Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0880
(648 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 118 3e-27
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 118 4e-27
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 118 4e-27
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 116 2e-26
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 113 7e-26
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 113 7e-26
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 113 7e-26
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 113 1e-25
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 112 2e-25
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 111 4e-25
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 111 4e-25
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 108 3e-24
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 108 3e-24
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 104 4e-23
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 94 8e-20
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 68 4e-19
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 80 1e-15
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 50 5e-15
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 74 9e-14
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 74 9e-14
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 74 9e-14
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 73 2e-13
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 73 2e-13
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 70 2e-12
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 70 2e-12
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 69 4e-12
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 66 1e-11
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 66 2e-11
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 66 2e-11
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 65 3e-11
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 64 8e-11
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 63 2e-10
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 63 2e-10
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 63 2e-10
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 63 2e-10
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 62 2e-10
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 62 3e-10
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 62 3e-10
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 62 4e-10
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 62 4e-10
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 61 5e-10
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 61 5e-10
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 61 5e-10
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 61 7e-10
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 61 7e-10
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 61 7e-10
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 61 7e-10
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 61 7e-10
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 60 9e-10
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 60 9e-10
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 60 9e-10
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 60 9e-10
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 60 2e-09
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 60 2e-09
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 60 2e-09
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 59 2e-09
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 59 2e-09
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 59 2e-09
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 59 2e-09
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 59 3e-09
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 59 3e-09
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 58 5e-09
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 58 5e-09
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 58 5e-09
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 57 9e-09
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 57 9e-09
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 57 9e-09
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 57 1e-08
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 56 2e-08
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 56 2e-08
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 56 2e-08
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 56 2e-08
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 56 3e-08
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 55 4e-08
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 55 4e-08
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 55 4e-08
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 55 4e-08
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 55 4e-08
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 55 4e-08
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 55 5e-08
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 55 5e-08
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 55 5e-08
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 55 5e-08
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 55 5e-08
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 54 8e-08
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 54 8e-08
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 53 2e-07
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 53 2e-07
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 53 2e-07
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 52 2e-07
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 52 2e-07
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 52 3e-07
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 52 3e-07
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 52 4e-07
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 51 6e-07
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 51 6e-07
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 51 6e-07
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 51 6e-07
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 51 6e-07
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 50 1e-06
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 50 1e-06
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 50 1e-06
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 50 2e-06
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 50 2e-06
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 50 2e-06
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 50 2e-06
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 49 2e-06
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 49 2e-06
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 49 3e-06
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 48 4e-06
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 48 4e-06
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 48 4e-06
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 48 4e-06
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 48 5e-06
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 48 5e-06
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 48 7e-06
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 48 7e-06
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 48 7e-06
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 48 7e-06
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 48 7e-06
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 47 9e-06
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 47 9e-06
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 47 9e-06
At2g47310.1 68415.m05906 flowering time control protein-related ... 47 9e-06
At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing ... 47 1e-05
At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing ... 47 1e-05
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 47 1e-05
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 47 1e-05
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 47 1e-05
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 46 2e-05
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 46 2e-05
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 46 2e-05
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 46 2e-05
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 46 2e-05
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 45 5e-05
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 45 5e-05
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 45 5e-05
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 44 7e-05
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 44 7e-05
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 44 7e-05
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 44 7e-05
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 44 9e-05
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 44 9e-05
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 44 1e-04
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 44 1e-04
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 43 2e-04
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 42 3e-04
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 42 3e-04
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 42 3e-04
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 42 3e-04
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 42 4e-04
At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein ... 42 4e-04
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 42 4e-04
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 42 4e-04
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 41 6e-04
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 41 8e-04
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 41 8e-04
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 40 0.001
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 40 0.001
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 40 0.001
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 40 0.002
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 40 0.002
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 40 0.002
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 40 0.002
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 40 0.002
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 39 0.002
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 39 0.003
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 38 0.004
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 38 0.004
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 38 0.004
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 38 0.004
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 38 0.004
At5g51300.2 68418.m06360 splicing factor-related contains simila... 38 0.006
At5g51300.1 68418.m06359 splicing factor-related contains simila... 38 0.006
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 38 0.008
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 38 0.008
At1g45100.1 68414.m05170 polyadenylate-binding protein, putative... 38 0.008
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 37 0.010
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 37 0.013
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 36 0.018
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 36 0.018
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 36 0.018
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 36 0.018
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 36 0.018
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 36 0.018
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 36 0.023
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 36 0.023
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 36 0.023
At3g21100.1 68416.m02667 RNA recognition motif (RRM)-containing ... 36 0.031
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 35 0.041
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 35 0.054
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 35 0.054
At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing ... 34 0.071
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 34 0.071
At1g72800.1 68414.m08416 nuM1-related contains similarity with n... 34 0.071
At5g19030.3 68418.m02263 RNA recognition motif (RRM)-containing ... 34 0.094
At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing ... 34 0.094
At5g12440.1 68418.m01462 zinc finger (CCCH-type) family protein ... 33 0.12
At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing ... 33 0.16
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 33 0.16
At2g42240.1 68415.m05228 RNA recognition motif (RRM)-containing ... 33 0.16
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 33 0.22
At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) famil... 33 0.22
At5g16840.1 68418.m01973 RNA recognition motif (RRM)-containing ... 32 0.29
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 32 0.29
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 32 0.29
At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein ... 32 0.38
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 32 0.38
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 32 0.38
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 32 0.38
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 31 0.50
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 31 0.50
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 31 0.50
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 31 0.50
At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing ... 31 0.66
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 31 0.66
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 31 0.87
At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing ... 31 0.87
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 30 1.2
At5g04210.1 68418.m00409 RNA recognition motif (RRM)-containing ... 30 1.2
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 30 1.2
At2g33440.1 68415.m04099 splicing factor family protein similar ... 30 1.2
At1g67950.3 68414.m07762 RNA recognition motif (RRM)-containing ... 30 1.2
At1g67950.1 68414.m07761 RNA recognition motif (RRM)-containing ... 30 1.2
At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing ... 30 1.5
At4g16810.1 68417.m02538 expressed protein similar to vernalizat... 30 1.5
At2g39260.1 68415.m04821 MIF4G domain-containing protein similar... 30 1.5
At3g50670.2 68416.m05543 U1 small nuclear ribonucleoprotein 70 (... 29 2.0
At3g18810.1 68416.m02389 protein kinase family protein contains ... 29 2.0
At1g73490.1 68414.m08508 RNA recognition motif (RRM)-containing ... 29 2.0
At1g67950.2 68414.m07760 RNA recognition motif (RRM)-containing ... 29 2.0
At2g47390.1 68415.m05915 expressed protein 29 2.7
At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) famil... 29 2.7
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei... 29 3.5
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei... 29 3.5
At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) famil... 29 3.5
At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) famil... 28 4.7
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 28 4.7
At5g03480.1 68418.m00304 expressed protein ; expression support... 28 4.7
At4g08750.1 68417.m01443 RNA recognition motif (RRM)-containing ... 28 4.7
At1g04950.2 68414.m00493 TATA box-binding protein-associated fac... 28 4.7
At1g04950.1 68414.m00492 TATA box-binding protein-associated fac... 28 4.7
At5g22830.1 68418.m02669 magnesium transporter CorA-like family ... 28 6.1
At4g24420.1 68417.m03501 RNA recognition motif (RRM)-containing ... 28 6.1
At5g27640.1 68418.m03311 eukaryotic translation initiation facto... 27 8.1
At5g25780.1 68418.m03060 eukaryotic translation initiation facto... 27 8.1
At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing ... 27 8.1
At4g17720.1 68417.m02646 RNA recognition motif (RRM)-containing ... 27 8.1
At3g21215.1 68416.m02681 RNA-binding protein, putative contains ... 27 8.1
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 27 8.1
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit... 27 8.1
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 27 8.1
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 118 bits (284), Expect = 3e-27
Identities = 63/176 (35%), Positives = 98/176 (55%), Gaps = 25/176 (14%)
Frame = +1
Query: 190 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 369
D KLFVGG+SWET + +LR+HF YGE+ V D TGR RGF F++F P +D+V
Sbjct: 4 DQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRV 63
Query: 370 MAAGEHTINNKKVDPKKAKARH-------------------------GKIFVGGLSSEIS 474
+ +H+I+ ++VD K+A +R KIFVGGL ++
Sbjct: 64 LQE-KHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLT 122
Query: 475 DDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGK 642
D+E R +F +G + +V + +D+ N+ +GF F++F+SE V+ +L + GK
Sbjct: 123 DEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGK 178
Score = 68.5 bits (160), Expect = 4e-12
Identities = 35/126 (27%), Positives = 65/126 (51%), Gaps = 3/126 (2%)
Frame = +1
Query: 94 QDITTDNQLNGNAENGGGDSQDHNSAEAPGRD---DDRKLFVGGLSWETTDKELRDHFGA 264
+++ ++ + G + + N++ + G D +K+FVGGL TD+E R +F
Sbjct: 73 REVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEV 132
Query: 265 YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGKI 444
YG + + + D T R RGF F+ F + +++D V+ H ++ K+V+ K+A +
Sbjct: 133 YGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPKDANP 192
Query: 445 FVGGLS 462
GG S
Sbjct: 193 GGGGRS 198
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 118 bits (283), Expect = 4e-27
Identities = 64/168 (38%), Positives = 99/168 (58%), Gaps = 11/168 (6%)
Frame = +1
Query: 142 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSR 321
