Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0884
         (711 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    25   0.80 
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    23   3.2  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   3.2  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    22   5.7  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   7.5  

>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 24.6 bits (51), Expect = 0.80
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 175 GHRWRDDGRQEIVRSKRQSEVLIAKAVRLVSQDEWQQR 62
           GH W+ D  +E VR++ Q   L   A  +   D+ ++R
Sbjct: 117 GHEWQADVSEEAVRARMQD--LTEGAKNMTINDDLEKR 152



 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 516 PSLKPARSGRRLRSPLRKLRATKQNNDSRNAVNQ 617
           P+L PA  G  L    R  R+ + N D+    +Q
Sbjct: 60  PNLNPAVQGSSLTEGKRSKRSKRPNGDTNGDTSQ 93


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -3

Query: 493 GSRSPGSDHGQH 458
           G+RSPG DH ++
Sbjct: 14  GARSPGGDHSEN 25


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1

Query: 52  SKNVSAAIHPGIPTEPPSRSGLRTGAYSGRSP 147
           S NV AA HP +   P +    +    S +SP
Sbjct: 21  SMNVKAAEHPSLRGTPLAMLAAQCNKLSNKSP 52


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 13/52 (25%), Positives = 25/52 (48%)
 Frame = +2

Query: 248 KDKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYA 403
           KD ++   D++   P+   + +  G   V G+ EE+  ++  +    TRR A
Sbjct: 83  KDNYRKVTDLKKRFPKLKVLLSVGGNADVSGQDEEKNIKYRNLLETTTRRLA 134


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 128 APVRSPDREGGSVGIPG*MA 69
           AP++ P REG     PG +A
Sbjct: 436 APIKGPGREGFYTQNPGFLA 455


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,808
Number of Sequences: 336
Number of extensions: 3090
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18843005
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)