Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0882
(683 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0118 - 12492206-12492415,12492746-12492816,12493611-124936... 33 0.16
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 30 1.5
02_05_0234 + 27062945-27063281,27064273-27064568,27064928-270650... 29 2.6
01_05_0592 - 23483834-23484285,23484357-23484455,23484534-234847... 29 2.6
09_04_0338 - 16801189-16801524,16801605-16801679,16801758-168018... 28 6.0
04_04_0778 + 28019924-28020553,28020657-28020797,28021359-28021454 28 6.0
08_01_0521 + 4540627-4540794,4541822-4541836,4541957-4543036 28 7.9
>09_03_0118 -
12492206-12492415,12492746-12492816,12493611-12493634,
12494061-12494114,12494803-12496345
Length = 633
Score = 33.5 bits (73), Expect = 0.16
Identities = 11/25 (44%), Positives = 20/25 (80%)
Frame = +1
Query: 214 IDEMGSRVDELEKNITDLMTQAGVE 288
+DEMG+++DELE+++ DL + G +
Sbjct: 594 LDEMGTKIDELEQSVNDLKAEMGTD 618
>01_06_0124 -
26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/79 (26%), Positives = 41/79 (51%)
Frame = +1
Query: 55 EPNSDNIVKNTENEYSTPASDPKNMQEVTQYVQSLLQNMQDKFQSMSDQIINRIDEMGSR 234
E + +N+ + E E + KN +++ + V S LQN Q ++ + E+G++
Sbjct: 480 EASFENLGNDLEQELERISIMHKNNEDL-ELVNSNLQNDLATVQGQKNEAVASTLELGNK 538
Query: 235 VDELEKNITDLMTQAGVEN 291
++E + I++L Q VEN
Sbjct: 539 LEEKNQQISNL--QEAVEN 555
Score = 29.9 bits (64), Expect = 2.0
Identities = 20/79 (25%), Positives = 40/79 (50%)
Frame = +1
Query: 55 EPNSDNIVKNTENEYSTPASDPKNMQEVTQYVQSLLQNMQDKFQSMSDQIINRIDEMGSR 234
E + N+ + E ++ + KN +E+ + S LQN Q ++ + E+G++
Sbjct: 739 EASFKNLGNDLEQKFEQISVMQKNNEEL-ELANSNLQNELAMVQEQKNEAVASTVELGNK 797
Query: 235 VDELEKNITDLMTQAGVEN 291
++E + I++L Q VEN
Sbjct: 798 LEEQNQQISNL--QEAVEN 814
>02_05_0234 +
27062945-27063281,27064273-27064568,27064928-27065068,
27065556-27065644,27067444-27067516
Length = 311
Score = 29.5 bits (63), Expect = 2.6
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +3
Query: 456 ITISPNKTTSSKEFEIGISN*IISFESFQLFSLVYCIYKLKSAIFNNLVTFQPSTS-NLK 632
+T+ +SSK +GI SF +F+LVYC + N VTF + L
Sbjct: 73 LTVMGVSKSSSKCATVGIQGIAWSFGGM-IFALVYCTAGISGGHINPAVTFGLFLARKLS 131
Query: 633 FSFMITVILVQCI 671
+ I I++QC+
Sbjct: 132 LTRAIFYIVMQCL 144
>01_05_0592 -
23483834-23484285,23484357-23484455,23484534-23484702,
23485049-23485363,23485561-23485767,23485852-23486106,
23486575-23486736
Length = 552
Score = 29.5 bits (63), Expect = 2.6
Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 3/104 (2%)
Frame = +1
Query: 64 SDNIVKNTENEYSTPASDPKNMQEVTQYVQSLLQNMQD---KFQSMSDQIINRIDEMGSR 234
S K TE E A + K+ E+T+ S L++++D K Q+ D ++N+I ++
Sbjct: 367 SSKAAKITELEKRIKALE-KDKGELTKKRDSALKDVEDRKIKSQAQFDVLVNKIKKLEGA 425
Query: 235 VDELEKNITDLMTQAGVENEK*K*FSSINLR*NIIPR*SVWINN 366
DE+ T L+ N F+++ + +I +V N
Sbjct: 426 RDEVANAATPLIQAMFFNNNGPSSFNAVEIFDKLITAPNVCFKN 469
>09_04_0338 -
16801189-16801524,16801605-16801679,16801758-16801831,
16801972-16802059,16802185-16802336,16802423-16802582,
16802913-16803128,16803487-16803744,16804202-16804231,
16804738-16804941,16805790-16805855
Length = 552
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = +1
Query: 106 PASDPKNMQEVTQYVQSLLQNMQDKFQSMSDQIINRIDEMGSRVDELEK 252
P+ +++ T S L+ + + ++ + +RID+MG+ V+ L K
Sbjct: 220 PSLHQNGLEQSTNISNSTLEGLANTISNLKAEQRSRIDKMGAEVERLTK 268
>04_04_0778 + 28019924-28020553,28020657-28020797,28021359-28021454
Length = 288
Score = 28.3 bits (60), Expect = 6.0
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +3
Query: 456 ITISPNKTTSSKEFEIGISN*IISFESFQLFSLVYCIYKLKSAIFNNLVTFQPSTS-NLK 632
+T+ ++SK +GI SF +F+LVYC + A N VTF + L
Sbjct: 72 LTVMGVNNSTSKCATVGIQGIAWSFGGM-IFALVYCTAGISGAHINPAVTFGLFLARKLS 130
Query: 633 FSFMITVILVQCI 671
+ + +++QC+
Sbjct: 131 LTRALFYMVMQCL 143
>08_01_0521 + 4540627-4540794,4541822-4541836,4541957-4543036
Length = 420
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Frame = +1
Query: 79 KNTENEYSTPASDPKNMQEVTQYVQSLLQNMQDKFQSMSDQIINRID----EMGSRVDEL 246
K+++N + + PK+ + V+S +D Q +D I ID E S+ E
Sbjct: 222 KSSKNTTTAESRHPKDTSLEEKQVKSATSKEEDGLQDKTDDAIEDIDDIYGESHSKKIEF 281
Query: 247 EKNITDLMTQAGVENE 294
+ +T +GV+++
Sbjct: 282 PRRNKKFLTNSGVDSQ 297
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,797,734
Number of Sequences: 37544
Number of extensions: 287579
Number of successful extensions: 783
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -