Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0885
(710 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g12210.2 68416.m01524 expressed protein 98 6e-21
At3g12210.1 68416.m01523 expressed protein 85 6e-17
At1g61980.1 68414.m06991 mitochondrial transcription termination... 32 0.33
At1g75700.1 68414.m08794 abscisic acid-responsive HVA22 family p... 31 0.57
At5g20420.1 68418.m02428 SNF2 domain-containing protein / helica... 31 0.75
At5g26020.1 68418.m03096 hypothetical protein 30 1.3
At3g56100.1 68416.m06235 leucine-rich repeat transmembrane prote... 30 1.3
At1g61960.1 68414.m06989 mitochondrial transcription termination... 30 1.7
At1g69440.1 68414.m07979 PAZ domain-containing protein / piwi do... 29 2.3
At1g61990.1 68414.m06992 mitochondrial transcription termination... 29 3.0
At1g62110.1 68414.m07008 mitochondrial transcription termination... 29 4.0
At4g02020.1 68417.m00272 zeste-like protein 1 (EZA1) identical t... 28 7.0
At1g62150.1 68414.m07011 mitochondrial transcription termination... 28 7.0
At4g32820.1 68417.m04668 expressed protein ; expression supporte... 27 9.3
At3g48430.1 68416.m05287 zinc finger (C2H2 type) family protein ... 27 9.3
At2g23380.1 68415.m02792 curly leaf protein (CURLY LEAF) / polyc... 27 9.3
At1g62085.1 68414.m07006 mitochondrial transcription termination... 27 9.3
At1g61970.1 68414.m06990 mitochondrial transcription termination... 27 9.3
At1g10600.1 68414.m01200 mov34 family protein similar to AMSH [H... 27 9.3
>At3g12210.2 68416.m01524 expressed protein
Length = 209
Score = 97.9 bits (233), Expect = 6e-21
Identities = 55/164 (33%), Positives = 88/164 (53%)
Frame = +2
Query: 194 ELIKLDNWYQNELPKKIKSRGKDAHMIHEELVQLMKWKQARGKFYPQLSYLIKVNTPRAV 373
EL+ LD +Y+ +LP + R + ++ EL QLMKWK +RGK+ P+L + V
Sbjct: 31 ELVSLDQFYRIKLPCLLHDRDPNPYLTTSELSQLMKWKLSRGKWRPRLLDFVSSLDDSVV 90
Query: 374 MQETKKAFRKLPNIESAMTALSNLKGVGXXXXXXXXXXXXPEIAPFMADECVQAIPEMEG 553
++KAF+ LP+I A+ L+ LKGVG P+IAPFM+DE ++ +
Sbjct: 91 KSASEKAFKSLPDISKAVKELTVLKGVGAATASAVLAAYAPDIAPFMSDEAME-VALGNS 149
Query: 554 SDYTAREYLNFVSHIRNVCDRLNEEQNGCGKKWFPHMVELALWT 685
DY+ ++YL F + +++ L + G P +E ALW+
Sbjct: 150 KDYSLKQYLLFATKLQDKAKELKLKGEWDG----PSDIERALWS 189
>At3g12210.1 68416.m01523 expressed protein
Length = 155
Score = 84.6 bits (200), Expect = 6e-17
Identities = 43/110 (39%), Positives = 63/110 (57%)
Frame = +2
Query: 194 ELIKLDNWYQNELPKKIKSRGKDAHMIHEELVQLMKWKQARGKFYPQLSYLIKVNTPRAV 373
EL+ LD +Y+ +LP + R + ++ EL QLMKWK +RGK+ P+L + V
Sbjct: 31 ELVSLDQFYRIKLPCLLHDRDPNPYLTTSELSQLMKWKLSRGKWRPRLLDFVSSLDDSVV 90
Query: 374 MQETKKAFRKLPNIESAMTALSNLKGVGXXXXXXXXXXXXPEIAPFMADE 523
++KAF+ LP+I A+ L+ LKGVG P+IAPFM+DE
Sbjct: 91 KSASEKAFKSLPDISKAVKELTVLKGVGAATASAVLAAYAPDIAPFMSDE 140
>At1g61980.1 68414.m06991 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 418
Score = 32.3 bits (70), Expect = 0.33
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 119 EFDSVLKLYPQAIKLKAERKTKRPDELIKLDNW 217
EF ++K +PQ I L AE K+ + L+K NW
Sbjct: 308 EFSVLIKRFPQGIGLSAEMVKKKTEFLVKKMNW 340
>At1g75700.1 68414.m08794 abscisic acid-responsive HVA22 family
protein weak similarity to SP|Q00765 Polyposis locus