G S++ N G K+F+GGL +TT+ HFG YGEI + D +TG+ R
Sbjct: 2 GSRSRNDNFQSGDGASPG-KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPR 60
Query: 322 GFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA--KARHG---------KIFVGGLSSE 468
GF FI F P +DKV+ H IN K+V+ K+ K G KIFVGG+ S
Sbjct: 61 GFGFITFADPSVVDKVIE-DTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPST 119
Query: 469 ISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 612
+++DE+++FF+++G ++E ++ D N+ +GF F+ F+SE+VV++LL
Sbjct: 120 VTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELL 167
Score = 65.7 bits (153), Expect = 3e-11
Identities = 34/111 (30%), Positives = 57/111 (51%), Gaps = 6/111 (5%)
Frame = +1
Query: 196 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 375
+K+FVGG+ T+ EL+D F YG + V D T RSRGF F++F + E +D++++
Sbjct: 109 KKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLS 168
Query: 376 AG------EHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFG 510
G + + KK +PKK+ R + S+D ++ +G
Sbjct: 169 KGNMIDMADTQVEIKKAEPKKSLNRSPPSYGSHPRGRSSNDSYASYGGPYG 219
Score = 45.6 bits (103), Expect = 3e-05
Identities = 24/72 (33%), Positives = 38/72 (52%)
Frame = +1
Query: 427 ARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVND 606
A GKIF+GGL + ++ F ++G I + + D+ Q +GF FITF VV+
Sbjct: 16 ASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDK 75
Query: 607 LLKTPKRTIGGK 642
+++ I GK
Sbjct: 76 VIE-DTHVINGK 86
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 118 bits (283), Expect = 4e-27
Identities = 64/168 (38%), Positives = 99/168 (58%), Gaps = 11/168 (6%)
Frame = +1
Query: 142 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSR 321
G S++ N G K+F+GGL +TT+ HFG YGEI + D +TG+ R
Sbjct: 2 GSRSRNDNFQSGDGASPG-KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPR 60
Query: 322 GFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA--KARHG---------KIFVGGLSSE 468
GF FI F P +DKV+ H IN K+V+ K+ K G KIFVGG+ S
Sbjct: 61 GFGFITFADPSVVDKVIE-DTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPST 119
Query: 469 ISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 612
+++DE+++FF+++G ++E ++ D N+ +GF F+ F+SE+VV++LL
Sbjct: 120 VTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELL 167
Score = 60.5 bits (140), Expect = 9e-10
Identities = 25/62 (40%), Positives = 39/62 (62%)
Frame = +1
Query: 196 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 375
+K+FVGG+ T+ EL+D F YG + V D T RSRGF F++F + E +D++++
Sbjct: 109 KKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLS 168
Query: 376 AG 381
G
Sbjct: 169 KG 170
Score = 45.6 bits (103), Expect = 3e-05
Identities = 24/72 (33%), Positives = 38/72 (52%)
Frame = +1
Query: 427 ARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVND 606
A GKIF+GGL + ++ F ++G I + + D+ Q +GF FITF VV+
Sbjct: 16 ASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDK 75
Query: 607 LLKTPKRTIGGK 642
+++ I GK
Sbjct: 76 VIE-DTHVINGK 86
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 116 bits (278), Expect = 2e-26
Identities = 68/187 (36%), Positives = 99/187 (52%), Gaps = 9/187 (4%)
Frame = +1
Query: 94 QDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGE 273
+D D + + + E+ SQ H+ G D K+FVGGL+ ETT E HFG YGE
Sbjct: 11 EDEIHDPKPSEDIEDDDDKSQPHSGG---GVDSAGKIFVGGLARETTSAEFLKHFGKYGE 67
Query: 274 IESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHG----- 438
I + D TG+ RGF F+ + +DKV+ H I K+V+ K+ R
Sbjct: 68 ITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVI-QDNHIIIGKQVEIKRTIPRGSMSSND 126
Query: 439 ----KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVND 606
KIFVGG+ S + DDE + FF +FG + E ++ D + + +GF F+T+ESE +V+
Sbjct: 127 FKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDH 186
Query: 607 LLKTPKR 627
LL R
Sbjct: 187 LLAKGNR 193
Score = 47.6 bits (108), Expect = 7e-06
Identities = 23/67 (34%), Positives = 37/67 (55%)
Frame = +1
Query: 436 GKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 615
GKIFVGGL+ E + E F ++G I + + D+ Q +GF F+T+ VV+ +++
Sbjct: 42 GKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQ 101
Query: 616 TPKRTIG 636
IG
Sbjct: 102 DNHIIIG 108
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 113 bits (273), Expect = 7e-26
Identities = 65/173 (37%), Positives = 98/173 (56%), Gaps = 25/173 (14%)
Frame = +1
Query: 199 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 378
KLF+GG+SW+T ++ LRD+F YG++ + D TGR+RGF FIVF P ++V+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-M 65
Query: 379 GEHTINNKKVDPKKAKAR-------------------HG------KIFVGGLSSEISDDE 483
+H I+ + V+ KKA R HG KIFVGGL S I+++E
Sbjct: 66 DKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEE 125
Query: 484 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGK 642
+N+F +FGTI +V + +D + +GF FITF+S+ V+ +L + GK
Sbjct: 126 FKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGK 178
Score = 67.7 bits (158), Expect = 6e-12
Identities = 30/76 (39%), Positives = 48/76 (63%)
Frame = +1
Query: 196 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 375
+K+FVGGL T++E +++F +G I + V D NT R RGF FI F + +++D+V+
Sbjct: 110 KKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLH 169
Query: 376 AGEHTINNKKVDPKKA 423
H +N K V+ K+A
Sbjct: 170 KTFHELNGKLVEVKRA 185
Score = 50.4 bits (115), Expect = 1e-06
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Frame = +1
Query: 436 GKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFE----SEQVVN 603
GK+F+GG+S + ++ +R++FS +G ++E + D+ + +GF FI F SE+V+
Sbjct: 6 GKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIM 65
Query: 604 DLLKTPKRTIGGK 642
D RT+ K
Sbjct: 66 DKHIIDGRTVEAK 78
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 113 bits (273), Expect = 7e-26
Identities = 65/173 (37%), Positives = 98/173 (56%), Gaps = 25/173 (14%)
Frame = +1
Query: 199 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 378
KLF+GG+SW+T ++ LRD+F YG++ + D TGR+RGF FIVF P ++V+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-M 65
Query: 379 GEHTINNKKVDPKKAKAR-------------------HG------KIFVGGLSSEISDDE 483
+H I+ + V+ KKA R HG KIFVGGL S I+++E
Sbjct: 66 DKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEE 125
Query: 484 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGK 642
+N+F +FGTI +V + +D + +GF FITF+S+ V+ +L + GK
Sbjct: 126 FKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGK 178
Score = 67.7 bits (158), Expect = 6e-12
Identities = 30/76 (39%), Positives = 48/76 (63%)
Frame = +1
Query: 196 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 375
+K+FVGGL T++E +++F +G I + V D NT R RGF FI F + +++D+V+
Sbjct: 110 KKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLH 169
Query: 376 AGEHTINNKKVDPKKA 423
H +N K V+ K+A
Sbjct: 170 KTFHELNGKLVEVKRA 185
Score = 50.4 bits (115), Expect = 1e-06
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Frame = +1
Query: 436 GKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFE----SEQVVN 603
GK+F+GG+S + ++ +R++FS +G ++E + D+ + +GF FI F SE+V+
Sbjct: 6 GKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIM 65
Query: 604 DLLKTPKRTIGGK 642
D RT+ K
Sbjct: 66 DKHIIDGRTVEAK 78
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 113 bits (273), Expect = 7e-26
Identities = 65/173 (37%), Positives = 98/173 (56%), Gaps = 25/173 (14%)
Frame = +1
Query: 199 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 378
KLF+GG+SW+T ++ LRD+F YG++ + D TGR+RGF FIVF P ++V+
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-M 65
Query: 379 GEHTINNKKVDPKKAKAR-------------------HG------KIFVGGLSSEISDDE 483
+H I+ + V+ KKA R HG KIFVGGL S I+++E
Sbjct: 66 DKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEE 125
Query: 484 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGK 642
+N+F +FGTI +V + +D + +GF FITF+S+ V+ +L + GK
Sbjct: 126 FKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGK 178
Score = 67.7 bits (158), Expect = 6e-12
Identities = 30/76 (39%), Positives = 48/76 (63%)
Frame = +1
Query: 196 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 375
+K+FVGGL T++E +++F +G I + V D NT R RGF FI F + +++D+V+
Sbjct: 110 KKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLH 169
Query: 376 AGEHTINNKKVDPKKA 423
H +N K V+ K+A
Sbjct: 170 KTFHELNGKLVEVKRA 185
Score = 50.4 bits (115), Expect = 1e-06
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Frame = +1
Query: 436 GKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFE----SEQVVN 603
GK+F+GG+S + ++ +R++FS +G ++E + D+ + +GF FI F SE+V+
Sbjct: 6 GKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIM 65
Query: 604 DLLKTPKRTIGGK 642
D RT+ K
Sbjct: 66 DKHIIDGRTVEAK 78
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 113 bits (272), Expect = 1e-25
Identities = 68/191 (35%), Positives = 105/191 (54%), Gaps = 17/191 (8%)
Frame = +1
Query: 103 TTDNQLNGNA--ENGG---GDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAY 267
T D++ NG A + GG S DH + + KLFVGG+SWETT + ++FG +
Sbjct: 31 TFDDRRNGGAAVDTGGIQMKHSVDHRHSSS-SMSSPGKLFVGGVSWETTAETFANYFGKF 89
Query: 268 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPK---------- 417
GE+ + TD TG RGF F+ F +KV+ +H I+++KVD K
Sbjct: 90 GEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE-DHVIDDRKVDLKRTLPRGDKDT 148
Query: 418 --KAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESE 591
KA ++ KIFVGGL + +DE++N+F +G I+E ++ +D + +GF F+TF++E
Sbjct: 149 DIKAVSKTRKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTE 208
Query: 592 QVVNDLLKTPK 624
V+ L K
Sbjct: 209 DSVDRLFSDGK 219
Score = 68.9 bits (161), Expect = 3e-12
Identities = 31/80 (38%), Positives = 54/80 (67%), Gaps = 1/80 (1%)
Frame = +1
Query: 196 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 375
RK+FVGGL + EL+++F YG+I + D +TGRSRGF F+ F+ +S+D++ +
Sbjct: 157 RKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFS 216
Query: 376 AGE-HTINNKKVDPKKAKAR 432
G+ H + +K+V+ K+A+ +
Sbjct: 217 DGKVHELGDKQVEIKRAEPK 236
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 112 bits (270), Expect = 2e-25
Identities = 65/176 (36%), Positives = 99/176 (56%), Gaps = 28/176 (15%)
Frame = +1
Query: 199 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 378
KLF+GG+SW+T ++ L+++FG YG++ + D TGR+RGF FIVF P ++V+
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVI-M 74
Query: 379 GEHTINNKKVDPKKAKAR-------------------HG---------KIFVGGLSSEIS 474
+H I+ + V+ KKA R HG KIFVGGL S I+
Sbjct: 75 DKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSSIT 134
Query: 475 DDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGK 642
+ E +N+F +FGTI +V + +D + +GF FITF+SE+ V+ +L + GK
Sbjct: 135 EAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGK 190
Score = 68.5 bits (160), Expect = 4e-12
Identities = 32/76 (42%), Positives = 46/76 (60%)
Frame = +1
Query: 196 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 375
+K+FVGGL T+ E +++F +G I + V D NT R RGF FI F + ES+D V+
Sbjct: 122 KKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLH 181
Query: 376 AGEHTINNKKVDPKKA 423
H +N K V+ K+A
Sbjct: 182 KTFHELNGKMVEVKRA 197
Score = 48.0 bits (109), Expect = 5e-06
Identities = 20/69 (28%), Positives = 40/69 (57%)
Frame = +1
Query: 436 GKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 615
GK+F+GG+S + ++ ++ +F ++G ++E + D+T + +GF FI F V ++
Sbjct: 15 GKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVI- 73
Query: 616 TPKRTIGGK 642
K I G+
Sbjct: 74 MDKHIIDGR 82
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 111 bits (267), Expect = 4e-25
Identities = 60/169 (35%), Positives = 98/169 (57%), Gaps = 21/169 (12%)
Frame = +1
Query: 199 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 378
KLF+GG+SWET++ LRD+F ++GE+ + D TGR+RGF F+VF P ++V+
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 379 GEHTINNKKVDPKKAKARHG---------------------KIFVGGLSSEISDDEIRNF 495
+H I+ K V+ KKA R KIFVGGL+S +++ E + +
Sbjct: 67 -KHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKY 125
Query: 496 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGK 642
F++FG I +V + +D + +GF FI+++SE+ V+ +L+ + GK
Sbjct: 126 FAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGK 174
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/83 (38%), Positives = 49/83 (59%)
Frame = +1
Query: 175 APGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 354
+PG + +K+FVGGL+ T+ E + +F +G I + V D T R RGF FI + + E
Sbjct: 99 SPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEE 158
Query: 355 SIDKVMAAGEHTINNKKVDPKKA 423
++DKV+ H +N K V+ K A
Sbjct: 159 AVDKVLQKTFHELNGKMVEVKLA 181
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 111 bits (267), Expect = 4e-25
Identities = 60/169 (35%), Positives = 98/169 (57%), Gaps = 21/169 (12%)
Frame = +1
Query: 199 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 378
KLF+GG+SWET++ LRD+F ++GE+ + D TGR+RGF F+VF P ++V+
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 379 GEHTINNKKVDPKKAKARHG---------------------KIFVGGLSSEISDDEIRNF 495
+H I+ K V+ KKA R KIFVGGL+S +++ E + +
Sbjct: 67 -KHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKY 125
Query: 496 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGK 642
F++FG I +V + +D + +GF FI+++SE+ V+ +L+ + GK
Sbjct: 126 FAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGK 174
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/83 (38%), Positives = 49/83 (59%)
Frame = +1
Query: 175 APGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 354
+PG + +K+FVGGL+ T+ E + +F +G I + V D T R RGF FI + + E
Sbjct: 99 SPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEE 158
Query: 355 SIDKVMAAGEHTINNKKVDPKKA 423
++DKV+ H +N K V+ K A
Sbjct: 159 AVDKVLQKTFHELNGKMVEVKLA 181
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 108 bits (260), Expect = 3e-24
Identities = 56/176 (31%), Positives = 98/176 (55%), Gaps = 23/176 (13%)
Frame = +1
Query: 184 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 363
+ D+ KLF+GG+SW+T ++ L+++F ++GE+ + D TGR+RGF F+VF P ++
Sbjct: 2 QSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADP-AVA 60
Query: 364 KVMAAGEHTINNKKVDPKKA-----------------------KARHGKIFVGGLSSEIS 474
+++ +H I+ + V+ KKA R KIFVGGL S ++
Sbjct: 61 EIVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVT 120
Query: 475 DDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGK 642
+ + + +F +FGT +V + +D + +GF FIT++SE+ V +L + GK
Sbjct: 121 ESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGK 176
Score = 70.1 bits (164), Expect = 1e-12
Identities = 36/99 (36%), Positives = 52/99 (52%)
Frame = +1
Query: 127 NAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPN 306
N N S S PGR RK+FVGGL T+ + + +F +G + V D N
Sbjct: 87 NMVNRSNSSSIQGSPGGPGRT--RKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHN 144
Query: 307 TGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 423
T R RGF FI + + E+++KV+ H +N K V+ K+A
Sbjct: 145 TQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRA 183
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 108 bits (260), Expect = 3e-24
Identities = 56/176 (31%), Positives = 98/176 (55%), Gaps = 23/176 (13%)
Frame = +1
Query: 184 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 363
+ D+ KLF+GG+SW+T ++ L+++F ++GE+ + D TGR+RGF F+VF P ++
Sbjct: 2 QSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADP-AVA 60
Query: 364 KVMAAGEHTINNKKVDPKKA-----------------------KARHGKIFVGGLSSEIS 474
+++ +H I+ + V+ KKA R KIFVGGL S ++
Sbjct: 61 EIVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVT 120
Query: 475 DDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGK 642
+ + + +F +FGT +V + +D + +GF FIT++SE+ V +L + GK
Sbjct: 121 ESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGK 176
Score = 70.1 bits (164), Expect = 1e-12
Identities = 36/99 (36%), Positives = 52/99 (52%)
Frame = +1
Query: 127 NAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPN 306
N N S S PGR RK+FVGGL T+ + + +F +G + V D N
Sbjct: 87 NMVNRSNSSSIQGSPGGPGRT--RKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHN 144
Query: 307 TGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKA 423
T R RGF FI + + E+++KV+ H +N K V+ K+A
Sbjct: 145 TQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRA 183
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 104 bits (250), Expect = 4e-23
Identities = 59/176 (33%), Positives = 93/176 (52%), Gaps = 25/176 (14%)
Frame = +1
Query: 190 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 369
D KLF+GG+SW+T + LR++F +GE+ + V + TGR RGF F+ F P ID+V
Sbjct: 4 DQGKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRV 63
Query: 370 MAAGEHTINNKKVDPKKAKARH-------------------------GKIFVGGLSSEIS 474
+ +H I+N+ VD K+A +R KIFVGGL ++
Sbjct: 64 L-QDKHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALT 122
Query: 475 DDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGK 642
DE R +F +G + + + D+T + +GF F++F+SE V+ +L + GK
Sbjct: 123 SDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGK 178
Score = 62.9 bits (146), Expect = 2e-10
Identities = 29/76 (38%), Positives = 43/76 (56%)
Frame = +1
Query: 196 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 375
+K+FVGGL T E R +F YG + + D T R RGF F+ F + +S+D V+
Sbjct: 110 KKIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLH 169
Query: 376 AGEHTINNKKVDPKKA 423
H +N K+V+ K+A
Sbjct: 170 KTFHDLNGKQVEVKRA 185
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 93.9 bits (223), Expect = 8e-20
Identities = 49/150 (32%), Positives = 79/150 (52%), Gaps = 9/150 (6%)
Frame = +1
Query: 193 DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 372
+RKL V G+ W+ L+D+ +G++E V D +TGRSRGF ++ F + E +
Sbjct: 2 ERKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL 61
Query: 373 AAGEHTINNKKVDPKKAKARH---------GKIFVGGLSSEISDDEIRNFFSEFGTILEV 525
GEH + N+ ++ K A + +IFV + S +S+ + R+ F +G I ++
Sbjct: 62 -KGEHFLGNRILEVKVATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITDL 120
Query: 526 EMPFDKTKNQRKGFCFITFESEQVVNDLLK 615
MP D Q +G FITF S V DL++
Sbjct: 121 YMPKDYNSKQHRGIGFITFSSADSVEDLME 150
Score = 51.2 bits (117), Expect = 6e-07
Identities = 28/83 (33%), Positives = 40/83 (48%)
Frame = +1
Query: 160 HNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIV 339
+ E R K+FVG L E + +LRD+FG +G I+ + DP RGF F+
Sbjct: 228 YGRGEPTTRGIGNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVT 287
