Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0885
         (710 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0995 - 29545058-29545204,29545988-29546074,29546166-295463...    96   2e-20
12_02_0683 + 22006770-22006935,22007030-22007274,22007524-220077...    28   8.4  
03_02_0752 - 10922456-10922644,10922719-10922796,10922888-109230...    28   8.4  

>03_05_0995 -
           29545058-29545204,29545988-29546074,29546166-29546361,
           29546686-29546915
          Length = 219

 Score = 96.3 bits (229), Expect = 2e-20
 Identities = 64/202 (31%), Positives = 106/202 (52%), Gaps = 1/202 (0%)
 Frame = +2

Query: 98  FLEANAKEFDSVLKLYPQAIKLKAERKTKRPDELIKLDNWYQNELPKKIKSRGKDAHMIH 277
           F   +A E+ + L  Y +  +L A  K   PD L+++D++Y+ +LP  ++ R  +  +  
Sbjct: 7   FASGDAAEWRAALAAYDR--RLAALGK---PD-LVEVDSFYRRDLPDLLRRRDPEPFLAK 60

Query: 278 EELVQLMKWKQARGKFYPQLSYLIKVNTPRAVMQETKKAFRKLPNIESAMTALSNLKGVG 457
            ELV+L++WK +RGK+ P+L   +K      V   + KAF  LP++  A+T L+ LKGVG
Sbjct: 61  PELVRLLQWKLSRGKWRPRLMDFVKGLEDAVVESASCKAFAALPDLRKAITELTVLKGVG 120

Query: 458 XXXXXXXXXXXXPEIAPFMADECVQAIPEMEGSDYTAREYLNFVSHIRNVCDRLNEEQNG 637
                       P++APFM+DE + A       +YT ++YL F   ++     L+     
Sbjct: 121 PATASAVLAAYAPDVAPFMSDEAMVAALG-NAKEYTLKQYLAFAEKLQTKSKELSS---- 175

Query: 638 CGKKWFPHM-VELALWTHNIVS 700
            G++ F    VE ALW+  + S
Sbjct: 176 -GEEVFTTSDVERALWSSAVAS 196


>12_02_0683 +
           22006770-22006935,22007030-22007274,22007524-22007727,
           22007847-22007939,22008015-22008107,22008196-22008537,
           22008675-22008737,22008812-22008892
          Length = 428

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 385 EKGLPQTAQYRIRDDRSKQSQRRGNGHSISVISCR 489
           E+G+ +T + R+R  R  Q     N  +IS++ CR
Sbjct: 393 EEGVVRTNRKRVRCSRPDQDDSMSNQRNISMVFCR 427


>03_02_0752 -
           10922456-10922644,10922719-10922796,10922888-10923016,
           10923105-10923152,10923243-10923333,10923517-10923648,
           10923869-10924086,10925121-10925271,10925360-10926009,
           10926715-10926786,10926938-10926985,10927105-10927242,
           10927750-10927756,10928064-10928212
          Length = 699

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 124 EFFCICLQKESRRVFRGSHCERSKC 50
           E +C C  K  +  FRG HC +S+C
Sbjct: 474 EKYCGC-SKSCKNRFRGCHCAKSQC 497


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,336,963
Number of Sequences: 37544
Number of extensions: 435711
Number of successful extensions: 1031
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1031
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)