protein 1 (TB2 protein) {Homo sapiens}; contains Pfam
profile PF03134: TB2/DP1, HVA22 family
Length = 166
Score = 31.5 bits (68), Expect = 0.57
Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Frame = +2
Query: 218 YQNELPK---KIKSRGKDAHMIHEELVQLMKWKQARGKFYPQLSYLIKVNTPRAVMQETK 388
++NE+ + K+K+R KD MI+ + Q + KF+ L Y+ + +TP++ +E K
Sbjct: 90 HENEIDRNLVKVKTRAKDMAMIYLQKAI----NQGQTKFFEILQYITEQSTPKSKAEEKK 145
Query: 389 K 391
+
Sbjct: 146 E 146
>At5g20420.1 68418.m02428 SNF2 domain-containing protein / helicase
domain-containing protein low similarity to SP|Q9U7E0
Transcriptional regulator ATRX homolog {Caenorhabditis
elegans}; contains PFam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 1261
Score = 31.1 bits (67), Expect = 0.75
Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Frame = +2
Query: 278 EELVQLMKWKQARGKFYPQLSYLIKVNTPRAVM-----QETKKAFRKLPNIESAMTALSN 442
E+ LMK + + GKF P LS+L +T ++++ +TK ++ + + E + + LS+
Sbjct: 169 EDCTSLMKTRLSLGKFLPDLSWLTVTSTLKSIVFQIRTVQTKMVYQIVTDEEGSSSTLSS 228
Query: 443 L 445
+
Sbjct: 229 M 229
>At5g26020.1 68418.m03096 hypothetical protein
Length = 241
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 379 RDEKGLPQTAQYRIRDDRSKQSQRRGNGHSIS 474
RDE G P T + ++ + + ++QRRG G S
Sbjct: 106 RDETGTPMTQRKKVCEPEASKTQRRGKGDEAS 137
>At3g56100.1 68416.m06235 leucine-rich repeat transmembrane protein
kinase, putative hypothetical proteins - Arabidopsis
thaliana
Length = 719
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +2
Query: 152 AIKLKAER--KTKRPDELIKLDNWYQNELPKKIKSRGKDAHMIHEELVQLMKWKQARGKF 325
A+K ER K K+ ++L+ D + L + +RG D H+ + L+K ARG F
Sbjct: 477 AVKRLRERSPKVKKREKLVVFDYMSRGSLATFLHARGPDVHINWPTRMSLIK-GMARGLF 535
Query: 326 Y 328
Y
Sbjct: 536 Y 536
>At1g61960.1 68414.m06989 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 457
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 119 EFDSVLKLYPQAIKLKAERKTKRPDELIKLDNW 217
EF ++K YPQ I AE K+ + ++K NW
Sbjct: 344 EFAMMVKRYPQCIDYTAETVKKKTEFIVKNMNW 376
>At1g69440.1 68414.m07979 PAZ domain-containing protein / piwi
domain-containing protein similar to SP|Q9XGW1 PINHEAD
protein (ZWILLE protein) {Arabidopsis thaliana};
contains Pfam profiles PF02171: Piwi domain, PF02170:
PAZ domain
Length = 990
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +2
Query: 38 TQCCTFRTFTMATAKDTSTFFLEANAKEFDSVLKLYPQAIKLKAERKTKRPDE 196
TQCC + T +++ S L+ NAK S+ +LY +I R RPDE
Sbjct: 676 TQCCLYPNITKLSSQFVSNLALKINAKIGGSMTELY-NSIPSHIPR-LLRPDE 726
>At1g61990.1 68414.m06992 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 414
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +2
Query: 80 KDTSTFF-LEANAKEFDSVLKLYPQAIKLKAERKTKRPDELIKLDNWYQNEL 232
K TF L + EF ++K YP I+ E K+ + L+K W +N L
Sbjct: 287 KSAETFLDLGYSRAEFLMMVKRYPPCIEYSVESVKKKNEFLVKKMKWPRNAL 338
>At1g62110.1 68414.m07008 mitochondrial transcription termination
factor family protein / mTERF family protein contains
Pfam profile PF02536: mTERF
Length = 462
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 119 EFDSVLKLYPQAIKLKAERKTKRPDELIKLDNW 217
EF +++K +PQ + L AE K+ + ++K NW