Query: 340 FKAPESIDKVMAAGEHTINNKKV 408
F D+V A H I ++V
Sbjct: 288 FAENGVADRV-ARRSHEICGQEV 309
Score = 49.2 bits (112), Expect = 2e-06
Identities = 23/66 (34%), Positives = 36/66 (54%)
Frame = +1
Query: 439 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 618
KIFVG L E S D++R++F FG I + +P D ++ +GF F+TF V + + +
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVARR 300
Query: 619 PKRTIG 636
G
Sbjct: 301 SHEICG 306
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 68.1 bits (159), Expect = 5e-12
Identities = 29/81 (35%), Positives = 51/81 (62%)
Frame = +1
Query: 196 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 375
+K+FVGGLS TT++E + +F +G + V D T R RGF F+ + + +S++ VM
Sbjct: 120 KKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQ 179
Query: 376 AGEHTINNKKVDPKKAKARHG 438
+ H +++K+V+ K+A + G
Sbjct: 180 SNFHELSDKRVEVKRAIPKEG 200
Score = 56.4 bits (130), Expect(2) = 4e-19
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Frame = +1
Query: 187 DDDR-KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 363
D DR KLFVGG++ ET+++ L+ +F YG + V + TG+ RGF F+ F +
Sbjct: 2 DYDRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVV 61
Query: 364 KVMAAGEHTINNKKVDPKKAKARH 435
K + H I K VD +KA +H
Sbjct: 62 KAL-RDTHFILGKPVDVRKAIRKH 84
Score = 55.6 bits (128), Expect(2) = 4e-19
Identities = 24/64 (37%), Positives = 42/64 (65%)
Frame = +1
Query: 427 ARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVND 606
+R KIFVGGLSS +++E +++F FG +V + D N+ +GF F+T++SE V
Sbjct: 117 SRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEV 176
Query: 607 LLKT 618
++++
Sbjct: 177 VMQS 180
Score = 48.0 bits (109), Expect = 5e-06
Identities = 21/61 (34%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Frame = +1
Query: 439 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESE-QVVNDLLK 615
K+FVGG++ E S++ ++ +FS +G +LE + +K + +GF F+ F ++ VV L
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRD 66
Query: 616 T 618
T
Sbjct: 67 T 67
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 80.2 bits (189), Expect = 1e-15
Identities = 51/167 (30%), Positives = 76/167 (45%), Gaps = 19/167 (11%)
Frame = +1
Query: 196 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 375
RK+FV GL W+T L D F YGEIE D +G+S+G+ FI+FK+ +
Sbjct: 128 RKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALK 187
Query: 376 AGEHTINNKKV------------DPKKAKARH-------GKIFVGGLSSEISDDEIRNFF 498
+ I + +P A A+H KI+V +S++I ++ FF
Sbjct: 188 QPQKKIGTRMTACQLASIGPVQGNPVVAPAQHFNPENVQRKIYVSNVSADIDPQKLLEFF 247
Query: 499 SEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGG 639
S FG I E + DK + KGF + S + L+ P +T G
Sbjct: 248 SRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEEPHKTFEG 294
Score = 46.0 bits (104), Expect = 2e-05
Identities = 24/76 (31%), Positives = 39/76 (51%)
Frame = +1
Query: 196 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 375
RK++V +S + ++L + F +GEIE + D TGR +GFA V+++ ES K +
Sbjct: 227 RKIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALE 286
Query: 376 AGEHTINNKKVDPKKA 423
T + KA
Sbjct: 287 EPHKTFEGHVLHCHKA 302
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 50.4 bits (115), Expect(2) = 5e-15
Identities = 20/60 (33%), Positives = 38/60 (63%)
Frame = +1
Query: 439 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 618
+++VG LS + D + + FSE G ++E + +D+ + KGF F+T++S Q V + +K+
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/109 (22%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Frame = +1
Query: 109 DNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESIN 288
D G + G + G +++VG LSW D L F G++
Sbjct: 175 DGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEAR 234
Query: 289 VKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT-INNKKVDPKKAKAR 432
V D ++GRS+GF F+ + + + + + + + ++ +++ +A+AR
Sbjct: 235 VIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEAR 283
Score = 48.0 bits (109), Expect(2) = 5e-15
Identities = 28/82 (34%), Positives = 41/82 (50%)
Frame = +1
Query: 193 DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 372
D KLFVG L + +L F + G +E + V D TGRSRGF F+ S+ +V
Sbjct: 90 DLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTM---SSVSEVE 146
Query: 373 AAGEHTINNKKVDPKKAKARHG 438
AA + N ++D + + G
Sbjct: 147 AAAQQ-FNGYELDGRPLRVNAG 167
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +1
Query: 439 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 588
K+FVG L + ++ F G + VE+ +DK + +GF F+T S
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSS 141
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 73.7 bits (173), Expect = 9e-14
Identities = 48/173 (27%), Positives = 79/173 (45%), Gaps = 25/173 (14%)
Frame = +1
Query: 196 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 375
RK+FV GL W+T + L + F YGEIE D +G+S+G+ FI++K+ +
Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALK 199
Query: 376 AGEHTINNKKVDPK------------------KAKARHG-------KIFVGGLSSEISDD 480
+ I ++ + A A+H KI+V + +E+
Sbjct: 200 QPQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQ 259
Query: 481 EIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGG 639
++ FFS+FG I E + DK + KGFC ++S + L+ P +T G
Sbjct: 260 KLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEG 312
Score = 50.0 bits (114), Expect = 1e-06
Identities = 23/70 (32%), Positives = 38/70 (54%)
Frame = +1
Query: 433 HGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 612
H KIFV GL + + + F ++G I + + FDK + KG+ FI ++S + L
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
Query: 613 KTPKRTIGGK 642
K P++ IG +
Sbjct: 199 KQPQKKIGSR 208
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/76 (28%), Positives = 37/76 (48%)
Frame = +1
Query: 196 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 375
+K++V + E ++L F +GEIE + D TGR +GF V+K+ ES + +
Sbjct: 245 KKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALE 304
Query: 376 AGEHTINNKKVDPKKA 423
T + +KA
Sbjct: 305 EPHKTFEGHILHCQKA 320
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 73.7 bits (173), Expect = 9e-14
Identities = 48/173 (27%), Positives = 79/173 (45%), Gaps = 25/173 (14%)
Frame = +1
Query: 196 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 375
RK+FV GL W+T + L + F YGEIE D +G+S+G+ FI++K+ +
Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALK 199
Query: 376 AGEHTINNKKVDPK------------------KAKARHG-------KIFVGGLSSEISDD 480
+ I ++ + A A+H KI+V + +E+
Sbjct: 200 QPQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQ 259
Query: 481 EIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGG 639
++ FFS+FG I E + DK + KGFC ++S + L+ P +T G
Sbjct: 260 KLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEG 312
Score = 50.0 bits (114), Expect = 1e-06
Identities = 23/70 (32%), Positives = 38/70 (54%)
Frame = +1
Query: 433 HGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 612
H KIFV GL + + + F ++G I + + FDK + KG+ FI ++S + L
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
Query: 613 KTPKRTIGGK 642
K P++ IG +
Sbjct: 199 KQPQKKIGSR 208
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/76 (28%), Positives = 37/76 (48%)
Frame = +1
Query: 196 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 375
+K++V + E ++L F +GEIE + D TGR +GF V+K+ ES + +
Sbjct: 245 KKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALE 304
Query: 376 AGEHTINNKKVDPKKA 423
T + +KA
Sbjct: 305 EPHKTFEGHILHCQKA 320
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 73.7 bits (173), Expect = 9e-14
Identities = 48/173 (27%), Positives = 79/173 (45%), Gaps = 25/173 (14%)
Frame = +1
Query: 196 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 375
RK+FV GL W+T + L + F YGEIE D +G+S+G+ FI++K+ +
Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALK 199
Query: 376 AGEHTINNKKVDPK------------------KAKARHG-------KIFVGGLSSEISDD 480
+ I ++ + A A+H KI+V + +E+
Sbjct: 200 QPQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQ 259
Query: 481 EIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGG 639
++ FFS+FG I E + DK + KGFC ++S + L+ P +T G
Sbjct: 260 KLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEG 312
Score = 50.0 bits (114), Expect = 1e-06
Identities = 23/70 (32%), Positives = 38/70 (54%)
Frame = +1
Query: 433 HGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 612
H KIFV GL + + + F ++G I + + FDK + KG+ FI ++S + L
Sbjct: 139 HRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNAL 198
Query: 613 KTPKRTIGGK 642
K P++ IG +
Sbjct: 199 KQPQKKIGSR 208
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/76 (28%), Positives = 37/76 (48%)
Frame = +1
Query: 196 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 375
+K++V + E ++L F +GEIE + D TGR +GF V+K+ ES + +
Sbjct: 245 KKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALE 304
Query: 376 AGEHTINNKKVDPKKA 423
T + +KA
Sbjct: 305 EPHKTFEGHILHCQKA 320
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 72.9 bits (171), Expect = 2e-13
Identities = 47/161 (29%), Positives = 77/161 (47%), Gaps = 12/161 (7%)
Frame = +1
Query: 196 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF----------K 345
RKLF+ GL+ +TT + LR F +YG++E V D TG+S+G+ F+ F K
Sbjct: 75 RKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALK 134
Query: 346 AP-ESID-KVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTIL 519
P + ID +V N+ + A KI+V + ++ D + N F +G +
Sbjct: 135 EPSKKIDGRVTVTQLAASGNQGTGSQIADISMRKIYVANVPFDMPADRLLNHFMAYGDVE 194
Query: 520 EVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGK 642
E + FDK + +GF +++ + L P + I GK
Sbjct: 195 EGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGK 235
Score = 51.2 bits (117), Expect = 6e-07
Identities = 26/76 (34%), Positives = 41/76 (53%)
Frame = +1
Query: 196 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 375
RK++V + ++ L +HF AYG++E + D TG+SRGFA V+K E +A
Sbjct: 167 RKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALA 226
Query: 376 AGEHTINNKKVDPKKA 423
I+ K ++ K A
Sbjct: 227 DPVKVIDGKHLNCKLA 242
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 72.9 bits (171), Expect = 2e-13
Identities = 47/161 (29%), Positives = 77/161 (47%), Gaps = 12/161 (7%)
Frame = +1
Query: 196 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF----------K 345
RKLF+ GL+ +TT + LR F +YG++E V D TG+S+G+ F+ F K
Sbjct: 75 RKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALK 134
Query: 346 AP-ESID-KVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTIL 519
P + ID +V N+ + A KI+V + ++ D + N F +G +
Sbjct: 135 EPSKKIDGRVTVTQLAASGNQGTGSQIADISMRKIYVANVPFDMPADRLLNHFMAYGDVE 194
Query: 520 EVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGK 642
E + FDK + +GF +++ + L P + I GK
Sbjct: 195 EGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGK 235
Score = 51.2 bits (117), Expect = 6e-07
Identities = 26/76 (34%), Positives = 41/76 (53%)
Frame = +1
Query: 196 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 375
RK++V + ++ L +HF AYG++E + D TG+SRGFA V+K E +A
Sbjct: 167 RKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALA 226
Query: 376 AGEHTINNKKVDPKKA 423
I+ K ++ K A
Sbjct: 227 DPVKVIDGKHLNCKLA 242
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/83 (38%), Positives = 49/83 (59%)
Frame = +1
Query: 175 APGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 354
+PG + +K+FVGGL+ T+ E + +F +G I + V D T R RGF FI + + E
Sbjct: 26 SPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEE 85
Query: 355 SIDKVMAAGEHTINNKKVDPKKA 423
++DKV+ H +N K V+ K A
Sbjct: 86 AVDKVLQKTFHELNGKMVEVKLA 108
Score = 62.1 bits (144), Expect = 3e-10
Identities = 29/96 (30%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Frame = +1
Query: 364 KVMAAGEHTINNKK---VDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMP 534
K + +H + NK + + KIFVGGL+S +++ E + +F++FG I +V +
Sbjct: 6 KAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVM 65
Query: 535 FDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGK 642
+D + +GF FI+++SE+ V+ +L+ + GK
Sbjct: 66 YDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGK 101
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 69.7 bits (163), Expect = 2e-12
Identities = 31/71 (43%), Positives = 44/71 (61%)
Frame = +1
Query: 199 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 378
K+FVGGL+WET + LR HF YGEI V D NTGRS+G+ F+ F+ PE+ + A
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACAD 84
Query: 379 GEHTINNKKVD 411
I+ ++ +
Sbjct: 85 PTPIIDGRRAN 95
Score = 50.8 bits (116), Expect = 8e-07
Identities = 23/68 (33%), Positives = 35/68 (51%)
Frame = +1
Query: 439 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 618
K+FVGGL+ E + +R F ++G ILE + DK + KG+ F+TF +
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACAD 84
Query: 619 PKRTIGGK 642
P I G+
Sbjct: 85 PTPIIDGR 92
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 68.5 bits (160), Expect = 4e-12
Identities = 29/53 (54%), Positives = 38/53 (71%)
Frame = +1
Query: 199 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 357
K+FVGGL+WET + LR HF YG+I V TD NTGRS+G+ F+ F+ PE+
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEA 77
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/68 (33%), Positives = 35/68 (51%)
Frame = +1
Query: 439 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 618
K+FVGGL+ E + +R F ++G ILE + DK + KG+ F+TF +
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVD 84
Query: 619 PKRTIGGK 642
P I G+
Sbjct: 85 PTPIIDGR 92
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 66.5 bits (155), Expect = 1e-11
Identities = 46/199 (23%), Positives = 90/199 (45%), Gaps = 25/199 (12%)
Frame = +1
Query: 91 AQDITTDNQLNGNAENG----GGDSQDHNS-------AEAPGRDDDRKLFVGGLSWETTD 237
+QD++ ++ G+A G G +S+ S AE P ++ KLFVG L+++
Sbjct: 104 SQDVSEGDESEGDASEGDVSEGDESEGDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNS 163
Query: 238 KELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA-GEHTINNKKVDP 414
+ L F G +E V + T +SRGF F+ + + + + + +N + +
Sbjct: 164 QALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTV 223
Query: 415 KKAKARHGK-------------IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQ 555
KA R + ++VG L ++ + + FSE G ++E + +D+ +
Sbjct: 224 NKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGR 283
Query: 556 RKGFCFITFESEQVVNDLL 612
+GF F+T +N+ +
Sbjct: 284 SRGFGFVTMSDVDELNEAI 302
Score = 45.6 bits (103), Expect = 3e-05
Identities = 18/60 (30%), Positives = 33/60 (55%)
Frame = +1
Query: 199 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 378
+++VG L W+ + L F +G++ V D TGRSRGF F+ + +++ ++A
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 66.1 bits (154), Expect = 2e-11
Identities = 28/71 (39%), Positives = 45/71 (63%)
Frame = +1
Query: 199 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 378
K+FVGGL+WET E+R +F +GEI + TD NTG+S+G+ F+ F+ +S + +A
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 379 GEHTINNKKVD 411
I+ +K +
Sbjct: 78 PNPVIDGRKAN 88
Score = 56.8 bits (131), Expect = 1e-08
Identities = 26/68 (38%), Positives = 37/68 (54%)
Frame = +1
Query: 439 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 618
K+FVGGL+ E DE+R +F +FG ILE + DK + KG+ F+TF +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 619 PKRTIGGK 642
P I G+
Sbjct: 78 PNPVIDGR 85
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 66.1 bits (154), Expect = 2e-11
Identities = 28/71 (39%), Positives = 45/71 (63%)
Frame = +1
Query: 199 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 378
K+FVGGL+WET E+R +F +GEI + TD NTG+S+G+ F+ F+ +S + +A
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 379 GEHTINNKKVD 411
I+ +K +
Sbjct: 78 PNPVIDGRKAN 88
Score = 56.8 bits (131), Expect = 1e-08
Identities = 26/68 (38%), Positives = 37/68 (54%)
Frame = +1
Query: 439 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 618
K+FVGGL+ E DE+R +F +FG ILE + DK + KG+ F+TF +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 619 PKRTIGGK 642
P I G+
Sbjct: 78 PNPVIDGR 85
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 65.3 bits (152), Expect = 3e-11
Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = +1
Query: 187 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 366
D + + F+GGL+W T+D+ LRD F YG + V D +GRSRGF FI F +++D+
Sbjct: 4 DPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDE 63
Query: 367 VMAA-GEHTINNKKVDPKKAKARHG 438
+AA ++ + + KA+ G
Sbjct: 64 AIAAMNGMDLDGRTITVDKAQPHQG 88
Score = 46.8 bits (106), Expect = 1e-05
Identities = 18/58 (31%), Positives = 38/58 (65%)
Frame = +1
Query: 439 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 612
+ F+GGL+ SD +R+ F ++G ++E ++ DK + +GF FITF+ ++ +++ +
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAI 65
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 64.1 bits (149), Expect = 8e-11
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Frame = +1
Query: 172 EAPGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKA 348
E+ RD R +FV G W+TT + L+ F +YGEIE +V D +TGR +G+ F++FK
Sbjct: 399 ESADRDIAQRNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKT 458
Query: 349 PESIDKVMAAGEHTINNKKVDPKKAKARHGK 441
+ + + E + N+ V A + GK
Sbjct: 459 RKGAREALKRPEKRMYNRIVVCNLASEKPGK 489
Score = 40.7 bits (91), Expect = 8e-04
Identities = 17/62 (27%), Positives = 33/62 (53%)
Frame = +1
Query: 442 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 621
IFV G + + + ++ F +G I E + DK + KG+ F+ F++ + + LK P
Sbjct: 410 IFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKRP 469
Query: 622 KR 627
++
Sbjct: 470 EK 471
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 62.9 bits (146), Expect = 2e-10
Identities = 43/193 (22%), Positives = 82/193 (42%), Gaps = 15/193 (7%)
Frame = +1
Query: 70 MANNDNFAQDIT-TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKEL 246
++ N+A++ D + G + + + P ++ KLFVG L ++ + L
Sbjct: 70 VSQTSNWAEEEEGEDGSIGGTSVTVDESFESEDGVGFPEPPEEAKLFVGNLPYDVDSQAL 129
Query: 247 RDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNKKVDPKKA 423
F G +E V + +T +SRGF F+ E +K V +N +++ +A
Sbjct: 130 AMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRA 189
Query: 424 KARHG-------------KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKG 564
R +I+VG L ++ + FSE G +++ + D+ + +G
