Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0884
(711 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12) 68 7e-12
SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26) 67 1e-11
SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29) 60 2e-09
SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 59 3e-09
SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 59 3e-09
SB_21424| Best HMM Match : HSP20 (HMM E-Value=0) 58 9e-09
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 9e-09
SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26) 56 2e-08
SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05) 47 2e-05
SB_21512| Best HMM Match : HRDC (HMM E-Value=3.5) 35 0.075
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 33 0.30
SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5) 33 0.30
SB_6144| Best HMM Match : SCP (HMM E-Value=4.6e-38) 33 0.30
SB_43382| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05) 30 2.1
SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_13144| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_26957| Best HMM Match : PDZ (HMM E-Value=0) 29 3.7
SB_38760| Best HMM Match : Ras (HMM E-Value=4.6e-06) 29 4.9
SB_6600| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
Length = 210
Score = 68.1 bits (159), Expect = 7e-12
Identities = 32/76 (42%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Frame = +2
Query: 251 DKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPD 427
DK ++ LDV+++ PEEIS+K G + ++GKH+ + EHGY + +F R Y LP+ +
Sbjct: 38 DKVEIATLDVKNYRPEEISLKVEHGRIKIDGKHKS-EGEHGYETSEFHRSYNLPDGVDVS 96
Query: 428 TVESRLSSDGVLTVIA 475
TV SR++ DG+L + A
Sbjct: 97 TVSSRITGDGLLHIEA 112
Score = 32.7 bits (71), Expect(2) = 0.054
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +2
Query: 392 RRYALPENCNPDTVESRLSSDGVLTVIAPRTPAATKNERAVPI 520
R + LP++ + D++ SRL DG L + A R T +ER V I
Sbjct: 161 RHFVLPKDVDMDSLVSRLGKDGKLYIEAKRILHPTPHERQVNI 203
Score = 21.4 bits (43), Expect(2) = 0.054
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2
Query: 254 KFQVNLDVQHFSPE 295
+F V LDV FSP+
Sbjct: 142 RFTVTLDVSSFSPD 155
>SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)
Length = 185
Score = 67.3 bits (157), Expect = 1e-11
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 2/94 (2%)
Frame = +2
Query: 251 DKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPD 427
DKFQ+ LDV+ F PEEI+ K +G + V G + + E G+ S++F R Y LPE +
Sbjct: 4 DKFQIATLDVREFKPEEITCKVENGKIKVSGL-QRHESEEGFDSKEFRRCYNLPEGVDES 62
Query: 428 TVESRLSSDGVLTVIA-PRTPAATKNERAVPITQ 526
++ +R++ DG+L V A ++P AT +A P T+
Sbjct: 63 SISTRIAEDGMLHVEALKKSPPATTENKA-PATK 95
Score = 61.3 bits (142), Expect = 8e-10
Identities = 33/84 (39%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Frame = +2
Query: 239 TSNKDKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYIS-RQFTRRYALPEN 415
T + KF + LDV F PEE+ VK + V + E +EHG+ + RQF R + LP
Sbjct: 94 TKDDTKFTLALDVSDFKPEEVDVKVYGHELSVRARQE--CEEHGFFTARQFNRHFVLPRE 151
Query: 416 CNPDTVESRLSSDGVLTVIAPRTP 487
+ DT+ RL DGVL + A + P
Sbjct: 152 VDMDTLVPRLGKDGVLYIEADKRP 175
>SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)
Length = 189
Score = 59.7 bits (138), Expect = 2e-09
Identities = 29/69 (42%), Positives = 44/69 (63%)
Frame = +2
Query: 269 LDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLS 448
LDV+ + PEEIS K +G V V+G+H + E G+ ++F R + LPE +P+ V SR+S
Sbjct: 12 LDVKEYRPEEISFKVENGVVKVQGRH-VNEGEFGFELKEFRRTFTLPEGIDPENVTSRIS 70
Query: 449 SDGVLTVIA 475
