Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0885
         (710 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00036-12|AAK29854.2|  237|Caenorhabditis elegans Hypothetical p...    31   0.81 
AF143152-1|AAD37863.1|  237|Caenorhabditis elegans putative NADH...    31   0.81 
AF100307-5|AAC68933.2|  316|Caenorhabditis elegans Hypothetical ...    29   2.5  
AF099003-3|ABA00149.1|  759|Caenorhabditis elegans Hypothetical ...    29   4.3  
U88170-2|AAB42250.1|  203|Caenorhabditis elegans Hypothetical pr...    28   5.7  
AF003386-14|AAK82896.1|  811|Caenorhabditis elegans Hypothetical...    28   7.6  

>U00036-12|AAK29854.2|  237|Caenorhabditis elegans Hypothetical
           protein R151.6 protein.
          Length = 237

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 23/70 (32%), Positives = 35/70 (50%)
 Frame = -2

Query: 271 HVRIFTPRFDLLGKFILIPIVQFYELIWSFCFTFSF*FNRLRIQL*YTIEFFCICLQKES 92
           H+   TP        ++I   QF+ LI SFCF  SF F+ L   + +T   +C+ L++ S
Sbjct: 30  HLEFVTPFHLYFNWELIIRKYQFWRLITSFCFFGSFGFSFL-FNMIFTYR-YCMMLEEGS 87

Query: 91  RRVFRGSHCE 62
              FRG   +
Sbjct: 88  ---FRGRRAD 94


>AF143152-1|AAD37863.1|  237|Caenorhabditis elegans putative NADH
           oxidoreductase complexI subunit protein.
          Length = 237

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 23/70 (32%), Positives = 35/70 (50%)
 Frame = -2

Query: 271 HVRIFTPRFDLLGKFILIPIVQFYELIWSFCFTFSF*FNRLRIQL*YTIEFFCICLQKES 92
           H+   TP        ++I   QF+ LI SFCF  SF F+ L   + +T   +C+ L++ S
Sbjct: 30  HLEFVTPFHLYFNWELIIRKYQFWRLITSFCFFGSFGFSFL-FNMIFTYR-YCMMLEEGS 87

Query: 91  RRVFRGSHCE 62
              FRG   +
Sbjct: 88  ---FRGRRAD 94


>AF100307-5|AAC68933.2|  316|Caenorhabditis elegans Hypothetical
           protein T12B5.8 protein.
          Length = 316

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +2

Query: 191 DELIKLDNWYQNELPKKIKSRGKDAHMIHEELVQLMKWKQA 313
           DE++ + +W+ ++  K I+ R  D+    E + QL +WK A
Sbjct: 163 DEVLTILSWFDSKELKTIELRWMDSIDRFERITQLEQWKNA 203


>AF099003-3|ABA00149.1|  759|Caenorhabditis elegans Hypothetical
           protein Y59C2A.3 protein.
          Length = 759

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +1

Query: 331 AVVVSDKSEHATSCDARDEKGLPQTAQY--RIRDDRSKQSQRRGNGHSISV 477
           A + SD++   ++  A++++     A+Y     +DRS  +QRR   HS+ V
Sbjct: 179 ASISSDQNGDGSNMTAKEKRAAADRARYLRMSEEDRSALNQRRREKHSVDV 229


>U88170-2|AAB42250.1|  203|Caenorhabditis elegans Hypothetical
           protein C10G11.9 protein.
          Length = 203

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 30/121 (24%), Positives = 49/121 (40%)
 Frame = +1

Query: 274 PRRTCPAHEMETGQRKILPAVVVSDKSEHATSCDARDEKGLPQTAQYRIRDDRSKQSQRR 453
           PRR  P+    + +R ++ +V    KS  ++S  +   +     +  R    RS+   R 
Sbjct: 84  PRRRRPSTRRSSSRRSVVRSVSRGSKSRRSSSRGSVYGRTGRSRSSKR---SRSRSRPRT 140

Query: 454 GNGHSISVISCR*SRNSTVYG*RMRPGDPRNGRQRLHSKGIPQFRKPHTKRL**VKRGTK 633
            +G   S  S   SR S+    R R      GR+   +K  P  R+  ++    VKR   
Sbjct: 141 RSGSRSSSRSRSGSRRSSRRRSRRRSSSKARGRRASTAKKTPAKRRSRSRSQQKVKRSMS 200

Query: 634 R 636
           R
Sbjct: 201 R 201


>AF003386-14|AAK82896.1|  811|Caenorhabditis elegans Hypothetical
           protein F59E12.1 protein.
          Length = 811

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 359 TPRAVMQETKKAFRKLPNIESAMTALSNLKG 451
           TP   +   +  FRK PN+E  MTA  + KG
Sbjct: 776 TPAGNVGMKRTVFRKDPNVEGIMTASGSRKG 806


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,166,768
Number of Sequences: 27780
Number of extensions: 371984
Number of successful extensions: 1026
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)