Sbjct: 190 APRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRG 249
Query: 565 FCFITFESEQVVN 603
F F+ +E VN
Sbjct: 250 FGFVQMSNENEVN 262
Score = 45.2 bits (102), Expect = 4e-05
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +1
Query: 199 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 378
+++VG L W+ L F +G++ V +D TGRSRGF F+ ++ +AA
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 267
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 62.9 bits (146), Expect = 2e-10
Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Frame = +1
Query: 112 NQLNGNAENGGGDSQDHNSAEAPG--RDDDRKLFVGGLSWETTDKELRDHFGAYGEIESI 285
N+L+G G S + G R KLFVGGLSW T D L+ F ++GE+
Sbjct: 5 NKLSGILRQGVSQSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEA 64
Query: 286 NVKTDPNTGRSRGFAFIVFKAPESIDKVM 372
V D TGRSRGF F+ F +S + +
Sbjct: 65 TVIADRETGRSRGFGFVSFSCEDSANNAI 93
Score = 47.2 bits (107), Expect = 9e-06
Identities = 20/59 (33%), Positives = 33/59 (55%)
Frame = +1
Query: 439 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 615
K+FVGGLS D ++ F+ FG + E + D+ + +GF F++F E N+ +K
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 62.9 bits (146), Expect = 2e-10
Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Frame = +1
Query: 112 NQLNGNAENGGGDSQDHNSAEAPG--RDDDRKLFVGGLSWETTDKELRDHFGAYGEIESI 285
N+L+G G S + G R KLFVGGLSW T D L+ F ++GE+
Sbjct: 5 NKLSGILRQGVSQSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEA 64
Query: 286 NVKTDPNTGRSRGFAFIVFKAPESIDKVM 372
V D TGRSRGF F+ F +S + +
Sbjct: 65 TVIADRETGRSRGFGFVSFSCEDSANNAI 93
Score = 47.2 bits (107), Expect = 9e-06
Identities = 20/59 (33%), Positives = 33/59 (55%)
Frame = +1
Query: 439 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 615
K+FVGGLS D ++ F+ FG + E + D+ + +GF F++F E N+ +K
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 62.9 bits (146), Expect = 2e-10
Identities = 27/71 (38%), Positives = 44/71 (61%)
Frame = +1
Query: 199 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 378
K+FVGGL+WET E+R +F +GEI + TD TG+S+G+ F+ F+ +S + +A
Sbjct: 18 KVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVAD 77
Query: 379 GEHTINNKKVD 411
I+ +K +
Sbjct: 78 PNPVIDGRKAN 88
Score = 59.3 bits (137), Expect = 2e-09
Identities = 27/70 (38%), Positives = 38/70 (54%)
Frame = +1
Query: 433 HGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 612
H K+FVGGL+ E DE+R +F +FG ILE + DK + KG+ F+TF +
Sbjct: 16 HTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAV 75
Query: 613 KTPKRTIGGK 642
P I G+
Sbjct: 76 ADPNPVIDGR 85
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 62.5 bits (145), Expect = 2e-10
Identities = 44/139 (31%), Positives = 64/139 (46%), Gaps = 8/139 (5%)
Frame = +1
Query: 202 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 381
L+ G L + T+ L D F + S+ V D N RS G+A+I F P + M A
Sbjct: 51 LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNR-RSLGYAYINFSNPNDAYRAMEAL 109
Query: 382 EHT--------INNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPF 537
+T I DP + G IF+ L + I + + FS FGTIL ++
Sbjct: 110 NYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAM 169
Query: 538 DKTKNQRKGFCFITFESEQ 594
D T + KG+ F+ FE E+
Sbjct: 170 DVT-GRSKGYGFVQFEKEE 187
Score = 55.6 bits (128), Expect = 3e-08
Identities = 45/142 (31%), Positives = 68/142 (47%), Gaps = 14/142 (9%)
Frame = +1
Query: 202 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES----IDKV 369
+F+ L +K L + F ++G I S V D TGRS+G+ F+ F+ ES IDK+
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKL 196
Query: 370 --MAAGE------HTINNKKV--DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTIL 519
M + H I ++ D R ++V L EI +DE+R F +FG I
Sbjct: 197 NGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVIS 256
Query: 520 EVEMPFDKTKNQRKGFCFITFE 585
+ D++ N R F F+ FE
Sbjct: 257 SAVVMRDQSGNSR-CFGFVNFE 277
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = +1
Query: 202 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 354
L++ L D++L++ F YG + S V +P G SRGF F+ + PE
Sbjct: 334 LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPE 383
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 62.1 bits (144), Expect = 3e-10
Identities = 27/53 (50%), Positives = 36/53 (67%)
Frame = +1
Query: 199 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 357
K+FVGGL+WET +R +F +GEI V TD NTGRS+G+ F+ FK E+
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEA 75
Score = 51.2 bits (117), Expect = 6e-07
Identities = 24/68 (35%), Positives = 37/68 (54%)
Frame = +1
Query: 439 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 618
KIFVGGL+ E D +R +F +FG I+E + DK + KG+ F+TF+ + +
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQN 82
Query: 619 PKRTIGGK 642
I G+
Sbjct: 83 MNPVIDGR 90
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 62.1 bits (144), Expect = 3e-10
Identities = 42/151 (27%), Positives = 70/151 (46%), Gaps = 8/151 (5%)
Frame = +1
Query: 166 SAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 345
+AEA + L+VG L + L D F + ++ V D T RS G+A++ F
Sbjct: 35 AAEALQTHPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFA 93
Query: 346 APESIDKVMAAGEHT-INNKKV-------DPKKAKARHGKIFVGGLSSEISDDEIRNFFS 501
PE + M + + I ++ + DP + G +F+ L + I + + FS
Sbjct: 94 NPEDASRAMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFS 153
Query: 502 EFGTILEVEMPFDKTKNQRKGFCFITFESEQ 594
FGTIL ++ D + KG+ F+ FE E+
Sbjct: 154 SFGTILSCKVAMD-VVGRSKGYGFVQFEKEE 183
Score = 54.4 bits (125), Expect = 6e-08
Identities = 46/188 (24%), Positives = 90/188 (47%), Gaps = 25/188 (13%)
Frame = +1
Query: 154 QDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAF 333
QD +E+ ++V L E TD EL+ FG YG+I S V D +G SR F F
Sbjct: 211 QDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKD-QSGNSRSFGF 269
Query: 334 IVFKAPE----SIDKV--MAAGEHTI----NNKKVDPKK--------------AKARHGK 441
+ F +PE +++K+ ++ GE + KK D ++ K +
Sbjct: 270 VNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSN 329
Query: 442 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES-EQVVNDLLKT 618
+++ L ++D++++ FSE+G + ++ + ++ +GF F+ + + E+ + + +
Sbjct: 330 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMN-SQGLSRGFGFVAYSNPEEALLAMKEM 388
Query: 619 PKRTIGGK 642
+ IG K
Sbjct: 389 NGKMIGRK 396
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 61.7 bits (143), Expect = 4e-10
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Frame = +1
Query: 172 EAPGRDDD-RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKA 348
E+ RD R +FV GL W+TT + L+ F YGEI +V D +TGR++GF F++FK
Sbjct: 154 ESADRDSSQRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKT 213
Query: 349 PESIDKVMAAGEHTINNKKV 408
+ + E + N+ V
Sbjct: 214 RKGARAALKNPEKRMYNRTV 233
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/62 (30%), Positives = 33/62 (53%)
Frame = +1
Query: 442 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 621
IFV GL + + + ++ F +G I E + DK + KGF F+ F++ + LK P
Sbjct: 165 IFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALKNP 224
Query: 622 KR 627
++
Sbjct: 225 EK 226
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 61.7 bits (143), Expect = 4e-10
Identities = 28/78 (35%), Positives = 42/78 (53%)
Frame = +1
Query: 199 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 378
K+FVGG+S+ T + LR+ F YGE+ + D TGRSRGFAF+ F + E M
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQL 94
Query: 379 GEHTINNKKVDPKKAKAR 432
++ +++ A R
Sbjct: 95 DGQDLHGRRIRVNYATER 112
Score = 48.0 bits (109), Expect = 5e-06
Identities = 19/68 (27%), Positives = 41/68 (60%)
Frame = +1
Query: 439 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 618
KIFVGG+S + +R FS++G +++ ++ D+ + +GF F+TF S + ++ ++
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQL 94
Query: 619 PKRTIGGK 642
+ + G+
Sbjct: 95 DGQDLHGR 102
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 61.3 bits (142), Expect = 5e-10
Identities = 39/148 (26%), Positives = 77/148 (52%), Gaps = 9/148 (6%)
Frame = +1
Query: 187 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 366
++ KLFVG + ++ +L F + ++ +N+ D T SRG F++ + E DK
Sbjct: 15 EESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADK 74
Query: 367 VMAA--------GEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILE 522
++ A G +++ K + + K+FVG L +S+ E+++ FS++GTI +
Sbjct: 75 LVNACHNKKTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEVQSLFSKYGTIKD 134
Query: 523 VEMPFDKTKNQRKGFCFITFES-EQVVN 603
+++ + KG F+ +E+ EQ V+
Sbjct: 135 LQI-LRGAQQTSKGCAFLKYETKEQAVS 161
Score = 27.5 bits (58), Expect = 8.1
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +1
Query: 202 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 342
LF+ + E D+EL F ++G + S V D TG S+ F + F
Sbjct: 350 LFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGKLSF 396
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 61.3 bits (142), Expect = 5e-10
Identities = 39/148 (26%), Positives = 77/148 (52%), Gaps = 9/148 (6%)
Frame = +1
Query: 187 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 366
++ KLFVG + ++ +L F + ++ +N+ D T SRG F++ + E DK
Sbjct: 15 EESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADK 74
Query: 367 VMAA--------GEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILE 522
++ A G +++ K + + K+FVG L +S+ E+++ FS++GTI +
Sbjct: 75 LVNACHNKKTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEVQSLFSKYGTIKD 134
Query: 523 VEMPFDKTKNQRKGFCFITFES-EQVVN 603
+++ + KG F+ +E+ EQ V+
Sbjct: 135 LQI-LRGAQQTSKGCAFLKYETKEQAVS 161
Score = 31.5 bits (68), Expect = 0.50
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = +1
Query: 202 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV--MA 375
LF+ + E D+EL F ++G + S V D TG S+ F F+ + + + M
Sbjct: 351 LFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDMM 410
Query: 376 AGEHTINNKKV 408
G H + KK+
Sbjct: 411 NGRH-LGGKKL 420
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 61.3 bits (142), Expect = 5e-10
Identities = 34/130 (26%), Positives = 63/130 (48%), Gaps = 2/130 (1%)
Frame = +1
Query: 199 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 378
++F+GGL + +++LRD GEI + + D ++G S+G+AF+ FK + K +
Sbjct: 117 EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEE 176
Query: 379 GEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILE-VEMPFDKTKNQ 555
K ++F+G + ++DE R + G +E +E+ D T
Sbjct: 177 LHSKEFKGKTIRCSLSETKNRLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTT 236
Query: 556 R-KGFCFITF 582
R +GF F+ +
Sbjct: 237 RNRGFAFVLY 246
Score = 48.4 bits (110), Expect = 4e-06
Identities = 18/62 (29%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Frame = +1
Query: 433 HG-KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDL 609
HG ++F+GGL ++ ++++R+ E G I EV + D+ KG+ F+ F+++ V
Sbjct: 114 HGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKA 173
Query: 610 LK 615
++
Sbjct: 174 IE 175
Score = 32.3 bits (70), Expect = 0.29
Identities = 25/110 (22%), Positives = 48/110 (43%), Gaps = 1/110 (0%)
Frame = +1
Query: 100 ITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIE 279
I ++ +L GNA + + + L+V + T+ ++L++ F +GE+
Sbjct: 260 IDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVT 319
Query: 280 SINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVDPKKAK 426
I T P G R F F+ + S K + E + +N + ++ AK
Sbjct: 320 KI--VTPPGKGGKRDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAK 367
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 60.9 bits (141), Expect = 7e-10
Identities = 32/78 (41%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Frame = +1
Query: 172 EAPGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKA 348
EA RD RK+FV GL WETT + L F YGEIE V D TG+++GF F++FK
Sbjct: 95 EAADRDVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKT 154
Query: 349 PESIDKVMAAGEHTINNK 402
+ + + + I N+
Sbjct: 155 RKGAKEALKEPKKRILNR 172
Score = 49.2 bits (112), Expect = 2e-06
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Frame = +1
Query: 340 FKAPESIDKVMAAGE--HTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGT 513
+ + +D V +A +I + V+ H KIFV GL E + + + F +G
Sbjct: 70 YSKDQLVDLVCSASRIGSSIYSAVVEAADRDVTHRKIFVYGLPWETTRETLVGVFEGYGE 129
Query: 514 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTI 633
I E + DK + KGF F+ F++ + + LK PK+ I
Sbjct: 130 IEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRI 169
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 60.9 bits (141), Expect = 7e-10
Identities = 32/78 (41%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Frame = +1
Query: 172 EAPGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKA 348
EA RD RK+FV GL WETT + L F YGEIE V D TG+++GF F++FK
Sbjct: 95 EAADRDVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKT 154
Query: 349 PESIDKVMAAGEHTINNK 402
+ + + + I N+
Sbjct: 155 RKGAKEALKEPKKRILNR 172
Score = 49.2 bits (112), Expect = 2e-06
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Frame = +1
Query: 340 FKAPESIDKVMAAGE--HTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGT 513
+ + +D V +A +I + V+ H KIFV GL E + + + F +G
Sbjct: 70 YSKDQLVDLVCSASRIGSSIYSAVVEAADRDVTHRKIFVYGLPWETTRETLVGVFEGYGE 129
Query: 514 ILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTI 633
I E + DK + KGF F+ F++ + + LK PK+ I
Sbjct: 130 IEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKEPKKRI 169
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 60.9 bits (141), Expect = 7e-10
Identities = 47/172 (27%), Positives = 77/172 (44%), Gaps = 13/172 (7%)
Frame = +1
Query: 112 NQLNGNAENGGGDSQDHNSAEAPGRDDD-RKLFVGGLSWETTDKELRDHFGAYGEIESIN 288
N+LN A NG ++ + R +F+ L K L + F A+G I S
Sbjct: 104 NELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCK 163
Query: 289 VKTDPNTGRSRGFAFIVFKAPESIDKVM-AAGEHTINNKKV-----------DPKKAKAR 432
V DP+ G+S+G+ F+ + E+ + +N+K+V DP K +
Sbjct: 164 VAVDPS-GQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVK 222
Query: 433 HGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 588
++V LS +SD+E+ F EFG + D + + KGF F+ FE+
Sbjct: 223 FTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRD-GEGKSKGFGFVNFEN 273
Score = 50.4 bits (115), Expect = 1e-06
Identities = 25/67 (37%), Positives = 34/67 (50%)
Frame = +1
Query: 172 EAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 351
EA + L+V L TD +LR+HF +G I S V DP +G SRG F+ F P
Sbjct: 319 EAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDP-SGVSRGSGFVAFSTP 377
Query: 352 ESIDKVM 372
E + +
Sbjct: 378 EEATRAI 384
Score = 41.5 bits (93), Expect = 5e-04
Identities = 39/155 (25%), Positives = 70/155 (45%), Gaps = 24/155 (15%)
Frame = +1
Query: 202 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK-APESIDKVMAA 378
++V LS +D+EL FG +G S + D G+S+GF F+ F+ + ++ V A
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRD-GEGKSKGFGFVNFENSDDAARAVDAL 284
Query: 379 GEHTINNKKVDPKKA-----------------------KARHGKIFVGGLSSEISDDEIR 489
T ++K+ KA K++ ++V L ++DD++R
Sbjct: 285 NGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLR 344
Query: 490 NFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 594
F+ FGTI ++ D + R G F+ F + +
Sbjct: 345 EHFAPFGTITSCKVMRDPSGVSR-GSGFVAFSTPE 378
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 60.9 bits (141), Expect = 7e-10
Identities = 27/71 (38%), Positives = 43/71 (60%)
Frame = +1
Query: 199 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 378
K+FVGGL+WET LR++F +G+I V TD ++GRS+G+ F+ F PE+ K
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 379 GEHTINNKKVD 411
I+ ++ +
Sbjct: 68 PAPVIDGRRAN 78
Score = 52.0 bits (119), Expect = 3e-07
Identities = 24/68 (35%), Positives = 37/68 (54%)
Frame = +1
Query: 439 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 618
K+FVGGL+ E +RN+F +FG I+E + DK+ + KG+ F+TF +
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 619 PKRTIGGK 642
P I G+
Sbjct: 68 PAPVIDGR 75
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 60.9 bits (141), Expect = 7e-10
Identities = 27/71 (38%), Positives = 43/71 (60%)
Frame = +1
Query: 199 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 378
K+FVGGL+WET LR++F +G+I V TD ++GRS+G+ F+ F PE+ K
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 379 GEHTINNKKVD 411
I+ ++ +
Sbjct: 68 PAPVIDGRRAN 78
Score = 52.0 bits (119), Expect = 3e-07
Identities = 24/68 (35%), Positives = 37/68 (54%)
Frame = +1
Query: 439 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 618
K+FVGGL+ E +RN+F +FG I+E + DK+ + KG+ F+TF +
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 619 PKRTIGGK 642
P I G+
Sbjct: 68 PAPVIDGR 75
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 60.5 bits (140), Expect = 9e-10
Identities = 39/170 (22%), Positives = 80/170 (47%), Gaps = 14/170 (8%)
Frame = +1
Query: 127 NAENGGGDSQDHNS---AEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKT 297
+ + G DH S + R KLFVG + T++E+R +F +G + + +
Sbjct: 94 SGQKRGYPISDHGSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIK 153
Query: 298 DPNTGRSRGFAFIVFKAPESIDKVMAA---------GEHTINNKKVDPKKAK--ARHGKI 444
D TG+ +G F+ + + D+ + A G + + D ++ + K+
Sbjct: 154 DKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFKL 213
Query: 445 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 594
FVG L+ + ++ E+ F +FG + +V + D+ + Q +G F+ + S++
Sbjct: 214 FVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYR-QSRGCGFVKYSSKE 262
Score = 47.6 bits (108), Expect = 7e-06
Identities = 21/70 (30%), Positives = 39/70 (55%)
Frame = +1
Query: 439 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 618
K+FVG + +++EIR +F + G +LEV + DK Q++G CF+ + + + + ++
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 619 PKRTIGGKGG 648
I GG
Sbjct: 181 LHNQITLPGG 190
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 60.5 bits (140), Expect = 9e-10
Identities = 39/170 (22%), Positives = 80/170 (47%), Gaps = 14/170 (8%)
Frame = +1
Query: 127 NAENGGGDSQDHNS---AEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKT 297
+ + G DH S + R KLFVG + T++E+R +F +G + + +
Sbjct: 94 SGQKRGYPISDHGSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIK 153
Query: 298 DPNTGRSRGFAFIVFKAPESIDKVMAA---------GEHTINNKKVDPKKAK--ARHGKI 444
D TG+ +G F+ + + D+ + A G + + D ++ + K+
Sbjct: 154 DKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFKL 213
Query: 445 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 594