+ G L + A
Sbjct: 71 NHGHLHIEA 79
Score = 52.8 bits (121), Expect = 3e-07
Identities = 26/83 (31%), Positives = 44/83 (53%)
Frame = +2
Query: 242 SNKDKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCN 421
+ +DKF + +DV F PE I V+ ++V HE + H Y + F R++ LP +
Sbjct: 93 AKEDKFSMAIDVAGFPPESIKVQVLGNELLVNANHEVEHEGH-YHAMHFNRQFVLPREVD 151
Query: 422 PDTVESRLSSDGVLTVIAPRTPA 490
D++ +RL +G L A ++ A
Sbjct: 152 MDSLTTRLDKEGKLHFEAKKSVA 174
>SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 59.3 bits (137), Expect = 3e-09
Identities = 29/79 (36%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Frame = +2
Query: 242 SNKDKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENC 418
+N++K ++ LDV+ + PEEIS K +G+V V+G+H + G+ ++F R +ALPE
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFALPEGV 60
Query: 419 NPDTVESRLSSDGVLTVIA 475
V++R+S+ G L + A
Sbjct: 61 EASNVKTRISNHGQLHIEA 79
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/86 (30%), Positives = 43/86 (50%)
Frame = +2
Query: 206 AIANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQ 385
A+ D G + DKF + +DV F P+ I V+ ++V HE + H Y +
Sbjct: 82 ALPGPDGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMH 140
Query: 386 FTRRYALPENCNPDTVESRLSSDGVL 463
F R++ LP + D++ +RL +G L
Sbjct: 141 FNRQFVLPREVDMDSLTTRLDKEGKL 166
>SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 59.3 bits (137), Expect = 3e-09
Identities = 29/79 (36%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Frame = +2
Query: 242 SNKDKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENC 418
+N++K ++ LDV+ + PEEIS K +G+V V+G+H + G+ ++F R +ALPE
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFALPEGV 60
Query: 419 NPDTVESRLSSDGVLTVIA 475
V++R+S+ G L + A
Sbjct: 61 EASNVKTRISNHGQLHIEA 79
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/86 (30%), Positives = 43/86 (50%)
Frame = +2
Query: 206 AIANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQ 385
A+ D G + DKF + +DV F P+ I V+ ++V HE + H Y +
Sbjct: 82 ALPGPDGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMH 140
Query: 386 FTRRYALPENCNPDTVESRLSSDGVL 463
F R++ LP + D++ +RL +G L
Sbjct: 141 FNRQFVLPREVDMDSLTTRLDKEGKL 166
>SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)
Length = 424
Score = 57.6 bits (133), Expect = 9e-09
Identities = 28/79 (35%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Frame = +2
Query: 242 SNKDKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENC 418
+N++K ++ LDV+ + PEEIS K +G+V V+G+H + G+ ++F R + LPE
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGV 60
Query: 419 NPDTVESRLSSDGVLTVIA 475
V++R+S+ G L + A
Sbjct: 61 EASNVKTRISNHGQLHIEA 79
Score = 54.8 bits (126), Expect = 7e-08
Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Frame = +2
Query: 251 DKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPD 427
D+ ++ LDV+ + PEEIS K +G+V V+G+H + G+ ++F R + LPE
Sbjct: 239 DELEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGVEAS 297
Query: 428 TVESRLSSDGVLTVIA 475
V++R+S+ G L + A
Sbjct: 298 NVKTRISNHGQLHIEA 313
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/86 (30%), Positives = 43/86 (50%)
Frame = +2
Query: 206 AIANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQ 385
A+ D G + DKF + +DV F P+ I V+ ++V HE + H Y +
Sbjct: 82 ALPGPDGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMH 140
Query: 386 FTRRYALPENCNPDTVESRLSSDGVL 463
F R++ LP + D++ +RL +G L
Sbjct: 141 FNRQFVLPREVDMDSLTTRLDKEGKL 166
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/86 (30%), Positives = 43/86 (50%)
