Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0882
         (683 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15802.1 68417.m02405 expressed protein contains non-consensu...    46   2e-05
At5g61150.2 68418.m07672 leo1-like family protein weak similarit...    29   2.2  
At5g61150.1 68418.m07671 leo1-like family protein weak similarit...    29   2.2  
At5g60440.1 68418.m07581 MADS-box protein (AGL62) contains Pfal ...    29   2.2  
At4g15233.1 68417.m02334 ABC transporter family protein similar ...    29   2.2  
At1g62380.1 68414.m07038 1-aminocyclopropane-1-carboxylate oxida...    29   2.9  
At5g37120.1 68418.m04455 hypothetical protein hypothetical prote...    29   3.8  
At4g20810.1 68417.m03020 transcription initiation factor IIE (TF...    28   6.6  
At3g52450.1 68416.m05768 U-box domain-containing protein similar...    28   6.6  
At4g32430.1 68417.m04616 pentatricopeptide (PPR) repeat-containi...    27   8.8  
At2g34730.1 68415.m04265 myosin heavy chain-related low similari...    27   8.8  
At2g20280.1 68415.m02369 zinc finger (CCCH-type) family protein ...    27   8.8  
At1g06590.1 68414.m00698 expressed protein                             27   8.8  

>At4g15802.1 68417.m02405 expressed protein contains non-consensus
           AT-AC splice sites at intron 4
          Length = 50

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 19/34 (55%), Positives = 28/34 (82%)
 Frame = +1

Query: 133 EVTQYVQSLLQNMQDKFQSMSDQIINRIDEMGSR 234
           ++T +VQ+LLQ MQ +FQ+MSD II +ID+MG +
Sbjct: 15  DMTAFVQNLLQQMQTRFQTMSDSIITKIDDMGGQ 48


>At5g61150.2 68418.m07672 leo1-like family protein weak similarity
           to SP|P38439 LEO1 protein {Saccharomyces cerevisiae};
           contains Pfam profile PF04004: Leo1-like protein;
           supporting cDNA gi|21929714|gb|AF490422.1|
          Length = 623

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = -3

Query: 78  NNIVRVRFCHIKENKIYSNVNARTCR 1
           NNIVR RF   ++ K YS  NAR  R
Sbjct: 303 NNIVRHRFVKSRDGKTYSESNARFVR 328


>At5g61150.1 68418.m07671 leo1-like family protein weak similarity
           to SP|P38439 LEO1 protein {Saccharomyces cerevisiae};
           contains Pfam profile PF04004: Leo1-like protein;
           supporting cDNA gi|21929714|gb|AF490422.1|
          Length = 625

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = -3

Query: 78  NNIVRVRFCHIKENKIYSNVNARTCR 1
           NNIVR RF   ++ K YS  NAR  R
Sbjct: 303 NNIVRHRFVKSRDGKTYSESNARFVR 328


>At5g60440.1 68418.m07581 MADS-box protein (AGL62) contains Pfal
           profile PF00319: SRF-type transcription factor
           (DNA-binding and dimerisation domain)
          Length = 299

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/70 (22%), Positives = 33/70 (47%)
 Frame = +1

Query: 43  FNMAEPNSDNIVKNTENEYSTPASDPKNMQEVTQYVQSLLQNMQDKFQSMSDQIINRIDE 222
           F+   PN D+++    N    P     NMQ       S++Q++ +       Q++++++ 
Sbjct: 60  FSFGHPNVDSVIDRFINNNPLPPHQHNNMQLRETRRNSIVQDLNNHL----TQVLSQLET 115

Query: 223 MGSRVDELEK 252
              + DEL+K
Sbjct: 116 EKKKYDELKK 125


>At4g15233.1 68417.m02334 ABC transporter family protein similar to
           pleiotropic drug resistance like protein [Nicotiana
           tabacum] GI:20522008, PDR5-like ABC transporter
           [Spirodela polyrhiza] GI:1514643; contains Pfam profile
           PF00005: ABC transporter
          Length = 1168

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/48 (25%), Positives = 28/48 (58%)
 Frame = +1

Query: 145 YVQSLLQNMQDKFQSMSDQIINRIDEMGSRVDELEKNITDLMTQAGVE 288
           ++  L++++++    +  +I  RIDE+G  + ++E   +DL  +A  E
Sbjct: 74  FIDDLIRHVENDNHVLLQKIRKRIDEVGIDLPKIEARFSDLFVEAECE 121


>At1g62380.1 68414.m07038 1-aminocyclopropane-1-carboxylate oxidase,
           putative / ACC oxidase, putative nearly identical to ACC
           oxidase (ACC ox1) GI:587086 from [Brassica oleracea]
          Length = 320