FVG L+ + ++ E+ F +FG + +V + D+ + Q +G F+ + S++
Sbjct: 214 FVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYR-QSRGCGFVKYSSKE 262
Score = 47.6 bits (108), Expect = 7e-06
Identities = 21/70 (30%), Positives = 39/70 (55%)
Frame = +1
Query: 439 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 618
K+FVG + +++EIR +F + G +LEV + DK Q++G CF+ + + + + ++
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 619 PKRTIGGKGG 648
I GG
Sbjct: 181 LHNQITLPGG 190
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 60.5 bits (140), Expect = 9e-10
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Frame = +1
Query: 187 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-D 363
D + + FVGGL+W T D+ L F YG++ + D TGRSRGF F+ FK +++ D
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64
Query: 364 KVMAAGEHTINNKKVDPKKAKAR 432
+ ++ + + +A++R
Sbjct: 65 AIEGMNGQDLDGRSITVNEAQSR 87
Score = 43.2 bits (97), Expect = 2e-04
Identities = 16/59 (27%), Positives = 36/59 (61%)
Frame = +1
Query: 439 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 615
+ FVGGL+ D + F+++G +++ ++ D+ + +GF F+TF+ E+ + D ++
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIE 67
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 60.5 bits (140), Expect = 9e-10
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Frame = +1
Query: 187 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-D 363
D + + FVGGL+W T D+ L F YG++ + D TGRSRGF F+ FK +++ D
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64
Query: 364 KVMAAGEHTINNKKVDPKKAKAR 432
+ ++ + + +A++R
Sbjct: 65 AIEGMNGQDLDGRSITVNEAQSR 87
Score = 43.2 bits (97), Expect = 2e-04
Identities = 16/59 (27%), Positives = 36/59 (61%)
Frame = +1
Query: 439 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 615
+ FVGGL+ D + F+++G +++ ++ D+ + +GF F+TF+ E+ + D ++
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIE 67
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 59.7 bits (138), Expect = 2e-09
Identities = 26/48 (54%), Positives = 31/48 (64%)
Frame = +1
Query: 199 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 342
KLF+GGLSW T D LRD F +G++ V D TGRSRGF F+ F
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNF 83
Score = 44.0 bits (99), Expect = 9e-05
Identities = 17/51 (33%), Positives = 31/51 (60%)
Frame = +1
Query: 439 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESE 591
K+F+GGLS D +R+ F+ FG +++ ++ D+ + +GF F+ F E
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDE 86
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 59.7 bits (138), Expect = 2e-09
Identities = 26/48 (54%), Positives = 31/48 (64%)
Frame = +1
Query: 199 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 342
KLF+GGLSW T D LRD F +G++ V D TGRSRGF F+ F
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNF 83
Score = 44.0 bits (99), Expect = 9e-05
Identities = 17/51 (33%), Positives = 31/51 (60%)
Frame = +1
Query: 439 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESE 591
K+F+GGLS D +R+ F+ FG +++ ++ D+ + +GF F+ F E
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDE 86
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 59.7 bits (138), Expect = 2e-09
Identities = 41/172 (23%), Positives = 76/172 (44%), Gaps = 8/172 (4%)
Frame = +1
Query: 124 GNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDP 303
G GGGD H + + L+VG L + TD +L D+F ++ S+ V D
Sbjct: 30 GIGVGGGGDGVTHGALCS--------LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDA 81
Query: 304 NTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV--------DPKKAKARHGKIFVGGL 459
T S G+ ++ + + +K M ++ N K+ D ++ G +FV L
Sbjct: 82 ATNTSLGYGYVNYSNTDDAEKAMQKLNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNL 141
Query: 460 SSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 615
+ + + FS GTI+ ++ D Q +G+ F+ F++E + ++
Sbjct: 142 DKSVDNKTLHEAFSGCGTIVSCKVATDH-MGQSRGYGFVQFDTEDSAKNAIE 192
Score = 54.8 bits (126), Expect = 5e-08
Identities = 53/176 (30%), Positives = 79/176 (44%), Gaps = 29/176 (16%)
Frame = +1
Query: 202 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 381
++V LS TTD EL+ FG YG I S V D G+SR F F+ F+ PE + + A
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRD-GDGKSRCFGFVNFENPEDAARAVEA- 284
Query: 382 EHTINNKKVDPKK---AKARH-------------------GKIFVG------GLSSEISD 477
+N KK D K+ KA+ G F G L ++D
Sbjct: 285 ---LNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTD 341
Query: 478 DEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK-RTIGGK 642
+++R F+EFGTI ++ D + KG F+ F + + +L + +GGK
Sbjct: 342 EKLRELFAEFGTITSCKVMRDPS-GTSKGSGFVAFSAASEASRVLNEMNGKMVGGK 396
Score = 45.2 bits (102), Expect = 4e-05
Identities = 23/72 (31%), Positives = 37/72 (51%)
Frame = +1
Query: 157 DHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFI 336
+ S++ + D L+V L TD++LR+ F +G I S V DP +G S+G F+
Sbjct: 315 EQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDP-SGTSKGSGFV 373
Query: 337 VFKAPESIDKVM 372
F A +V+
Sbjct: 374 AFSAASEASRVL 385
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 59.3 bits (137), Expect = 2e-09
Identities = 22/48 (45%), Positives = 33/48 (68%)
Frame = +1
Query: 199 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 342
KLF+GGLSW ++ L+D F ++GE+ + + D +GRSRGF F+ F
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDF 89
Score = 51.2 bits (117), Expect = 6e-07
Identities = 25/69 (36%), Positives = 40/69 (57%)
Frame = +1
Query: 439 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 618
K+F+GGLS + + +++ FS FG + EV + +DK + +GF F+ F E D L +
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEE---GDAL-S 97
Query: 619 PKRTIGGKG 645
K + GKG
Sbjct: 98 AKDAMDGKG 106
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 59.3 bits (137), Expect = 2e-09
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Frame = +1
Query: 193 DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKV 369
+ ++FVGGLSW+ T+++L F YG+I + +TGR RGF FI F D +
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70
Query: 370 MAAGEHTINNKKVDPKKAKARHG 438
+ NK + KA+ + G
Sbjct: 71 KHMHGRELGNKVISVNKAEPKVG 93
Score = 46.0 bits (104), Expect = 2e-05
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Frame = +1
Query: 439 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK- 615
+IFVGGLS ++++ ++ + F +G I E ++ + + +GF FITF + +D +K
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 616 TPKRTIGGK 642
R +G K
Sbjct: 73 MHGRELGNK 81
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 59.3 bits (137), Expect = 2e-09
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Frame = +1
Query: 193 DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKV 369
+ ++FVGGLSW+ T+++L F YG+I + +TGR RGF FI F D +
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70
Query: 370 MAAGEHTINNKKVDPKKAKARHG 438
+ NK + KA+ + G
Sbjct: 71 KHMHGRELGNKVISVNKAEPKVG 93
Score = 46.0 bits (104), Expect = 2e-05
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Frame = +1
Query: 439 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK- 615
+IFVGGLS ++++ ++ + F +G I E ++ + + +GF FITF + +D +K
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 616 TPKRTIGGK 642
R +G K
Sbjct: 73 MHGRELGNK 81
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 59.3 bits (137), Expect = 2e-09
Identities = 44/155 (28%), Positives = 77/155 (49%), Gaps = 13/155 (8%)
Frame = +1
Query: 169 AEAPGRDDDR-KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 345
AE +++R KLFVG + T+ +L F + + +N+ + T RG F+
Sbjct: 2 AEETMENEERVKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCP 61
Query: 346 APESIDKVMAAGEHTINNKKV-----DPKKAKARHG-------KIFVGGLSSEISDDEIR 489
E DKV+ ++ +NKK P + K G K+FVG L +S+ E++
Sbjct: 62 TREDADKVI----NSFHNKKTLPGASSPLQVKYADGELERLEHKLFVGMLPKNVSETEVQ 117
Query: 490 NFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 594
+ FSE+GTI ++++ + KG F+ +ES++
Sbjct: 118 SLFSEYGTIKDLQI-LRGSLQTSKGCLFLKYESKE 151
Score = 37.5 bits (83), Expect = 0.008
Identities = 18/69 (26%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Frame = +1
Query: 439 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 618
K+FVG + +++ ++ F EF + EV + +KT +G CF+T + + + ++ +
Sbjct: 13 KLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVINS 72
Query: 619 --PKRTIGG 639
K+T+ G
Sbjct: 73 FHNKKTLPG 81
Score = 34.7 bits (76), Expect = 0.054
Identities = 22/77 (28%), Positives = 38/77 (49%)
Frame = +1
Query: 202 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 381
LF+ + E D+EL F +G++ S V D TG S+ F FI + + + +
Sbjct: 332 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAI--- 388
Query: 382 EHTINNKKVDPKKAKAR 432
+T+N ++ KK K +
Sbjct: 389 -NTMNGCQLSGKKLKVQ 404
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 58.8 bits (136), Expect = 3e-09
Identities = 42/155 (27%), Positives = 80/155 (51%), Gaps = 12/155 (7%)
Frame = +1
Query: 166 SAEAPG--RDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIV 339
S AP R+ +FV L T+ L+D F +G I S V T + G+SRG+ F+
Sbjct: 100 SVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLED-GKSRGYGFVQ 158
Query: 340 FK-------APESIDKVMAAGEHTINNK---KVDPKKAKARHGKIFVGGLSSEISDDEIR 489
F+ A ++++ + A + K K D K + ++ +++ L +++S+D +R
Sbjct: 159 FEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLR 218
Query: 490 NFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 594
F+EFG I+ + + D+ + R G+ F+ F++ +
Sbjct: 219 EKFAEFGKIVSLAIAKDENRLCR-GYAFVNFDNPE 252
Score = 50.8 bits (116), Expect = 8e-07
Identities = 42/163 (25%), Positives = 77/163 (47%), Gaps = 24/163 (14%)
Frame = +1
Query: 202 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI------- 360
L++ L + ++ LR+ F +G+I S+ + D N RG+AF+ F PE
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENR-LCRGYAFVNFDNPEDARRAAETV 261
Query: 361 ------DKVMAAG--------EHTINNK---KVDPKKAKARHGKIFVGGLSSEISDDEIR 489
K + G E + + K + +K A+ I+V ++ ++++E+R
Sbjct: 262 NGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELR 321
Query: 490 NFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 618
FS+ GTI ++ D+ K + KGF F+ F + + D +KT
Sbjct: 322 KHFSQCGTITSTKLMCDE-KGKSKGFGFVCFSTPEEAIDAVKT 363
Score = 49.2 bits (112), Expect = 2e-06
Identities = 33/152 (21%), Positives = 70/152 (46%), Gaps = 8/152 (5%)
Frame = +1
Query: 202 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 381
L+VG L T+ L D F + + S+ + D ++GRS + + F + + + +
Sbjct: 26 LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKK 85
Query: 382 EHTINNKKV--------DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPF 537
+++ N K+ P + G +FV L +++ +++ F +FG I+ ++
Sbjct: 86 NNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVA- 144
Query: 538 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTI 633
+ +G+ F+ FE E + ++T TI
Sbjct: 145 TLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTI 176
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 58.8 bits (136), Expect = 3e-09
Identities = 30/94 (31%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Frame = +1
Query: 163 NSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 342
+ AE PG L+V GLS T+++L DHF G++ +++ DP T SRGF FI
Sbjct: 68 SDAENPGNS----LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISM 123
Query: 343 KAPESIDKVMAAGEHTI-NNKKVDPKKAKARHGK 441
K+ ++ + + +H++ + + +KA+ R G+
Sbjct: 124 KSVGDANRCIRSLDHSVLQGRVITVEKARRRRGR 157
Score = 35.1 bits (77), Expect = 0.041
Identities = 14/59 (23%), Positives = 34/59 (57%)
Frame = +1
Query: 442 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 618
++V GLS +++ ++ + F++ G + +V + D + +GF FI+ +S N +++
Sbjct: 77 LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRS 135
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 58.0 bits (134), Expect = 5e-09
Identities = 25/71 (35%), Positives = 41/71 (57%)
Frame = +1
Query: 199 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 378
K+FVGGL+WET + ++ HF +GEI V TD +GRS+G+ F+ F+ E+
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 379 GEHTINNKKVD 411
I+ ++ +
Sbjct: 74 ATPVIDGRRAN 84
Score = 47.6 bits (108), Expect = 7e-06
Identities = 22/68 (32%), Positives = 34/68 (50%)
Frame = +1
Query: 439 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 618
K+FVGGL+ E + ++ F +FG ILE + DK + KG+ F+TF +
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 619 PKRTIGGK 642
I G+
Sbjct: 74 ATPVIDGR 81
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 58.0 bits (134), Expect = 5e-09
Identities = 25/71 (35%), Positives = 41/71 (57%)
Frame = +1
Query: 199 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 378
K+FVGGL+WET + ++ HF +GEI V TD +GRS+G+ F+ F+ E+
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 379 GEHTINNKKVD 411
I+ ++ +
Sbjct: 74 ATPVIDGRRAN 84
Score = 47.6 bits (108), Expect = 7e-06
Identities = 22/68 (32%), Positives = 34/68 (50%)
Frame = +1
Query: 439 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 618
K+FVGGL+ E + ++ F +FG ILE + DK + KG+ F+TF +
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 619 PKRTIGGK 642
I G+
Sbjct: 74 ATPVIDGR 81
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 58.0 bits (134), Expect = 5e-09
Identities = 25/71 (35%), Positives = 41/71 (57%)
Frame = +1
Query: 199 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 378
K+FVGGL+WET + ++ HF +GEI V TD +GRS+G+ F+ F+ E+
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 379 GEHTINNKKVD 411
I+ ++ +
Sbjct: 74 ATPVIDGRRAN 84
Score = 47.6 bits (108), Expect = 7e-06
Identities = 22/68 (32%), Positives = 34/68 (50%)
Frame = +1
Query: 439 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 618
K+FVGGL+ E + ++ F +FG ILE + DK + KG+ F+TF +
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 619 PKRTIGGK 642
I G+
Sbjct: 74 ATPVIDGR 81
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 57.2 bits (132), Expect = 9e-09
Identities = 42/162 (25%), Positives = 73/162 (45%), Gaps = 17/162 (10%)
Frame = +1
Query: 148 DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGF 327
D +D A+ P RD R +F + + T++++ + F G++ + + D N+ RS+G
Sbjct: 154 DKKDEPEAD-PERDQ-RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGV 211
Query: 328 AFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHG-----------------KIFVGG 456
+I F S+ +A + V K ++A K++VG
Sbjct: 212 GYIEFYDVMSVPMAIALSGQLFLGQPVMVKPSEAEKNLAQSNSTTVGGTGPADRKLYVGN 271
Query: 457 LSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 582
L +S+ ++R F FG + V++P D Q KGF FI F
Sbjct: 272 LHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQF 313
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 57.2 bits (132), Expect = 9e-09
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Frame = +1
Query: 121 NGNAENGGGDSQDHNSAEAPGRD--DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVK 294
+G+A GD + ++A D D +LFV L + T++EL +HF +G+I +++
Sbjct: 234 DGDAMEVEGDGKVAQESKAVSDDVLDTGRLFVRNLPYTATEEELMEHFSTFGKISEVHLV 293
Query: 295 TDPNTGRSRGFAFIVFKAPESIDKVM 372
D T RSRG A+I++ PE + M
Sbjct: 294 LDKETKRSRGIAYILYLIPECAARAM 319
Score = 42.7 bits (96), Expect = 2e-04
Identities = 41/159 (25%), Positives = 69/159 (43%), Gaps = 20/159 (12%)
Frame = +1
Query: 178 PGRDDDRKLFVGGLSWETTDKELRDHFG---AYGEIESINVKTDPNTGR--SRGFAFIVF 342
P + L V LS++TTD+ L+ HF G+I S+ + + S G+ F+ F
Sbjct: 563 PDVTESNVLNVKNLSFKTTDEGLKKHFTKLVKQGKILSVTIIKHKKNEKYLSSGYGFVEF 622
Query: 343 KAPESIDKVMAAGEHTI-----------NNKKVDPKKAKARHG----KIFVGGLSSEISD 477
+ E+ V + T+ NK+ D + K+ V ++ E +
Sbjct: 623 DSVETATSVYRDLQGTVLDGHALILRFCENKRSDKVGKDSNKDKPCTKLHVKNIAFEATK 682
Query: 478 DEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 594
E+R FS FG I + +P K Q G+ F+ F ++Q
Sbjct: 683 RELRQLFSPFGQIKSMRLP-KKNIGQYAGYAFVEFVTKQ 720
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 57.2 bits (132), Expect = 9e-09
Identities = 26/131 (19%), Positives = 71/131 (54%), Gaps = 3/131 (2%)
Frame = +1
Query: 199 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE-SIDKVMA 375
++++GG+ + T+ +L+ G+ GE+ + + + ++G +G+AF+ F++ + + + +
Sbjct: 93 EVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDT 152
Query: 376 AGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILE-VEMPFD-KTK 549
K++ +A+H ++F+G + + +I+ + G ++ VE+P + +
Sbjct: 153 LNNTDFRGKRIKCSTTQAKH-RLFLGNVPRNWMESDIKKAANRIGPGVQIVELPKEPQNM 211
Query: 550 NQRKGFCFITF 582
+ +GF FI +
Sbjct: 212 GRNRGFAFIEY 222
Score = 44.8 bits (101), Expect = 5e-05
Identities = 17/67 (25%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Frame = +1
Query: 433 HG-KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDL 609
HG ++++GG+ ++ ++ +++ F G + EV + +K KG+ F+TF S+ + +
Sbjct: 90 HGSEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEA 149
Query: 610 LKTPKRT 630
+ T T
Sbjct: 150 IDTLNNT 156
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 56.8 bits (131), Expect = 1e-08
Identities = 29/79 (36%), Positives = 42/79 (53%)
Frame = +1
Query: 187 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 366
D + K++V GL W T + L +F +GEI V D T RS+GF F+ F+ ES +
Sbjct: 6 DRETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATR 65
Query: 367 VMAAGEHTINNKKVDPKKA 423
HTI+ + V+ K A
Sbjct: 66 ACENPNHTIDGRTVNCKLA 84
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/71 (29%), Positives = 34/71 (47%)
Frame = +1
Query: 430 RHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDL 609
R KI+V GL + + ++F FG I+ ++ D + KGF F+TF +
Sbjct: 7 RETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRA 66
Query: 610 LKTPKRTIGGK 642
+ P TI G+
Sbjct: 67 CENPNHTIDGR 77
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 56.4 bits (130), Expect = 2e-08
Identities = 26/71 (36%), Positives = 41/71 (57%)
Frame = +1
Query: 199 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 378
+ FVGGL+W T D++L+ F +G++ + D +GRSRGF F+ FK +K M
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKD----EKAMRD 62
Query: 379 GEHTINNKKVD 411
+N K++D
Sbjct: 63 AIEEMNGKELD 73
Score = 49.6 bits (113), Expect = 2e-06
Identities = 18/59 (30%), Positives = 40/59 (67%)
Frame = +1
Query: 439 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 615
+ FVGGL+ +D++++ FS+FG +++ ++ D+ + +GF F+TF+ E+ + D ++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 56.4 bits (130), Expect = 2e-08
Identities = 26/71 (36%), Positives = 41/71 (57%)
Frame = +1
Query: 199 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 378