Frame = +2
Query: 206 AIANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQ 385
A+ D G + DKF + +DV F P+ I V+ ++V HE + H Y +
Sbjct: 316 ALPGPDGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMH 374
Query: 386 FTRRYALPENCNPDTVESRLSSDGVL 463
F R++ LP + D++ +RL +G L
Sbjct: 375 FNRQFVLPREVDMDSLTTRLDKEGKL 400
>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 760
Score = 57.6 bits (133), Expect = 9e-09
Identities = 28/79 (35%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Frame = +2
Query: 242 SNKDKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENC 418
+N++K ++ LDV+ + PEEIS K +G+V V+G+H + G+ ++F R + LPE
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGV 60
Query: 419 NPDTVESRLSSDGVLTVIA 475
V++R+S+ G L + A
Sbjct: 61 EASNVKTRISNHGQLHIEA 79
Score = 57.2 bits (132), Expect = 1e-08
Identities = 47/174 (27%), Positives = 78/174 (44%), Gaps = 6/174 (3%)
Frame = +2
Query: 206 AIANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQ 385
A+ D G + DKF + +DV F P+ I V+ ++V HE + H Y +
Sbjct: 82 ALPGPDGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMH 140
Query: 386 FTRRYALPENCNPDTVESRLSSDGVLTVIAPRTPAATKNERAVPITQTGPVRKEIKEPTA 565
F R++ LP + D++ +RL +G L A +N A+P PVR E+K
Sbjct: 141 FNRQFVLPREVDMDSLTTRLDKEGKL-----HFEAKKRNAPALP-----PVR-ELKVLKD 189
Query: 566 EAESNETKQ*LSERCESKKCYSVC*FY------LHSSCVLVRLIALSYLYLIKS 709
N + + + C + + S+ F+ + SSC+ L LS Y ++S
Sbjct: 190 NISRNSSSE-ICPSCRALETSSLIEFFSLSAKTIVSSCLATLLNRLSVTYFLES 242
>SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)
Length = 695
Score = 56.4 bits (130), Expect = 2e-08
Identities = 28/81 (34%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Frame = +2
Query: 236 ITSNKDKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPE 412
+ +N++K ++ LDV+ + PEEIS K +G V V+G+H + G+ ++F R + LPE
Sbjct: 1 MANNENKLEIAKLDVREYRPEEISFKVENGVVKVQGRH-VNEGPFGFELKEFRRTFTLPE 59
Query: 413 NCNPDTVESRLSSDGVLTVIA 475
V++R+S+ G L + A
Sbjct: 60 GVEASNVKTRISNHGQLHIEA 80
Score = 53.2 bits (122), Expect = 2e-07
Identities = 26/79 (32%), Positives = 42/79 (53%)
Frame = +2
Query: 227 GSTITSNKDKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYAL 406
G+ S DKF + +DV+ F PE I V+ ++V HE + H Y + F R++ L
Sbjct: 89 GAKKESKDDKFSMAMDVKGFPPEAIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFIL 147
Query: 407 PENCNPDTVESRLSSDGVL 463
P + D++ +RL +G L
Sbjct: 148 PREVDMDSLTTRLDKEGKL 166
>SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)
Length = 259
Score = 46.8 bits (106), Expect = 2e-05
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Frame = +2
Query: 197 KQMAIANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYI 376
K+ A ++ S T + KF + LDV F PEE+ VK + V + E +EHG+
Sbjct: 8 KKAPPATKENQSAATKDDTKFTLALDVSDFKPEEVDVKVYGHELSVRARQE--CEEHGFF 65
Query: 377 -SRQFTRRYALPE 412
+RQF R + LP+
Sbjct: 66 TARQFNRHFVLPQ 78
>SB_21512| Best HMM Match : HRDC (HMM E-Value=3.5)
Length = 191
Score = 34.7 bits (76), Expect = 0.075
Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -2
Query: 695 INTIKRSVSQARTRNANKINTRYNTF-LIHSVPRVIVL-FRCSQLPQWAP*SPSGP 534
++ IKRS T N N NTR + L H V R ++L FR LP WA P P
Sbjct: 130 LSLIKRSSQFNSTGNINYTNTRMKCYALRHCVNRAVLLKFRALSLPTWAYSIPYQP 185
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 32.7 bits (71), Expect = 0.30
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +2
Query: 425 DTVESRLSSDGVLTVIAPRTPAATKNERAVPITQT-GPVRKEIKEPTAEAESNETK 589
D V ++L+ V TV+ P TP T + PI T PVR E+++ A+A ++ K
