Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0885
         (710 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38771| Best HMM Match : No HMM Matches (HMM E-Value=.)             100   1e-21
SB_56680| Best HMM Match : PTR2 (HMM E-Value=3e-06)                    29   4.9  
SB_10690| Best HMM Match : Pkinase (HMM E-Value=6.4e-08)               28   6.5  
SB_24373| Best HMM Match : Skb1 (HMM E-Value=1.6e-05)                  28   6.5  

>SB_38771| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 267

 Score =  100 bits (240), Expect = 1e-21
 Identities = 53/120 (44%), Positives = 78/120 (65%), Gaps = 1/120 (0%)
 Frame = +2

Query: 101 LEANAKEFDSVLKLYPQAIKLKAERKTK-RPDELIKLDNWYQNELPKKIKSRGKDAHMIH 277
           L+A+A  +  VL LY   +K  A+ K K + ++L++LDNW+Q ELP  I SR ++ ++  
Sbjct: 5   LDASAVRWHEVLDLYGVVVKEMAKGKKKDKAEQLLELDNWFQQELPVSISSR-EEKYLTK 63

Query: 278 EELVQLMKWKQARGKFYPQLSYLIKVNTPRAVMQETKKAFRKLPNIESAMTALSNLKGVG 457
           +EL +LM WK +RGKF P+L  LIK N+   +   TKKAF+ LP++  A+  LS L GVG
Sbjct: 64  DELTKLMTWKLSRGKFRPRLVDLIKSNSDDKIDTLTKKAFKLLPDVIQAIKVLSELNGVG 123



 Score = 30.3 bits (65), Expect = 1.6
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 647 KWFPHMVELALWTHNIVS 700
           KW  H VELALWT+ + S
Sbjct: 133 KWDEHKVELALWTYTVAS 150


>SB_56680| Best HMM Match : PTR2 (HMM E-Value=3e-06)
          Length = 606

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 23/65 (35%), Positives = 31/65 (47%)
 Frame = -3

Query: 456 PTPLRLLRAVIADSILGSLRKAFFVSCITARGVFTFIRYDNCG*NFPLACFHFMSWTSSS 277
           P  LR+ R  IA  IL  + + F    IT   V  F+  DN G +   A    + +TS +
Sbjct: 48  PRKLRMRRLPIACLILAEVCERFAYYGITINFVL-FL--DNFGWSMFAAAGGVLVYTSVA 104

Query: 276 WIMCA 262
           W MCA
Sbjct: 105 WFMCA 109


>SB_10690| Best HMM Match : Pkinase (HMM E-Value=6.4e-08)
          Length = 865

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 343 SDKSEHATSCDARDEKGLPQTAQYRIRDDRSKQSQRRGNGH 465
           S K EH +   +RD+K  P++   R R  R  +SQ RG  +
Sbjct: 150 SRKREHRSRSKSRDKKPKPESPS-RGRSSRRSRSQERGTSN 189


>SB_24373| Best HMM Match : Skb1 (HMM E-Value=1.6e-05)
          Length = 494

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 152 AIKLKAERKTKRPDELIKLDNWYQ 223
           ++K K ER   R D+LIKL  WY+
Sbjct: 426 SLKRKLERVRDREDKLIKLKLWYE 449


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,360,278
Number of Sequences: 59808
Number of extensions: 501018
Number of successful extensions: 1323
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1322
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)