+ FVGGL+W T D++L+ F +G++ + D +GRSRGF F+ FK +K M
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKD----EKAMRD 62
Query: 379 GEHTINNKKVD 411
+N K++D
Sbjct: 63 AIEEMNGKELD 73
Score = 49.6 bits (113), Expect = 2e-06
Identities = 18/59 (30%), Positives = 40/59 (67%)
Frame = +1
Query: 439 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 615
+ FVGGL+ +D++++ FS+FG +++ ++ D+ + +GF F+TF+ E+ + D ++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 56.4 bits (130), Expect = 2e-08
Identities = 26/71 (36%), Positives = 41/71 (57%)
Frame = +1
Query: 199 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 378
+ FVGGL+W T D++L+ F +G++ + D +GRSRGF F+ FK +K M
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKD----EKAMRD 62
Query: 379 GEHTINNKKVD 411
+N K++D
Sbjct: 63 AIEEMNGKELD 73
Score = 49.6 bits (113), Expect = 2e-06
Identities = 18/59 (30%), Positives = 40/59 (67%)
Frame = +1
Query: 439 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 615
+ FVGGL+ +D++++ FS+FG +++ ++ D+ + +GF F+TF+ E+ + D ++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 56.4 bits (130), Expect = 2e-08
Identities = 39/142 (27%), Positives = 69/142 (48%), Gaps = 11/142 (7%)
Frame = +1
Query: 202 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 381
L+VG LS + T+K+L D F + S+++ + TG+S +A+I F +P S M
Sbjct: 23 LYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTRL 82
Query: 382 EHT-INNKKVD----------PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVE 528
H+ + K + ++ + ++V L S I+ + F FG+IL +
Sbjct: 83 NHSDLKGKAMRIMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMFCPFGSILSCK 142
Query: 529 MPFDKTKNQRKGFCFITFESEQ 594
+ + Q KGF F+ F++EQ
Sbjct: 143 VV--EENGQSKGFGFVQFDTEQ 162
Score = 47.6 bits (108), Expect = 7e-06
Identities = 46/169 (27%), Positives = 72/169 (42%), Gaps = 23/169 (13%)
Frame = +1
Query: 151 SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFA 330
++D +A A G D ++V L TD L F YG + S+ V D GRSRGF
Sbjct: 188 NKDERAAMA-GNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRD-GMGRSRGFG 245
Query: 331 FIVFKAPESIDKVMAA--GEHTINNK-------KVDPK--------------KAKARHGK 441
F+ F PE+ K M + G + K K D + K R
Sbjct: 246 FVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWSN 305
Query: 442 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 588
++V LS +++ +R F +G I+ ++ + + KGF F+ F +
Sbjct: 306 LYVKNLSESMNETRLREIFGCYGQIVSAKVMCHE-NGRSKGFGFVCFSN 353
Score = 41.1 bits (92), Expect = 6e-04
Identities = 37/139 (26%), Positives = 59/139 (42%), Gaps = 12/139 (8%)
Frame = +1
Query: 202 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA- 378
L+V L T L F +G I S V + G+S+GF F+ F +S +A
Sbjct: 114 LYVKNLDSSITSSCLERMFCPFGSILSCKVVEE--NGQSKGFGFVQFDTEQSAVSARSAL 171
Query: 379 ------GEHTINNKKVDPKKAKARHGK-----IFVGGLSSEISDDEIRNFFSEFGTILEV 525
G+ K ++ + A G ++V L ++DD + FS++GT+ V
Sbjct: 172 HGSMVYGKKLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSV 231
Query: 526 EMPFDKTKNQRKGFCFITF 582
+ D R GF F+ F
Sbjct: 232 VVMRDGMGRSR-GFGFVNF 249
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 55.6 bits (128), Expect = 3e-08
Identities = 24/60 (40%), Positives = 35/60 (58%)
Frame = +1
Query: 199 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 378
KLF+GG+++ + LR+ F YGE+ V D TGRSRGF F+ F + E+ + A
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Score = 47.6 bits (108), Expect = 7e-06
Identities = 15/59 (25%), Positives = 37/59 (62%)
Frame = +1
Query: 439 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 615
K+F+GG++ + +D +R F+++G +++ + D+ + +GF F+TF S + + ++
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQ 99
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 55.2 bits (127), Expect = 4e-08
Identities = 28/75 (37%), Positives = 40/75 (53%)
Frame = +1
Query: 199 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 378
K++VGGL W T + L + F +GEI +NV D T RS+G+ F+ FK ES +
Sbjct: 14 KIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKD 73
Query: 379 GEHTINNKKVDPKKA 423
TI + + K A
Sbjct: 74 PNPTIEGRITNCKLA 88
Score = 49.6 bits (113), Expect = 2e-06
Identities = 23/68 (33%), Positives = 37/68 (54%)
Frame = +1
Query: 439 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 618
KI+VGGL + + NFF FG I+ V + D+ ++ +G+ F+TF+ + K
Sbjct: 14 KIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKD 73
Query: 619 PKRTIGGK 642
P TI G+
Sbjct: 74 PNPTIEGR 81
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 55.2 bits (127), Expect = 4e-08
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 6/79 (7%)
Frame = +1
Query: 199 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 378
++FVGGLS E TD++L F +G+I + + +TGRSRGF FI F ++D+ +
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67
Query: 379 ------GEHTINNKKVDPK 417
G+ I+ + +PK
Sbjct: 68 MHGRDFGDRVISVNRAEPK 86
Score = 53.2 bits (122), Expect = 1e-07
Identities = 23/64 (35%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Frame = +1
Query: 427 ARHG-KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVN 603
A+ G +IFVGGLS E++D ++ FS FG IL+ ++ ++ + +GF FITF + ++
Sbjct: 3 AKEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMD 62
Query: 604 DLLK 615
+ ++
Sbjct: 63 ESIR 66
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 55.2 bits (127), Expect = 4e-08
Identities = 22/70 (31%), Positives = 45/70 (64%)
Frame = +1
Query: 439 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 618
+ FVGGL+ +D++++ FS+FG +++ ++ D+ + +GF F+TF+ E+ + D ++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 619 PKRTIGGKGG 648
+ GG GG
Sbjct: 67 MNGSGGGGGG 76
Score = 54.0 bits (124), Expect = 8e-08
Identities = 21/49 (42%), Positives = 32/49 (65%)
Frame = +1
Query: 199 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 345
+ FVGGL+W T D++L+ F +G++ + D +GRSRGF F+ FK
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFK 55
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 55.2 bits (127), Expect = 4e-08
Identities = 24/71 (33%), Positives = 41/71 (57%)
Frame = +1
Query: 199 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 378
K+FVGGL+W+T + + DHF YG+I + +D T RS+G+ F+ FK ++ +
Sbjct: 18 KVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACED 77
Query: 379 GEHTINNKKVD 411
IN ++ +
Sbjct: 78 STPIINGRRAN 88
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/68 (29%), Positives = 36/68 (52%)
Frame = +1
Query: 439 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 618
K+FVGGL+ + + + + F ++G ILE + DK + KG+ F+TF+ + +
Sbjct: 18 KVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACED 77
Query: 619 PKRTIGGK 642
I G+
Sbjct: 78 STPIINGR 85
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 55.2 bits (127), Expect = 4e-08
Identities = 44/204 (21%), Positives = 92/204 (45%), Gaps = 24/204 (11%)
Frame = +1
Query: 79 NDNFAQDITTDNQLNGNAENGGGD-SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDH 255
+D + + ++ + G + ++ + +A G ++ +L+VG L + T EL
Sbjct: 78 DDEIQASVEEEEEVEEEGDEGEEEVEEEKQTTQASG--EEGRLYVGNLPYTITSSELSQI 135
Query: 256 FGAYGEIESINVKTDPNTGRSRGFAFI----VFKAPESID-----------------KVM 372
FG G + + + D T RSRGF F+ + +A E++ +V
Sbjct: 136 FGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVP 195
Query: 373 AAGEHTINNKKV-DPKKAKA-RHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKT 546
GE+ + K+ D ++ K++ G L ++ +++ F + +L ++ +++
Sbjct: 196 RGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERN 255
Query: 547 KNQRKGFCFITFESEQVVNDLLKT 618
+ +GF FI+FES + V L T
Sbjct: 256 TGRSRGFGFISFESAENVQSALAT 279
Score = 53.6 bits (123), Expect = 1e-07
Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Frame = +1
Query: 352 ESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEM 531
E +++ GE + +K +A G+++VG L I+ E+ F E GT+++V++
Sbjct: 89 EEVEEEGDEGEEEVEEEK-QTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQI 147
Query: 532 PFDKTKNQRKGFCFITFES-EQVVNDLLKTPKRTIGGK 642
+DK ++ +GF F+T S E+ + IGG+
Sbjct: 148 VYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGR 185
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 55.2 bits (127), Expect = 4e-08
Identities = 34/159 (21%), Positives = 71/159 (44%), Gaps = 3/159 (1%)
Frame = +1
Query: 148 DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGF 327
+ + H+ + + ++FVG L ++++L+ FG GE+ + + +P T +S+G
Sbjct: 198 EEEHHDVLHERRKRKEFEIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGS 257
Query: 328 AFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEF 507
AF+ F E + + + + N K A + +FVG + + + +R +
Sbjct: 258 AFLRFATVEQAKRAVKELKSPMINGKKCGVTASQDNDTLFVGNICKIWTPEALREKLKHY 317
Query: 508 G--TILEVEMPFDKTK-NQRKGFCFITFESEQVVNDLLK 615
G + ++ + D N +G+ F+ F S D K
Sbjct: 318 GVENMDDITLVEDSNNVNMNRGYAFLEFSSRSDAMDAHK 356
Score = 44.0 bits (99), Expect = 9e-05
Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 17/169 (10%)
Frame = +1
Query: 190 DDRKLFVGGLSWETTDKELRDHFGAYG--EIESINVKTDPNT-GRSRGFAFIVFKA-PES 357
D+ LFVG + T + LR+ YG ++ I + D N +RG+AF+ F + ++
Sbjct: 292 DNDTLFVGNICKIWTPEALREKLKHYGVENMDDITLVEDSNNVNMNRGYAFLEFSSRSDA 351
Query: 358 IDK--------VMAAGEHTINNKKVDP-----KKAKARHGKIFVGGLSSEISDDEIRNFF 498
+D VM E D + A+ IF+ GL +++ +R+
Sbjct: 352 MDAHKRLVKKDVMFGVEKPAKVSFTDSFLDLEDEIMAQVKTIFIDGLLPSWNEERVRDLL 411
Query: 499 SEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKG 645
+G + +VE+ + +RK F F+TF++ + K + G+G
Sbjct: 412 KPYGKLEKVELARNMPSARRKDFGFVTFDTHEAAVSCAKFINNSELGEG 460
Score = 33.5 bits (73), Expect = 0.12
Identities = 20/79 (25%), Positives = 39/79 (49%)
Frame = +1
Query: 196 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 375
+ +F+ GL ++ +RD YG++E + + + + R + F F+ F E+ V
Sbjct: 391 KTIFIDGLLPSWNEERVRDLLKPYGKLEKVELARNMPSARRKDFGFVTFDTHEA--AVSC 448
Query: 376 AGEHTINNKKVDPKKAKAR 432
A INN ++ + KA+
Sbjct: 449 A--KFINNSELGEGEDKAK 465
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 54.8 bits (126), Expect = 5e-08
Identities = 42/169 (24%), Positives = 79/169 (46%), Gaps = 21/169 (12%)
Frame = +1
Query: 199 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM-- 372
KL+VGG+ +++T+ E+R +F + G I ++ K P G G AFI F + + +
Sbjct: 162 KLYVGGIPYQSTEDEIRSYFRSCGVIIKVDCKMRPEDGAFSGIAFITFDTEDGAKRALAF 221
Query: 373 ---AAGEH--TINN--KKVDPKKAKAR------------HGKIFVGGLSSEISDDEIRNF 495
A G+ TI K P + + + ++++G L+ + ++ +IR
Sbjct: 222 DRAAMGDRYLTIQQYVKTTTPSIPRRKTSSGFAPEMVDGYNRVYIGNLAWDTTERDIRKL 281
Query: 496 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGK 642
FS+ I V + +K + KG+ + F+ V LK ++ I G+
Sbjct: 282 FSDC-VINSVRLGKNKETGEFKGYAHVDFKDSVSVAIALKLDQQVICGR 329
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/74 (25%), Positives = 39/74 (52%)
Frame = +1
Query: 187 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 366
D ++++G L+W+TT++++R F I S+ + + TG +G+A + FK S+
Sbjct: 259 DGYNRVYIGNLAWDTTERDIRKLFSDC-VINSVRLGKNKETGEFKGYAHVDFKDSVSVAI 317
Query: 367 VMAAGEHTINNKKV 408
+ + I + V
Sbjct: 318 ALKLDQQVICGRPV 331
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 54.8 bits (126), Expect = 5e-08
Identities = 38/172 (22%), Positives = 81/172 (47%), Gaps = 21/172 (12%)
Frame = +1
Query: 148 DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGF 327
++++ +A P + R++++G + T+++L +G +E + V D +GRSR F
Sbjct: 60 ETEEKPAALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRF 119
Query: 328 AFIVFKAPESIDKVM-AAGEHTINNKKV-------------DPKKAKARHG-------KI 444
F K+ E + V+ +T+ +++ D ++ K+
Sbjct: 120 GFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKV 179
Query: 445 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVV 600
+VG L+ ++ + + N FSE G ++ ++ ++ GF F+TF SE+ V
Sbjct: 180 YVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDV 231
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Frame = +1
Query: 187 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID- 363
D K++VG L+ T + L + F G++ S V P T +S GF F+ F + E ++
Sbjct: 174 DSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEA 233
Query: 364 KVMAAGEHTINNKKVDPKKA 423
++A + +K+ KA
Sbjct: 234 AIVALNNSLLEGQKIRVNKA 253
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/80 (22%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Frame = +1
Query: 406 VDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFE 585
+DP AR ++++G + ++++++ E G + +V++ +DK + + F F T +
Sbjct: 68 LDPSSEAAR--RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMK 125
Query: 586 SEQVVNDLL-KTPKRTIGGK 642
S + N ++ K T+ G+
Sbjct: 126 SVEDANAVVEKLNGNTVEGR 145
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 54.8 bits (126), Expect = 5e-08
Identities = 24/59 (40%), Positives = 39/59 (66%)
Frame = +1
Query: 199 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 375
+LFV GLS TT+++L+D F ++G++ V TD ++GRS+GF F+ + E +K A
Sbjct: 35 RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKA 93
Score = 39.1 bits (87), Expect = 0.002
Identities = 14/48 (29%), Positives = 32/48 (66%)
Frame = +1
Query: 439 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 582
++FV GLS +++++++ F+ FG +++ + D+ + KGF F+T+
Sbjct: 35 RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTY 82
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 54.8 bits (126), Expect = 5e-08
Identities = 22/58 (37%), Positives = 36/58 (62%)
Frame = +1
Query: 187 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI 360
D++ + FVGGL+W T ++ + F +GE+ + D TGRS+GF F+ FK +S+
Sbjct: 41 DNEYRCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSM 98
Score = 43.6 bits (98), Expect = 1e-04
Identities = 18/51 (35%), Positives = 30/51 (58%)
Frame = +1
Query: 439 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESE 591
+ FVGGL+ + I F+EFG + + ++ D+ + KGF F+TF+ E
Sbjct: 45 RCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDE 95
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 54.8 bits (126), Expect = 5e-08
Identities = 25/91 (27%), Positives = 47/91 (51%)
Frame = +1
Query: 322 GFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFS 501
G I + I V+ + + ++ P + K++V GLS ++D +R+ F
Sbjct: 39 GTGVISARRRRDIGGVLISSCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFE 98
Query: 502 EFGTILEVEMPFDKTKNQRKGFCFITFESEQ 594
+FG ++ + M DK N+ KGF F+ +E+E+
Sbjct: 99 QFGNLIHMNMVMDKVANRPKGFAFLRYETEE 129
Score = 48.4 bits (110), Expect = 4e-06
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Frame = +1
Query: 199 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 378
KL+V GLS+ TT+ LRD F +G + +N+ D R +GFAF+ ++ E K +
Sbjct: 78 KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAI-Q 136
Query: 379 GEH--TINNKKVDPKKAKAR 432
G H ++ + + ++AK R
Sbjct: 137 GMHGKFLDGRVIFVEEAKTR 156
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 54.0 bits (124), Expect = 8e-08
Identities = 25/77 (32%), Positives = 43/77 (55%)
Frame = +1
Query: 199 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 378
K+FVG L+W TT +LR +F +G++ NV ++ GRS+G+ FI F+ S + +
Sbjct: 13 KIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRALQN 72
Query: 379 GEHTINNKKVDPKKAKA 429
+ I+ + + A A
Sbjct: 73 SKPIIDGRTTNCNLASA 89
Score = 44.4 bits (100), Expect = 7e-05
Identities = 21/68 (30%), Positives = 36/68 (52%)
Frame = +1
Query: 439 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 618
KIFVG L+ + D++R +F +FG +++ + + + KG+ FITF L+
Sbjct: 13 KIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRALQN 72
Query: 619 PKRTIGGK 642
K I G+
Sbjct: 73 SKPIIDGR 80
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 54.0 bits (124), Expect = 8e-08
Identities = 27/82 (32%), Positives = 46/82 (56%)
Frame = +1
Query: 163 NSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 342
+ AE PG L+V GLS T+++L DHF G++ +++ DP T SRGF FI
Sbjct: 38 SDAENPGNS----LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISM 93
Query: 343 KAPESIDKVMAAGEHTINNKKV 408
K+ ++ + + +H++ +V
Sbjct: 94 KSVGDANRCIRSLDHSVLQGRV 115
Score = 35.1 bits (77), Expect = 0.041
Identities = 14/59 (23%), Positives = 34/59 (57%)
Frame = +1
Query: 442 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 618
++V GLS +++ ++ + F++ G + +V + D + +GF FI+ +S N +++
Sbjct: 47 LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRS 105
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 52.8 bits (121), Expect = 2e-07
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Frame = +1
Query: 124 GNAENGGG------DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESI 285
G+ +GGG S S G +L+VG LSW D L + F G++
Sbjct: 219 GSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEA 278
Query: 286 NVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNKKVDPKKAKAR 432
V D ++GRS+GF F+ + + + K + + ++ +++ +A+AR
Sbjct: 279 RVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEAR 328
Score = 51.6 bits (118), Expect = 4e-07
Identities = 26/92 (28%), Positives = 40/92 (43%)
Frame = +1
Query: 88 FAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAY 267
F +++ + ++ D D E D KLFVG LS+ +L F +
Sbjct: 63 FVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESA 122
Query: 268 GEIESINVKTDPNTGRSRGFAFIVFKAPESID 363
G +E + V D TGRSRGF F+ ++
Sbjct: 123 GNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVE 154
Score = 46.0 bits (104), Expect = 2e-05
Identities = 19/60 (31%), Positives = 34/60 (56%)
Frame = +1
Query: 439 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 618
+++VG LS + D + N F+E G ++E + +D+ + KGF F+T S Q V + +
Sbjct: 250 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 309
Score = 39.1 bits (87), Expect = 0.002
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +1
Query: 439 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 588
K+FVG LS + ++ F G + VE+ +DK + +GF F+T +
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMST 149
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 52.8 bits (121), Expect = 2e-07
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Frame = +1
Query: 124 GNAENGGG------DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESI 285
G+ +GGG S S G +L+VG LSW D L + F G++
Sbjct: 227 GSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEA 286
Query: 286 NVKTDPNTGRSRGFAFIVFKAPESIDK-VMAAGEHTINNKKVDPKKAKAR 432
V D ++GRS+GF F+ + + + K + + ++ +++ +A+AR
Sbjct: 287 RVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEAR 336
Score = 51.6 bits (118), Expect = 4e-07
Identities = 26/92 (28%), Positives = 40/92 (43%)