Sbjct: 345 EFITMVKRFPQCLILSAETVKKKIEFVVKKMNW 377
>At4g02020.1 68417.m00272 zeste-like protein 1 (EZA1) identical to
enhancer of zeste-like protein 1(EZA1) (GI:4185507)
[Arabidopsis thaliana]; similar to polycomb group
[Arabidopsis thaliana] GI:1903019 (curly leaf); contains
Pfam profile PF00856: SET domain
Length = 856
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 124 EFFCICLQKESRRVFRGSHCERSKC 50
E +C C K + FRG HC +S+C
Sbjct: 631 EKYCGC-SKSCKNRFRGCHCAKSQC 654
>At1g62150.1 68414.m07011 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 463
Score = 27.9 bits (59), Expect = 7.0
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Frame = +2
Query: 20 AVVKLNTQCCTFRTFTMATAKDTSTFF-LEANAKEFDSVLKLYPQAIKLKAERKTKRPDE 196
+V K N C R TF L + EF ++K PQ I AE K+ +
Sbjct: 319 SVFKKNPLC--LRASEQQILNSMETFIGLGFSRDEFVMMVKCLPQCIGYSAEMVKKKTEF 376
Query: 197 LIKLDNW 217
++K NW
Sbjct: 377 VVKKMNW 383
>At4g32820.1 68417.m04668 expressed protein ; expression supported
by MPSS
Length = 1817
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 80 KDTSTFFLEANAKEFDSVLKLYPQAIKLKAE 172
K+ +T FLE + +++ L Y QAI L A+
Sbjct: 85 KNLATVFLELGSSHYENALNCYLQAIDLDAK 115
>At3g48430.1 68416.m05287 zinc finger (C2H2 type) family protein /
transcription factor jumonji (jmj) family protein
contains Pfam domains PF02375: jmjN domain, PF02373: jmjC
domain and PF00096: Zinc finger, C2H2 type
Length = 1354
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = +2
Query: 518 DECVQAIPEMEGSDYTAREYLNFVSHIRNVCDRLNEEQNGCGKKWFPH 661
+EC MEG + + H RN+C GCGK +F H
Sbjct: 1232 EECAAYQCNMEGCTMSFSSEKQLMLHKRNIC-----PIKGCGKNFFSH 1274
>At2g23380.1 68415.m02792 curly leaf protein (CURLY LEAF) /
polycomb-group protein identical to polycomb group
[Arabidopsis thaliana] GI:1903019 (curly leaf); contains
Pfam profile PF00856: SET domain
Length = 902
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 124 EFFCICLQKESRRVFRGSHCERSKC 50
E +C C K + FRG HC +S+C
Sbjct: 675 EKYCGC-PKSCKNRFRGCHCAKSQC 698
>At1g62085.1 68414.m07006 mitochondrial transcription termination
factor family protein / mTERF family protein contains
Pfam profile PF02536: mTERF
Length = 461
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 119 EFDSVLKLYPQAIKLKAERKTKRPDELIKLDNW 217
E + K +PQ + L AE K+ + L+K NW
Sbjct: 348 EVAMIAKRFPQCLILSAETVKKKTEFLVKKMNW 380
>At1g61970.1 68414.m06990 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 418
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 119 EFDSVLKLYPQAIKLKAERKTKRPDELIKLDNW 217
EF ++K +P I L E K+ + L+K NW
Sbjct: 308 EFAKMVKHFPPCIGLSTETVKKKTEFLVKKMNW 340
>At1g10600.1 68414.m01200 mov34 family protein similar to AMSH [Homo
sapiens] GI:4098124; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 271
Score = 27.5 bits (58), Expect = 9.3
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -1
Query: 686 ASRGPALPCVETISCRSRFVPRL 618
+S P+L CVE ++C+S V R+
Sbjct: 5 SSPSPSLSCVENVTCKSSHVSRV 27
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,187,462
Number of Sequences: 28952
Number of extensions: 347012
Number of successful extensions: 932
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -