++ + ++S++
Sbjct: 114 ELLDEVIDFGYVQTTSTEVLKSYI 137
>At4g24550.1 68417.m03518 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 380
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Frame = +3
Query: 201 ESVRYVYQPLDKLYMLLITTKASNILEDLETLRLFSRVVPEYCVQLTETEVLNQAFNLLF 380
+ V Y + + LY + T + LE L+ +RV+ +Y L E + + F L++
Sbjct: 55 DGVNYFHVKVVGLYFVATTRVNVSPSLVLELLQRIARVIKDYLGVLNE-DSFRKNFVLVY 113
Query: 381 AF-DEIVALGYRESVNLAQVRSFV 449
DE++ GY ++ + ++S++
Sbjct: 114 ELLDEVIDFGYVQTTSTEVLKSYI 137
>At5g13760.1 68418.m01604 expressed protein similar to unknown
protein (gb AAF63775.1)
Length = 569
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +3
Query: 288 ETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAFDEIVALGY 410
+T +F+ + L T+ N+ F LLF F ++VA+G+
Sbjct: 118 QTRSIFTPTPQQTLASLNSTKYTNKFFLLLFIFHKVVAIGF 158
>At2g40020.1 68415.m04918 expressed protein
Length = 228
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/23 (52%), Positives = 20/23 (86%), Gaps = 1/23 (4%)
Frame = -3
Query: 655 DSDGDDEDIVEL-PKPLPKDICE 590
DSDGDD++I++L P+PL +++ E
Sbjct: 187 DSDGDDDEIIQLTPEPLCEELQE 209
>At2g19790.1 68415.m02312 clathrin adaptor complex small chain
family protein contains Pfam profile: PF01217 clathrin
adaptor complex small chain
Length = 143
Score = 29.5 bits (63), Expect = 2.3
Identities = 20/98 (20%), Positives = 43/98 (43%)
Frame = +3
Query: 162 LMTGGRQHTFVETESVRYVYQPLDKLYMLLITTKASNILEDLETLRLFSRVVPEYCVQLT 341
L +Q +FVE + + VY+ L+ ++ N L LE + L + ++ +
Sbjct: 41 LARNDQQCSFVEHRNYKIVYRRYASLFFMVGVDDDENELAILEFIHLLVETMDKHFGNVC 100
Query: 342 ETEVLNQAFNLLFAFDEIVALGYRESVNLAQVRSFVEM 455
E +++ F +E+V G + A + S +++
Sbjct: 101 ELDIMFHLEKAHFMLEEMVMNGCIVETSKANILSPIQL 138
>At1g10730.1 68414.m01223 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 428
Score = 29.5 bits (63), Expect = 2.3
Identities = 28/136 (20%), Positives = 60/136 (44%), Gaps = 3/136 (2%)
Frame = +3
Query: 84 GKALVSRQFV-EMTKARIEGLLAAFPKLMTGGRQHTFVETES-VRYVYQPLDKLYMLLIT 257
G+ LV R + ++T A+ E + + + V ++ V Y++ +Y+++ +
Sbjct: 15 GRVLVWRDYRGDVTAAQAERFFTKLIETEGDSQSNDPVAYDNGVTYMFVQHSNIYLMIAS 74
Query: 258 TKASNILEDLETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAF-DEIVALGYRESVNLAQ 434
+ N L L V Y +L E E L F +++ DE++ GY +
Sbjct: 75 RQNCNAASLLFFLHRVVDVFKHYFEELEE-ESLRDNFVVVYELLDEMMDFGYPQFTEARI 133
Query: 435 VRSFVEMDSHEEKIYQ 482
+ F++ D++ ++ Q
Sbjct: 134 LSEFIKTDAYRMEVTQ 149
>At4g35410.1 68417.m05029 clathrin adaptor complex small chain
family protein contains Pfam profile: PF01217 clathrin
adaptor complex small chain
Length = 124
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/65 (24%), Positives = 29/65 (44%)
Frame = +3
Query: 162 LMTGGRQHTFVETESVRYVYQPLDKLYMLLITTKASNILEDLETLRLFSRVVPEYCVQLT 341
L G + FVE + VY+ LY + + N LE LE + + ++ Y +
Sbjct: 40 LNRGPKLCNFVEWRGYKVVYKRYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVC 99
Query: 342 ETEVL 356
E +++
Sbjct: 100 ELDLI 104
>At5g24530.1 68418.m02897 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to flavanone 3-hydroxylase
[Persea americana][GI:727410]; contains PF03171
2OG-Fe(II) oxygenase superfamily domain
Length = 341
Score = 28.7 bits (61), Expect = 3.9
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -2
Query: 356 QDFSFCELYTIFWYHSAEESQCLQIF 279
+DF++ E Y FW + ++ CL+ F
Sbjct: 313 KDFTYAEYYKKFWSRNLDQEHCLENF 338
>At1g66330.2 68414.m07533 senescence-associated family protein
similar to senescence-associated protein (GI:12836895)
[Ipomoea batatas]
Length = 417
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = -3
Query: 349 SVSVSCTQYSGTTLLKSLNVSRSSRMLLAFV 257
+++VS + L+KS+N SRS R+LLA+V
Sbjct: 2 ALNVSKVVPNSPILVKSVNASRSRRVLLAYV 32
>At1g66330.1 68414.m07532 senescence-associated family protein
similar to senescence-associated protein (GI:12836895)
[Ipomoea batatas]
Length = 417
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = -3
Query: 349 SVSVSCTQYSGTTLLKSLNVSRSSRMLLAFV 257
+++VS + L+KS+N SRS R+LLA+V
Sbjct: 2 ALNVSKVVPNSPILVKSVNASRSRRVLLAYV 32
>At1g60780.1 68414.m06842 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 428
Score = 28.3 bits (60), Expect = 5.2
Identities = 20/93 (21%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Frame = +3
Query: 207 VRYVYQPLDKLYMLLITTKASNILEDLETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAF 386
V Y++ +Y+++ + + N L L V Y +L E E L F +++
Sbjct: 58 VTYMFVQHSNVYLMIASRQNCNAASLLFFLHRVVDVFKHYFEELEE-ESLRDNFVVVYEL 116
Query: 387 -DEIVALGYRESVNLAQVRSFVEMDSHEEKIYQ 482
DE++ GY + + F++ D++ ++ Q
Sbjct: 117 LDEMMDFGYPQYTEARILSEFIKTDAYRMEVTQ 149
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,866,697
Number of Sequences: 28952
Number of extensions: 296041
Number of successful extensions: 865
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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