Frame = +1
Query: 88 FAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAY 267
F +++ + ++ D D E D KLFVG LS+ +L F +
Sbjct: 63 FVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESA 122
Query: 268 GEIESINVKTDPNTGRSRGFAFIVFKAPESID 363
G +E + V D TGRSRGF F+ ++
Sbjct: 123 GNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVE 154
Score = 46.0 bits (104), Expect = 2e-05
Identities = 19/60 (31%), Positives = 34/60 (56%)
Frame = +1
Query: 439 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 618
+++VG LS + D + N F+E G ++E + +D+ + KGF F+T S Q V + +
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Score = 39.1 bits (87), Expect = 0.002
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +1
Query: 439 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 588
K+FVG LS + ++ F G + VE+ +DK + +GF F+T +
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMST 149
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 52.8 bits (121), Expect = 2e-07
Identities = 25/63 (39%), Positives = 35/63 (55%)
Frame = +1
Query: 187 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 366
+ K++VG L W T LR+HF +G I S V D TGR+R FAF+ F + E D
Sbjct: 209 ESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDA 268
Query: 367 VMA 375
++
Sbjct: 269 ALS 271
Score = 49.2 bits (112), Expect = 2e-06
Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 25/141 (17%)
Frame = +1
Query: 241 ELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK-------APESIDKVMAAGEH---- 387
+L D F +G + S+ V +P TG SRG ++ A S+D G
Sbjct: 123 QLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVR 182
Query: 388 --------TINNKKV---DPKKA---KARHGKIFVGGLSSEISDDEIRNFFSEFGTILEV 525
T N +V PKK +++H K++VG L D +RN FS+FGTI+
Sbjct: 183 YSVDMNPGTRRNPEVLNSTPKKILMYESQH-KVYVGNLPWFTQPDGLRNHFSKFGTIVST 241
Query: 526 EMPFDKTKNQRKGFCFITFES 588
+ D+ + + F F++F S
Sbjct: 242 RVLHDRKTGRNRVFAFLSFTS 262
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 52.4 bits (120), Expect = 2e-07
Identities = 25/70 (35%), Positives = 44/70 (62%)
Frame = +1
Query: 148 DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGF 327
DS+D + +E+P +KLF+ GLS+ T++K LR F +GE+ + + D + RS+G+
Sbjct: 267 DSRDQDDSESPPVKT-KKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGY 325
Query: 328 AFIVFKAPES 357
AF+ + E+
Sbjct: 326 AFLEYTTEEA 335
Score = 48.0 bits (109), Expect = 5e-06
Identities = 24/88 (27%), Positives = 44/88 (50%)
Frame = +1
Query: 352 ESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEM 531
ES++K + + D + + K+F+ GLS S+ +R F FG ++EV++
Sbjct: 254 ESLNKDYEGDSTQDSRDQDDSESPPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKI 313
Query: 532 PFDKTKNQRKGFCFITFESEQVVNDLLK 615
DK + KG+ F+ + +E+ LK
Sbjct: 314 IMDKISKRSKGYAFLEYTTEEAAGTALK 341
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 52.4 bits (120), Expect = 2e-07
Identities = 41/157 (26%), Positives = 75/157 (47%), Gaps = 8/157 (5%)
Frame = +1
Query: 142 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSR 321
G + +SAE R+ D ++VGGL + +++ L + F G + ++ V D T +
Sbjct: 10 GANLLGQHSAE---RNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQ 66
Query: 322 GFAFIVFKAPESID---KVMAA----GEHTINNKKVDPKKAKARHGKIFVGGLSSEISDD 480
+ FI +++ E D KV+ G+ NK KK+ +F+G L ++ +
Sbjct: 67 NYGFIEYRSEEDADYAIKVLNMIKLHGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEK 126
Query: 481 EIRNFFSEFGTIL-EVEMPFDKTKNQRKGFCFITFES 588
+ + FS FG I ++ D +GF FI+++S
Sbjct: 127 LLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDS 163
Score = 47.2 bits (107), Expect = 9e-06
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Frame = +1
Query: 166 SAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESI-NVKTDPNTGRSRGFAFIVF 342
S + D LF+G L + +K L D F A+G I S + DP+TG SRGF FI +
Sbjct: 102 SQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISY 161
Query: 343 KAPESIDKVMAA--GEHTINNK 402
+ E+ D + + G++ N +
Sbjct: 162 DSFEASDAAIESMTGQYLSNRQ 183
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 52.0 bits (119), Expect = 3e-07
Identities = 26/101 (25%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
Frame = +1
Query: 115 QLNGNAENGGGDSQDHN---SAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESI 285
++ AE G SQD + SA D R ++VG + + T +E++ HF + G + +
Sbjct: 73 EMQAKAEKDMGASQDPSGGVSAAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRV 132
Query: 286 NVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 408
+ TD G+ +GFA++ F E++ + E ++ +++
Sbjct: 133 TILTD-KFGQPKGFAYVEFVEVEAVQNSLILNESELHGRQI 172
Score = 35.5 bits (78), Expect = 0.031
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +1
Query: 415 KKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF-ESE 591
+K + I+VG + + +E++ F GT+ V + DK Q KGF ++ F E E
Sbjct: 96 EKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEVE 154
Query: 592 QVVNDLL 612
V N L+
Sbjct: 155 AVQNSLI 161
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 52.0 bits (119), Expect = 3e-07
Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 22/164 (13%)
Frame = +1
Query: 169 AEAPGRDDDR-KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 345
AE +++R KLFVG + T+ +L F + + +N+ + T RG F+
Sbjct: 2 AEETMENEERVKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCP 61
Query: 346 APESIDKVMAAGEHTINNKKV-----DPKKAKARHG----------------KIFVGGLS 462
E DKV+ ++ +NKK P + K G K+FVG L
Sbjct: 62 TREDADKVI----NSFHNKKTLPGASSPLQVKYADGELERLDVLDCSCNPEHKLFVGMLP 117
Query: 463 SEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 594
+S+ E+++ FSE+GTI ++++ + KG F+ +ES++
Sbjct: 118 KNVSETEVQSLFSEYGTIKDLQI-LRGSLQTSKGCLFLKYESKE 160
Score = 37.5 bits (83), Expect = 0.008
Identities = 18/69 (26%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Frame = +1
Query: 439 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 618
K+FVG + +++ ++ F EF + EV + +KT +G CF+T + + + ++ +
Sbjct: 13 KLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVINS 72
Query: 619 --PKRTIGG 639
K+T+ G
Sbjct: 73 FHNKKTLPG 81
Score = 34.7 bits (76), Expect = 0.054
Identities = 22/77 (28%), Positives = 38/77 (49%)
Frame = +1
Query: 202 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 381
LF+ + E D+EL F +G++ S V D TG S+ F FI + + + +
Sbjct: 341 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAI--- 397
Query: 382 EHTINNKKVDPKKAKAR 432
+T+N ++ KK K +
Sbjct: 398 -NTMNGCQLSGKKLKVQ 413
Score = 32.3 bits (70), Expect = 0.29
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = +1
Query: 193 DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 372
+ KLFVG L ++ E++ F YG I+ + + + S+G F+ +++ E M
Sbjct: 108 EHKLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRG-SLQTSKGCLFLKYESKEQAVAAM 166
Query: 373 AA--GEHTINNKKV 408
A G H + V
Sbjct: 167 EALNGRHIMEGANV 180
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 51.6 bits (118), Expect = 4e-07
Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 20/168 (11%)
Frame = +1
Query: 196 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 375
+ LF G LS++ ++ + F GE+ + + + + G +G+ I F +PE K +
Sbjct: 384 KTLFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFDD-GSFKGYGHIEFASPEEAQKALE 442
Query: 376 AGEHTI---------NNKKVDPKKAK-ARHGK------IFVGGLSSEISDDEI----RNF 495
+ N++ P+ + R G+ I+V G SS + +DEI R+
Sbjct: 443 MNGKLLLGRDVRLDLANERGTPRNSNPGRKGEGSQSRTIYVRGFSSSLGEDEIKKELRSH 502
Query: 496 FSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGG 639
FS+ G + V +P D+ +GF +I S ++ L+ IGG
Sbjct: 503 FSKCGEVTRVHVPTDRETGASRGFAYIDLTSG--FDEALQLSGSEIGG 548
Score = 46.4 bits (105), Expect = 2e-05
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Frame = +1
Query: 136 NGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTD----KELRDHFGAYGEIESINVKTDP 303
N G ++ N R ++V G S + KELR HF GE+ ++V TD
Sbjct: 459 NERGTPRNSNPGRKGEGSQSRTIYVRGFSSSLGEDEIKKELRSHFSKCGEVTRVHVPTDR 518
Query: 304 NTGRSRGFAFI 336
TG SRGFA+I
Sbjct: 519 ETGASRGFAYI 529
Score = 37.9 bits (84), Expect = 0.006
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 1/101 (0%)
Frame = +1
Query: 343 KAPESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILE 522
K ++ V A + K + + +F G LS +I+ +I NFF E G +++
Sbjct: 353 KKDSDVEMVDAEQKSNAKQPKTPTNQTQGGSKTLFAGNLSYQIARSDIENFFKEAGEVVD 412
Query: 523 VEM-PFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGK 642
V + FD KG+ I F S + L+ + + G+
Sbjct: 413 VRLSSFD--DGSFKGYGHIEFASPEEAQKALEMNGKLLLGR 451
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 51.2 bits (117), Expect = 6e-07
Identities = 38/149 (25%), Positives = 72/149 (48%), Gaps = 10/149 (6%)
Frame = +1
Query: 178 PGRDDD--RKLFVGGLSWETTDKELRDHFGAYGEIESIN-VKTDPNTGRSRGFAFIVFKA 348
PG D R ++VG + + T+ L++ F + G +ES ++ D + S GF +
Sbjct: 51 PGFDPSTCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKS---SYGFVHYFDRR 107
Query: 349 PESIDKVMAAGEHTINNK-KVD------PKKAKARHGKIFVGGLSSEISDDEIRNFFSEF 507
++ + G H KV+ ++ + H IFVG LS E++D + FS F
Sbjct: 108 SAALAILSLNGRHLFGQPIKVNWAYATGQREDTSSHFNIFVGDLSPEVTDATLYQSFSVF 167
Query: 508 GTILEVEMPFDKTKNQRKGFCFITFESEQ 594
+ + + +D+ + +GF F++F ++Q
Sbjct: 168 SSCSDARVMWDQKTGRSRGFGFVSFRNQQ 196
Score = 46.0 bits (104), Expect = 2e-05
Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Frame = +1
Query: 163 NSAEAPGRDDDRK----LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFA 330
N A A G+ +D +FVG LS E TD L F + V D TGRSRGF
Sbjct: 129 NWAYATGQREDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFG 188
Query: 331 FIVFK 345
F+ F+
Sbjct: 189 FVSFR 193
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 51.2 bits (117), Expect = 6e-07
Identities = 38/166 (22%), Positives = 73/166 (43%), Gaps = 23/166 (13%)
Frame = +1
Query: 154 QDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAF 333
+D EA D R +F ++ T++++ + F G++ + + D + RSRG +
Sbjct: 168 EDKVEPEADPERDQRTVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGY 227
Query: 334 IVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHG-----------------------KI 444
+ F S+ +A + + V K ++A ++
Sbjct: 228 VEFYDTMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRL 287
Query: 445 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 582
+VG L +S+D++R F FG++ V++P D+T KGF F+ F
Sbjct: 288 YVGNLHINMSEDDLRKVFESFGSVELVQVPRDET-GLCKGFGFVQF 332
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 51.2 bits (117), Expect = 6e-07
Identities = 23/72 (31%), Positives = 40/72 (55%)
Frame = +1
Query: 163 NSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 342
+S G + ++FVGGL + T+ ++R+ ++G + N+ D TG S+G+AF V+
Sbjct: 364 SSGSTGGLEGPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVY 423
Query: 343 KAPESIDKVMAA 378
+ P D AA
Sbjct: 424 QDPSVTDIACAA 435
Score = 34.7 bits (76), Expect = 0.054
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +1
Query: 439 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVN 603
+IFVGGL ++ +IR FG + + D+ KG+ F ++ V +
Sbjct: 376 RIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTD 430
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 51.2 bits (117), Expect = 6e-07
Identities = 41/148 (27%), Positives = 70/148 (47%), Gaps = 28/148 (18%)
Frame = +1
Query: 184 RDD--DRKLFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVFKAPE 354
RDD D +FVG L+ + TD L + F A Y ++ V D TGR++G+ F+ F
Sbjct: 149 RDDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDES 208
Query: 355 SIDKVM-----------------AAGEHTINNKKVDPKKAKA--------RHGKIFVGGL 459
+ M AA + + ++ + + A + +FVGGL
Sbjct: 209 EQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGL 268
Query: 460 SSEISDDEIRNFFSEFGTILEVEMPFDK 543
+ ++DD ++N FS++G I+ V++P K
Sbjct: 269 DASVTDDHLKNVFSQYGEIVHVKIPAGK 296
Score = 43.6 bits (98), Expect = 1e-04
Identities = 37/160 (23%), Positives = 74/160 (46%), Gaps = 16/160 (10%)
Frame = +1
Query: 166 SAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 345
S + D+ R L++G L + + L F GE+ S V + TG+ G+ FI F
Sbjct: 52 SVQPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFA 111
Query: 346 APESIDKVMAAGEHT-----------IN--NKKVDPKKAKARHGKIFVGGLSSEISD-DE 483
+ + ++V+ + +N + K+ + IFVG L+++++D
Sbjct: 112 SHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYIL 171
Query: 484 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF--ESEQV 597
+ F + + ++ ++ D+ + KG+ F+ F ESEQ+
Sbjct: 172 LETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQI 211
Score = 33.1 bits (72), Expect = 0.16
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +1
Query: 139 GGGDSQDHNSAEAPGRDDDRK--LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 312
G DS ++A +D +FVGGL TD L++ F YGEI + + G
Sbjct: 240 GQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCG 299
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 51.2 bits (117), Expect = 6e-07
Identities = 41/148 (27%), Positives = 70/148 (47%), Gaps = 28/148 (18%)
Frame = +1
Query: 184 RDD--DRKLFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVFKAPE 354
RDD D +FVG L+ + TD L + F A Y ++ V D TGR++G+ F+ F
Sbjct: 149 RDDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDES 208
Query: 355 SIDKVM-----------------AAGEHTINNKKVDPKKAKA--------RHGKIFVGGL 459
+ M AA + + ++ + + A + +FVGGL
Sbjct: 209 EQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGL 268
Query: 460 SSEISDDEIRNFFSEFGTILEVEMPFDK 543
+ ++DD ++N FS++G I+ V++P K
Sbjct: 269 DASVTDDHLKNVFSQYGEIVHVKIPAGK 296
Score = 43.6 bits (98), Expect = 1e-04
Identities = 37/160 (23%), Positives = 74/160 (46%), Gaps = 16/160 (10%)
Frame = +1
Query: 166 SAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 345
S + D+ R L++G L + + L F GE+ S V + TG+ G+ FI F
Sbjct: 52 SVQPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFA 111
Query: 346 APESIDKVMAAGEHT-----------IN--NKKVDPKKAKARHGKIFVGGLSSEISD-DE 483
+ + ++V+ + +N + K+ + IFVG L+++++D
Sbjct: 112 SHAAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYIL 171
Query: 484 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF--ESEQV 597
+ F + + ++ ++ D+ + KG+ F+ F ESEQ+
Sbjct: 172 LETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQI 211
Score = 33.1 bits (72), Expect = 0.16
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +1
Query: 139 GGGDSQDHNSAEAPGRDDDRK--LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 312
G DS ++A +D +FVGGL TD L++ F YGEI + + G
Sbjct: 240 GQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCG 299
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 50.4 bits (115), Expect = 1e-06
Identities = 37/161 (22%), Positives = 71/161 (44%), Gaps = 15/161 (9%)
Frame = +1
Query: 154 QDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAF 333
Q H + + DD + L+VG L + L F GE+ S+ V + T +S G+ F
Sbjct: 94 QQHKAIDRGSGDDVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGF 153
Query: 334 IVFKAPESIDKVMAAGEHTINNKKVDP-----------KKAKARHG---KIFVGGLSSEI 471
+ F + + ++V+ ++ P +K +G +FVG LS ++
Sbjct: 154 VEFLSRAAAEEVLQNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDV 213
Query: 472 SDDEIRNFFSE-FGTILEVEMPFDKTKNQRKGFCFITFESE 591
+D + FS+ + ++ ++ D + KG+ F+ F E
Sbjct: 214 TDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDE 254
Score = 45.2 bits (102), Expect = 4e-05
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Frame = +1
Query: 355 SIDKVMAAGEHTINNKKV--DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVE 528
S V+ AG H N ++ + IFVGG+ ++ D+++R FS+FG ++ V+
Sbjct: 292 SSQAVILAGGHGSNGSMGYGSQSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVK 351
Query: 529 MPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGK 642
+P KG F+ F + D +++ T+ GK
Sbjct: 352 IPVG------KGCGFVQFADRKSAEDAIESLNGTVIGK 383
Score = 36.7 bits (81), Expect = 0.013
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +1
Query: 136 NGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 312
+G S + S ++ G + +FVGG+ + D++LR F +GE+ S+ + G
Sbjct: 302 HGSNGSMGYGS-QSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCG 359
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 50.4 bits (115), Expect = 1e-06
Identities = 39/149 (26%), Positives = 72/149 (48%), Gaps = 10/149 (6%)
Frame = +1
Query: 178 PGRDDD--RKLFVGGLSWETTDKELRDHFGAYGEIESIN-VKTDPNTGRSRGFAFIVFKA 348
PG D R ++ G + + T+ L++ F + G IES ++ D + S GF +
Sbjct: 55 PGFDPTTCRSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKS---SYGFVHYFDRR 111
Query: 349 PESIDKVMAAGEHTINNK-KVD------PKKAKARHGKIFVGGLSSEISDDEIRNFFSEF 507
S+ + G H KV+ ++ + H IFVG LS E++D + + FS F
Sbjct: 112 CASMAIMTLNGRHIFGQPMKVNWAYATGQREDTSSHFNIFVGDLSPEVTDAALFDSFSAF 171
Query: 508 GTILEVEMPFDKTKNQRKGFCFITFESEQ 594
+ + + +D+ + +GF F++F ++Q
Sbjct: 172 NSCSDARVMWDQKTGRSRGFGFVSFRNQQ 200
Score = 50.0 bits (114), Expect = 1e-06
Identities = 29/71 (40%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Frame = +1
Query: 145 GDSQDHNSAEAPGRDDDRK----LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 312
G N A A G+ +D +FVG LS E TD L D F A+ V D TG
Sbjct: 127 GQPMKVNWAYATGQREDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTG 186
Query: 313 RSRGFAFIVFK 345
RSRGF F+ F+
Sbjct: 187 RSRGFGFVSFR 197
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 50.0 bits (114), Expect = 1e-06
Identities = 21/62 (33%), Positives = 34/62 (54%)
Frame = +1
Query: 187 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 366
+ + KLFVG LSW T + L F G++ V D +TGRSRG+ F+ + + ++
Sbjct: 174 ETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMET 233
Query: 367 VM 372
+
Sbjct: 234 AL 235
Score = 49.6 bits (113), Expect = 2e-06
Identities = 37/152 (24%), Positives = 64/152 (42%), Gaps = 12/152 (7%)
Frame = +1
Query: 199 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE-------S 357
KL+ G L + L + E + V + +TG+SRGFAF+ E +
Sbjct: 86 KLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDN 145
Query: 358 IDKVMAAGEHTINNKKVDPKKAK-----ARHGKIFVGGLSSEISDDEIRNFFSEFGTILE 522
+D G N PK K K+FVG LS ++ + + F E G ++
Sbjct: 146 LDGTEYLGRALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGDVVG 205
Query: 523 VEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 618
+ FD + +G+ F+ + S+ + L++
Sbjct: 206 ARVVFDGDTGRSRGYGFVCYSSKAEMETALES 237
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/60 (36%), Positives = 37/60 (61%)
Frame = +1
Query: 199 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 378
KL++GGLS T + L+D F ++ + V T+ TGRSRG+ F+ F + +S + ++A
Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/58 (27%), Positives = 31/58 (53%)