Sbjct: 329 DGVITKLTDASVYTVVIPTTPRTTTAVTS-PIPSTKSPVRIEVRKQKAKAPADTNK 383
>SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5)
Length = 436
Score = 32.7 bits (71), Expect = 0.30
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2
Query: 341 KHEERQDEHGYISRQFTRRYAL 406
KHEER+D HGY+ + T ++AL
Sbjct: 72 KHEEREDRHGYLKDKVTLQHAL 93
>SB_6144| Best HMM Match : SCP (HMM E-Value=4.6e-38)
Length = 468
Score = 32.7 bits (71), Expect = 0.30
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +2
Query: 416 CNPDTVESRLSSDGVLTVIAPRTPAATKNERAVPITQTGPVRKEIKEPTAEAESN 580
CNPD+ ++ ++S AP TP AT V T T PV + + E + N
Sbjct: 77 CNPDSGQTTVTSTAATPETAPPTPPATGAPPEVTTTPTPPVTTQQADNYQEYQLN 131
>SB_43382| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 861
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -2
Query: 692 NTIKRSVSQARTRNANKI--NTRYNTFLIHSVPRVIVLFRCSQLPQW 558
+TIK++V RN+N++ + R+ TFL+ PR+ R QW
Sbjct: 424 STIKQTVQGFVMRNSNQMKKDVRFQTFLVICSPRLAEAMRGLDFEQW 470
>SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)
Length = 3397
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +2
Query: 335 EGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLSSDGVLT 466
E K+EE DEHG I R+ T+ TV ++ DGV T
Sbjct: 1187 ETKYEEYVDEHGQIIRRTTKVKHTAVKQERTTVTKTVTRDGVTT 1230
>SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +2
Query: 434 ESRLSSDGVLTVIAPRTPAATKNERAVPITQTGPVRKEIKEPTAEAESNE 583
+S SS+ AP+ PAA +N +A PV+K K ++E+ES+E
Sbjct: 48 DSSSSSESDSEEEAPKKPAAKQNGKAKKQNGKAPVKKAAKS-SSESESDE 96
>SB_13144| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 29.1 bits (62), Expect = 3.7
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +2
Query: 305 VKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPE 412
+++A GYV+ G H + + G + + R LP+
Sbjct: 10 IRSARGYVVTSGSHTSKSEVRGIMEETCSNRNPLPQ 45
>SB_26957| Best HMM Match : PDZ (HMM E-Value=0)
Length = 1685
Score = 29.1 bits (62), Expect = 3.7
Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 1/102 (0%)
Frame = +2
Query: 275 VQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLSSD 454
+ H+ + T + G+ E + Y+SR TR+ A P + PD S + +
Sbjct: 1565 MSHYQASTVLKNTGTSVELALGRSREAAE---YLSR--TRQQASPHSTEPDIKPSNIQTT 1619
Query: 455 GVLTVIAPR-TPAATKNERAVPITQTGPVRKEIKEPTAEAES 577
I+PR A R P P +K + +A S
Sbjct: 1620 ESTPSISPRGVEVAAGPRRTPPPVAPKPSTDSLKRSSPQAGS 1661
>SB_38760| Best HMM Match : Ras (HMM E-Value=4.6e-06)
Length = 965
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +1
Query: 460 ADRDRSQDSGCHEERASCSHHSNRPGPEGD*GAHCGS*EQRNKTMTLGTL 609
A+++R++D C++E S +R GD HC NK TL
Sbjct: 691 AEKERAEDMHCYDEIYSPCIQFDRSSKRGDQEVHCADLTGSNKRSPSPTL 740
>SB_6600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 28.3 bits (60), Expect = 6.5
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = -3
Query: 241 GDGGTDVSIGDRHLLPRTVVISGHRWRDDGRQEIVRSKRQSEVLIAKAVRLVSQDEWQQR 62
G G + S G++ + V +WR +G + RS + EV K V + +W+QR
Sbjct: 132 GSGDRERSGGEKEVETEKEVEGSRKWRREGSGDRERSGGEKEVETEKEVE--ERRKWRQR 189
>SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1396
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/27 (55%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +1
Query: 82 GIPTEPPSRSGLRTGAYSGRS-PDGRH 159
G P+ PPSRS RT SG S D RH
Sbjct: 853 GKPSTPPSRSKKRTRGISGDSVSDNRH 879
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,984,280
Number of Sequences: 59808
Number of extensions: 426894
Number of successful extensions: 1489
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1484
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -