Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0885
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    31   0.21 
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma...    30   0.38 
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    28   1.1  
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa...    28   1.1  
SPBC32F12.05c |cwf12||complexed with Cdc5 protein Cwf12 |Schizos...    27   2.6  
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo...    27   2.6  
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|...    26   6.1  
SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces pomb...    25   8.1  

>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 233

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 5/122 (4%)
 Frame = +2

Query: 101 LEANAKEFDSVLKLYPQAIKLKAERKTKRPDELIK--LDNWYQNELPKK--IKSRGKDAH 268
           LE  +K+FD       Q+++   ++  ++ +EL K   D   ++ELP+K   +S  KD H
Sbjct: 13  LEYRSKKFDKK----SQSLEEHEKKVQQKNEELEKKAADKISRDELPEKQLAQSNDKDKH 68

Query: 269 MIHEELVQLMKWKQARGKFYPQLSYLIKVNTPRAVMQETKKA-FRKLPNIESAMTALSNL 445
            +     + +K K+ +GK   +   L   N P+    ET +  F++   + S        
Sbjct: 69  SVSNPPHKTLKSKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKT 128

Query: 446 KG 451
            G
Sbjct: 129 SG 130


>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 176

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 21/81 (25%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
 Frame = +2

Query: 224 NELPKKIKSRGKDAHMIHEELVQLMKWKQARGKFYPQLSYLIKVNTPRAV----MQETKK 391
           +EL   +++ G +A     E++++++     GK Y Q+   ++V T + V    ++E K+
Sbjct: 57  HELRAAMRALGFNAEK--SEVLKILRDFDKTGKGYLQMEDFVRVMTEKIVERDPLEEIKR 114

Query: 392 AFRKLPNIESAMTALSNLKGV 454
           AF    + E+   +L NL+ V
Sbjct: 115 AFELFDDDETGKISLRNLRRV 135


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -2

Query: 364 WRVHFYQIRQLRVEFSSGLFPFHELDKFFVDHV 266
           WR+  Y I QL   F SGL   H  D FF D +
Sbjct: 401 WRMRRYLIIQLIRVFLSGLSTVHFQDFFFADQM 433


>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
           Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 199

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
 Frame = +2

Query: 110 NAKEFD---SVLKLYPQAIKLKAERKTKRPDELIKLDNWYQNE-LP-KKIK 247
           + ++FD    +++  P A  +KAERKTKRP      +    NE +P KK+K
Sbjct: 88  SVEQFDFLQDIVEKVPDAPPIKAERKTKRPRARRAANEGEHNESVPAKKVK 138


>SPBC32F12.05c |cwf12||complexed with Cdc5 protein Cwf12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 217

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 17/67 (25%), Positives = 29/67 (43%)
 Frame = +2

Query: 83  DTSTFFLEANAKEFDSVLKLYPQAIKLKAERKTKRPDELIKLDNWYQNELPKKIKSRGKD 262
           D   +     A+E   V +L+   +    ER+ K+  +  +LD WY   +P   +S  +D
Sbjct: 103 DIDDYRYYGRARELPGVKELFEADMSFIPERQRKQEMQKRRLDAWYFGYIPPAQESLLED 162

Query: 263 AHMIHEE 283
                EE
Sbjct: 163 FEAKIEE 169


>SPAC637.11 |suv3||ATP-dependent RNA helicase
           Suv3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
 Frame = +2

Query: 65  TMATAKDTSTFFLEANAKEFDSVLKLYPQAIKLKAERKTKRPD---ELIKLDN---WY 220
           ++A +K +STF L+   K  D +L  Y + ++ +   +  RPD   +L  L N   WY
Sbjct: 107 SLALSKSSSTFDLQKIKKIHDCLLSEYRKYVRYQERIEETRPDLQKQLTDLKNPIEWY 164


>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 612

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -2

Query: 115 CICLQKESRRVFRGSHCERSKCTTL 41
           C+C+ K +  +F G H    +C +L
Sbjct: 344 CVCVPKATHHIFSGGHDGTIRCWSL 368


>SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 339

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 18/71 (25%), Positives = 34/71 (47%)
 Frame = +2

Query: 224 NELPKKIKSRGKDAHMIHEELVQLMKWKQARGKFYPQLSYLIKVNTPRAVMQETKKAFRK 403
           +ELP+ I  +G +     E+L  L    QA  + Y    +  + +      ++  K F+K
Sbjct: 3   SELPEVI-FKGTE---FEEQLSNLTSDSQANKRVYEDYDFKDETSAKPIPTEKKLKVFKK 58

Query: 404 LPNIESAMTAL 436
             N+E+ ++AL
Sbjct: 59  DDNVETLLSAL 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,061,326
Number of Sequences: 5004
Number of extensions: 64793
Number of successful extensions: 167
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)