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/48 (27%), Positives = 27/48 (56%)
 Frame = +1

Query: 133 EVTQYVQSLLQNMQDKFQSMSDQIINRIDEMGSRVDELEKNITDLMTQ 276
           E T YV+ L Q+  +    +SD+    + + G R++ L +++ DL+ +
Sbjct: 90  ESTFYVRHLPQSNLNDISDVSDEYRTAMKDFGKRLENLAEDLLDLLCE 137


>At5g37120.1 68418.m04455 hypothetical protein hypothetical proteins
           - Arabidopsis thaliana
          Length = 98

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/46 (32%), Positives = 28/46 (60%)
 Frame = +1

Query: 160 LQNMQDKFQSMSDQIINRIDEMGSRVDELEKNITDLMTQAGVENEK 297
           L+N    F+ + + +IN I+ + +R  E+EK + +L T+  +E EK
Sbjct: 3   LRNNNHIFKWVDEALINEIETLTARHGEIEKELKELRTER-LEFEK 47


>At4g20810.1 68417.m03020 transcription initiation factor IIE
           (TFIIE) alpha subunit family protein / general
           transcription factor TFIIE family protein contains Pfam
           profile: PF02002 TFIIE alpha subunit
          Length = 416

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
 Frame = +1

Query: 37  IFFNMAEPNSDNIV---KNTENEYSTPASDPKNMQEVTQYVQSLLQNMQDKFQSMSDQII 207
           IFF+    N + ++   K T  E     SD  N +    +++ LLQNM+ + + + D  I
Sbjct: 147 IFFHCENCNGELVMECNKLTSEEVVVDGSD--NPRSRRDHLKDLLQNMEVRLKPLMDH-I 203

Query: 208 NRIDEM 225
           NRI ++
Sbjct: 204 NRIKDL 209


>At3g52450.1 68416.m05768 U-box domain-containing protein similar to
           immediate-early fungal elicitor protein CMPG1
           [Petroselinum crispum] GI:14582200; contains Pfam
           profile PF04564: U-box domain
          Length = 435

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
 Frame = +1

Query: 70  NIVKNTENEYSTPAS--DPKNMQEVTQYVQSLLQNMQDKFQSMSDQIIN 210
           NIV N+ + Y++P+S     N+ ++ Q   ++L+N  D  +S+ D+ ++
Sbjct: 144 NIVSNSVDTYNSPSSSLSSSNLNDMCQ--SNMLENRFDSSRSLMDEALS 190


>At4g32430.1 68417.m04616 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 763

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -3

Query: 378 LFIFIVDPDRLSWDDILTQIDR*KLFLLFI 289
           +F  +VDPD +SW+ IL+  D  ++ L F+
Sbjct: 133 IFENLVDPDVVSWNTILSGFDDNQIALNFV 162


>At2g34730.1 68415.m04265 myosin heavy chain-related low similarity
           to  SP|P14105 Myosin heavy chain, nonmuscle (Cellular
           myosin heavy chain) {Gallus gallus}
          Length = 825

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +1

Query: 133 EVTQYVQSLLQNMQDKFQSMSDQIINRIDEMGSRVDELEKNITDL 267
           E TQ   S L+NMQ +   +S QI     +  +    LEK   DL
Sbjct: 720 EKTQKTNSRLKNMQSQLSDLSHQINEVKGKASTYKQRLEKKCCDL 764


>At2g20280.1 68415.m02369 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 371

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +1

Query: 55  EPNSDNIVKNTENEYSTPASDPKNMQE-VTQYVQSLLQNMQDKFQSMSDQIINRIDEMGS 231
           +P +D   K  + E  T     KN  + V +YVQSL Q++Q K  +       + +E  +
Sbjct: 6   QPKADLAKKQKQVEDKTFGLKNKNKSKNVQKYVQSLKQSVQPKPDATKAAAKKKKEEEKA 65

Query: 232 RVDELEK 252
           R  EL +
Sbjct: 66  REQELNE 72


>At1g06590.1 68414.m00698 expressed protein
          Length = 916

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/56 (26%), Positives = 31/56 (55%)
 Frame = +1

Query: 106 PASDPKNMQEVTQYVQSLLQNMQDKFQSMSDQIINRIDEMGSRVDELEKNITDLMT 273
           P S       +  Y+ SL ++  D F+   +++IN++ E+G   +E++  +TD +T
Sbjct: 38  PFSSVAQHNRLGLYLLSLTKSCDDIFEPKLEKLINQLREVG---EEMDAWLTDHLT 90


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,897,955
Number of Sequences: 28952
Number of extensions: 271318
Number of successful extensions: 765
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)