Frame = +1
Query: 439 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 612
K+++GGLS + +++ FS F + E + +K + +G+ F+ F SE N +
Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAI 89
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 49.6 bits (113), Expect = 2e-06
Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 24/161 (14%)
Frame = +1
Query: 202 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK-APESIDKVMAA 378
++V L+ TTD +L++ FG YG+I S V D G+S+GF F+ F+ A ++ V +
Sbjct: 31 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKD-GEGKSKGFGFVNFENADDAARAVESL 89
Query: 379 GEHTINNK---------------------KVDPKKA--KARHGKIFVGGLSSEISDDEIR 489
H ++K + + K+A K + ++V L ISD++++
Sbjct: 90 NGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLK 149
Query: 490 NFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 612
FS FGT+ ++ D KG F+ F + + + +
Sbjct: 150 EIFSPFGTVTSSKVMRD-PNGTSKGSGFVAFATPEEATEAM 189
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/73 (31%), Positives = 37/73 (50%)
Frame = +1
Query: 157 DHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFI 336
+ N EA + L+V L +D++L++ F +G + S V DPN G S+G F+
Sbjct: 119 EQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPN-GTSKGSGFV 177
Query: 337 VFKAPESIDKVMA 375
F PE + M+
Sbjct: 178 AFATPEEATEAMS 190
Score = 39.1 bits (87), Expect = 0.002
Identities = 21/76 (27%), Positives = 39/76 (51%)
Frame = +1
Query: 361 DKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFD 540
DK + G + ++ D K + ++V L+ +DD+++N F E+G I + D
Sbjct: 5 DKQVYVGPF-LRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKD 63
Query: 541 KTKNQRKGFCFITFES 588
+ + KGF F+ FE+
Sbjct: 64 -GEGKSKGFGFVNFEN 78
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 49.6 bits (113), Expect = 2e-06
Identities = 27/71 (38%), Positives = 42/71 (59%)
Frame = +1
Query: 199 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 378
K+FVGGLS T + L++ FG++G+I V D +G SRGF F+ + + E + M A
Sbjct: 37 KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQA 96
Query: 379 GEHTINNKKVD 411
+ NK++D
Sbjct: 97 ----MQNKELD 103
Score = 46.8 bits (106), Expect = 1e-05
Identities = 20/59 (33%), Positives = 35/59 (59%)
Frame = +1
Query: 439 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 615
KIFVGGLS + ++ F FG I++ + D+ +GF F+T++S +V N+ ++
Sbjct: 37 KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQ 95
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 49.6 bits (113), Expect = 2e-06
Identities = 37/148 (25%), Positives = 68/148 (45%), Gaps = 9/148 (6%)
Frame = +1
Query: 178 PGRDDD--RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 351
PG D R ++VG + + T+ L++ F G +ES + + S GF +
Sbjct: 46 PGFDPSTCRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKS--SYGFVHYFDRRS 103
Query: 352 ESIDKVMAAGEHTINNK-KVD------PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFG 510
+ + G H KV+ ++ + H IFVG LS E++D + FS +
Sbjct: 104 AGLAILSLNGRHLFGQPIKVNWAYASGQREDTSSHFNIFVGDLSPEVTDAMLFTCFSVYP 163
Query: 511 TILEVEMPFDKTKNQRKGFCFITFESEQ 594
T + + +D+ + +GF F++F ++Q
Sbjct: 164 TCSDARVMWDQKTGRSRGFGFVSFRNQQ 191
Score = 44.4 bits (100), Expect = 7e-05
Identities = 27/65 (41%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Frame = +1
Query: 163 NSAEAPGRDDDRK----LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFA 330
N A A G+ +D +FVG LS E TD L F Y V D TGRSRGF
Sbjct: 124 NWAYASGQREDTSSHFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFG 183
Query: 331 FIVFK 345
F+ F+
Sbjct: 184 FVSFR 188
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +1
Query: 148 DSQDHNSAEAPGRDDD-RKLFVGGLSWETTDKELRDHFGAYGE--IESINVKTDPNTG 312
D +D + EAP + ++VG L+ E + +L HF + G IE + V+ D G
Sbjct: 243 DGKDTTNGEAPENNAQYTTVYVGNLAPEVSQVDLHRHFHSLGAGVIEEVRVQRDKGFG 300
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 49.2 bits (112), Expect = 2e-06
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = +1
Query: 199 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK-VMA 375
KLF+GGLS+ TT++ L + F G++ + D + RS+GF F+ F + + K +M
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94
Query: 376 AGEHTINNKKVDPKKAKAR 432
+N + + AKA+
Sbjct: 95 FNGQQLNGRTIFVDYAKAK 113
Score = 44.0 bits (99), Expect = 9e-05
Identities = 18/50 (36%), Positives = 32/50 (64%)
Frame = +1
Query: 439 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 588
K+F+GGLS ++ + FS+ G ++E ++ D+ ++ KGF F+TF S
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFAS 84
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 49.2 bits (112), Expect = 2e-06
Identities = 26/66 (39%), Positives = 35/66 (53%)
Frame = +1
Query: 421 AKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVV 600
AK ++FV LS+ +D +R FS FG I E + D + KGF FITF+SE
Sbjct: 2 AKRISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDA 61
Query: 601 NDLLKT 618
LK+
Sbjct: 62 RKALKS 67
Score = 45.6 bits (103), Expect = 3e-05
Identities = 22/58 (37%), Positives = 32/58 (55%)
Frame = +1
Query: 199 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 372
+LFV LS TTD+ LR F +G+I+ + D T R +GF FI F + + K +
Sbjct: 8 QLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL 65
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 48.8 bits (111), Expect = 3e-06
Identities = 20/52 (38%), Positives = 34/52 (65%)
Frame = +1
Query: 202 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 357
++VGG+ ++ T+ +L F YGEI +N+ D TG+S+GFAF+ ++ S
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRS 89
Score = 43.2 bits (97), Expect = 2e-04
Identities = 15/51 (29%), Positives = 34/51 (66%)
Frame = +1
Query: 442 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 594
++VGG+ ++++ ++ FS++G I++V + DK + KGF F+ +E ++
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQR 88
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 48.4 bits (110), Expect = 4e-06
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +1
Query: 193 DRKLFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 369
D +FVG L+ + TD L++ F Y + V TDP+TGRS+G+ F+ F ++
Sbjct: 115 DHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRA 174
Query: 370 MA 375
MA
Sbjct: 175 MA 176
Score = 39.5 bits (88), Expect = 0.002
Identities = 38/156 (24%), Positives = 70/156 (44%), Gaps = 17/156 (10%)
Frame = +1
Query: 187 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 366
++ R L++G L + + L F GE+ S+ V + TG+ G+ FI F + + ++
Sbjct: 21 EEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAER 80
Query: 367 V--------MAAGEHTI--------NNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFF 498
M E T + +KVD A H IFVG L+ +++D ++ F
Sbjct: 81 TLQTYNGTQMPGTELTFRLNWASFGSGQKVD---AGPDH-SIFVGDLAPDVTDYLLQETF 136
Query: 499 S-EFGTILEVEMPFDKTKNQRKGFCFITFESEQVVN 603
+ ++ ++ D + + KG+ F+ F E N
Sbjct: 137 RVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERN 172
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 48.4 bits (110), Expect = 4e-06
Identities = 38/163 (23%), Positives = 64/163 (39%), Gaps = 28/163 (17%)
Frame = +1
Query: 178 PGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 357
P + LF LS+ ++ + F GE+ + T+ + G RGF + F + E
Sbjct: 291 PAAGGSKTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEE 350
Query: 358 IDKVMAAGEHTINNKKV-----------------DPKKAKARHG-------KIFVGGLSS 465
K + + +++ P+ R G KIFV G +
Sbjct: 351 AQKALEFHGRPLLGREIRLDIAQERGERGERPAFTPQSGNFRSGGDGGDEKKIFVKGFDA 410
Query: 466 EISDDEIRN----FFSEFGTILEVEMPFDKTKNQRKGFCFITF 582
+S+D+I+N FS G I V +P D+ KG ++ F
Sbjct: 411 SLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEF 453
Score = 37.1 bits (82), Expect = 0.010
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 1/98 (1%)
Frame = +1
Query: 352 ESIDKVMAAGEHTINNKKVDPKKAKARHGK-IFVGGLSSEISDDEIRNFFSEFGTILEVE 528
+S D M E + + P A K +F LS I ++ NFF E G +++V
Sbjct: 268 KSSDVEMVDAEKSSAKQPKTPSTPAAGGSKTLFAANLSFNIERADVENFFKEAGEVVDVR 327
Query: 529 MPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGK 642
++ +GF + F S + L+ R + G+
Sbjct: 328 FSTNRDDGSFRGFGHVEFASSEEAQKALEFHGRPLLGR 365
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 48.4 bits (110), Expect = 4e-06
Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 17/151 (11%)
Frame = +1
Query: 190 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKT--DPNTGRSRGFAFIVFKAPESID 363
+++ ++VG L + L F + E E ++VK + N G S G+ F+ F++ + D
Sbjct: 99 ENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVAD 158
Query: 364 KVMAAGEHTINNKKVDP-----------KKAKARHG---KIFVGGLSSEISDDEIRNFFS 501
KV+ T P +K +G IFVG LS ++SD+ + FS
Sbjct: 159 KVLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFS 218
Query: 502 E-FGTILEVEMPFDKTKNQRKGFCFITFESE 591
E + ++ ++ D + KG+ F+ F E
Sbjct: 219 EKYPSVKAAKVVLDANTGRSKGYGFVRFGDE 249
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 193 DRKLFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 369
D +FVG LS + +D L + F Y +++ V D NTGRS+G+ F+ F K
Sbjct: 196 DLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKA 255
Query: 370 M 372
M
Sbjct: 256 M 256
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 48.4 bits (110), Expect = 4e-06
Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 17/151 (11%)
Frame = +1
Query: 190 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKT--DPNTGRSRGFAFIVFKAPESID 363
+++ ++VG L + L F + E E ++VK + N G S G+ F+ F++ + D
Sbjct: 99 ENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVAD 158
Query: 364 KVMAAGEHTINNKKVDP-----------KKAKARHG---KIFVGGLSSEISDDEIRNFFS 501
KV+ T P +K +G IFVG LS ++SD+ + FS
Sbjct: 159 KVLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFS 218
Query: 502 E-FGTILEVEMPFDKTKNQRKGFCFITFESE 591
E + ++ ++ D + KG+ F+ F E
Sbjct: 219 EKYPSVKAAKVVLDANTGRSKGYGFVRFGDE 249
Score = 46.8 bits (106), Expect = 1e-05
Identities = 47/177 (26%), Positives = 76/177 (42%), Gaps = 27/177 (15%)
Frame = +1
Query: 193 DRKLFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSR--GF-----------A 330
D +FVG LS + +D L + F Y +++ V D NTGRS+ GF A
Sbjct: 196 DLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKA 255
Query: 331 FIVFKAPESIDKVMAAGEHT-------------INNKKVDPKKAKARHGKIFVGGLSSEI 471
+ + M G T + N + + + IFVGGL S +
Sbjct: 256 MTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSV 315
Query: 472 SDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGK 642
+D++++ F+EFG I+ V++P KG F+ F + + L+ T+ GK
Sbjct: 316 TDEDLKQPFNEFGEIVSVKIPVG------KGCGFVQFVNRPNAEEALEKLNGTVIGK 366
Score = 37.5 bits (83), Expect = 0.008
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Frame = +1
Query: 106 TDNQLNGNAENGGGDSQDHNSAEAPGRDD-DRKLFVGGLSWETTDKELRDHFGAYGEIES 282
T + NG + GG + + P D + +FVGGL TD++L+ F +GEI S
Sbjct: 275 TPRKTNGYQQQGG--YMPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVS 332
Query: 283 INVKTDPNTGRSRGFAFIVFK--APESIDKV 369
+ + G+ GF V + A E+++K+
Sbjct: 333 VKIP----VGKGCGFVQFVNRPNAEEALEKL 359
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 48.0 bits (109), Expect = 5e-06
Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 25/154 (16%)
Frame = +1
Query: 157 DHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAF 333
+ AE P + +FVG L+ + TD L + F A Y ++ V D TGRS+G+ F
Sbjct: 164 ERRQAEGP----EHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGF 219
Query: 334 IVFKAPESIDKVMAA--GEHTIN---------NKK---VDPKKAKARHGK---------- 441
+ F + M G++ + NKK + P + G
Sbjct: 220 VRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTT 279
Query: 442 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDK 543
IFVG + +++D++++ F +FG ++ V++P K
Sbjct: 280 IFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGK 313
Score = 46.4 bits (105), Expect = 2e-05
Identities = 43/169 (25%), Positives = 79/169 (46%), Gaps = 16/169 (9%)
Frame = +1
Query: 139 GGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRS 318
GGG SQ+ SA + R L++G L + L + FG GE + V + G S
Sbjct: 66 GGGGSQNPGSA-----GEIRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYS 120
Query: 319 RGFAFIVFKAPESIDK--------VMAAGEHT--INNKKV---DPKKAKARHGKIFVGGL 459
G+ FI F + ++ M + E +N ++ + ++A+ +FVG L
Sbjct: 121 EGYGFIEFVNHATAERNLQTYNGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDL 180
Query: 460 SSEISDDEIRNFFSE-FGTILEVEMPFDKTKNQRKGFCFITF--ESEQV 597
+ +++D + F + ++ ++ D+T + KG+ F+ F ESEQ+
Sbjct: 181 APDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQI 229
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +1
Query: 202 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 312
+FVG + T+ +L+ FG +GE+ + + G
Sbjct: 280 IFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCG 316
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 48.0 bits (109), Expect = 5e-06
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Frame = +1
Query: 199 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 378
+++VG LS TTD LR+ F YG + V D T RSRGF F+ + + + ++
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 379 GE-HTINNKKVDPK 417
+ +N ++V K
Sbjct: 64 MDGKELNGRRVSVK 77
Score = 41.5 bits (93), Expect = 5e-04
Identities = 16/50 (32%), Positives = 32/50 (64%)
Frame = +1
Query: 439 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 588
+++VG LS +DD +R FS +G +++ + D+ ++ +GF F+T+ S
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSS 53
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 47.6 bits (108), Expect = 7e-06
Identities = 25/66 (37%), Positives = 34/66 (51%)
Frame = +1
Query: 178 PGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 357
P + LFV GLS TT + LR F +GE+ V TD +G S+GF F+ + E
Sbjct: 50 PQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLED 109
Query: 358 IDKVMA 375
K +A
Sbjct: 110 SAKGIA 115
Score = 37.9 bits (84), Expect = 0.006
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +1
Query: 442 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 582
+FV GLS + + +R F++FG + + ++ D+ KGF F+ +
Sbjct: 58 LFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRY 104
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 47.6 bits (108), Expect = 7e-06
Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Frame = +1
Query: 115 QLNGNAENGGGDSQDHNS--AEAPGRD--DDRKLFVGGLSWETTDKELRDHFGAYGEIES 282
++ E G +QD S A G++ D R ++VG + + T +E++ HF G +
Sbjct: 58 EMQAKVEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNR 117
Query: 283 INVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNK--KVDPKK 420
+ + D G+ +GFA++ F E++ + + E ++ + KV PK+
Sbjct: 118 VTILMD-KFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKR 164
Score = 36.3 bits (80), Expect = 0.018
Identities = 21/95 (22%), Positives = 43/95 (45%)
Frame = +1
Query: 358 IDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPF 537
++K M A + + K + ++VG + + +E++ F GT+ V +
Sbjct: 63 VEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILM 122
Query: 538 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGK 642
DK Q KGF ++ F + V + L+ + + G+
Sbjct: 123 DKF-GQPKGFAYVEFVEVEAVQEALQLNESELHGR 156
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 47.6 bits (108), Expect = 7e-06
Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Frame = +1
Query: 115 QLNGNAENGGGDSQDHNS--AEAPGRD--DDRKLFVGGLSWETTDKELRDHFGAYGEIES 282
++ E G +QD S A G++ D R ++VG + + T +E++ HF G +
Sbjct: 58 EMQAKVEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNR 117
Query: 283 INVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNK--KVDPKK 420
+ + D G+ +GFA++ F E++ + + E ++ + KV PK+
Sbjct: 118 VTILMD-KFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKR 164
Score = 36.3 bits (80), Expect = 0.018
Identities = 21/95 (22%), Positives = 43/95 (45%)
Frame = +1
Query: 358 IDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPF 537
++K M A + + K + ++VG + + +E++ F GT+ V +
Sbjct: 63 VEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILM 122
Query: 538 DKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGK 642
DK Q KGF ++ F + V + L+ + + G+
Sbjct: 123 DKF-GQPKGFAYVEFVEVEAVQEALQLNESELHGR 156
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 47.6 bits (108), Expect = 7e-06
Identities = 47/171 (27%), Positives = 73/171 (42%), Gaps = 12/171 (7%)
Frame = +1
Query: 166 SAEAP-GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 342
S E P G R LFV ++ D EL F +GEI S+ +SRGF I +
Sbjct: 174 SVEHPNGEHPSRTLFVRNINSSVEDSELSALFEPFGEIRSLYTAC-----KSRGFVMISY 228
Query: 343 KAPESIDKVMAAGEHTINNK----------KVDPKKAKARHGKIFVGGLSSEISDDEIRN 492
+ M A ++T+ K K +P + G + + + + +S+DE+
Sbjct: 229 YDIRAAHAAMRALQNTLLRKRTLDIHFSIPKENPSEKDMNQGTLVIFNVDTTVSNDELLQ 288
Query: 493 FFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRT-IGGK 642
F +G I E+ +T N R+ FI + + LK R+ IGGK
Sbjct: 289 LFGAYGEIREIR----ETPN-RRFHRFIEYYDVRDAETALKALNRSEIGGK 334
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 47.6 bits (108), Expect = 7e-06
Identities = 47/171 (27%), Positives = 73/171 (42%), Gaps = 12/171 (7%)
Frame = +1
Query: 166 SAEAP-GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 342
S E P G R LFV ++ D EL F +GEI S+ +SRGF I +
Sbjct: 187 SVEHPNGEHPSRTLFVRNINSSVEDSELSALFEPFGEIRSLYTAC-----KSRGFVMISY 241
Query: 343 KAPESIDKVMAAGEHTINNK----------KVDPKKAKARHGKIFVGGLSSEISDDEIRN 492
+ M A ++T+ K K +P + G + + + + +S+DE+
Sbjct: 242 YDIRAAHAAMRALQNTLLRKRTLDIHFSIPKENPSEKDMNQGTLVIFNVDTTVSNDELLQ 301
Query: 493 FFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRT-IGGK 642
F +G I E+ +T N R+ FI + + LK R+ IGGK
Sbjct: 302 LFGAYGEIREIR----ETPN-RRFHRFIEYYDVRDAETALKALNRSEIGGK 347
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 47.2 bits (107), Expect = 9e-06
Identities = 19/73 (26%), Positives = 41/73 (56%)
Frame = +1
Query: 190 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 369
D R +FVG + + T +E++ HF G + + + TD G+ +GFA++ F E++ +
Sbjct: 90 DARSVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTD-KFGQPKGFAYVEFVEVEAVQEA 148
Query: 370 MAAGEHTINNKKV 408
+ E ++ +++
Sbjct: 149 LQLNESELHGRQL 161
Score = 36.7 bits (81), Expect = 0.013
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Frame = +1
Query: 358 IDKVMAAGEH-TINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMP 534
++K M A + +I + ++ AR +FVG + + +E++ F GT+ V +
Sbjct: 67 VEKEMGAQDPASIAANQAGKEEVDAR--SVFVGNVDYACTPEEVQQHFQTCGTVHRVTIL 124
Query: 535 FDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGK 642
DK Q KGF ++ F + V + L+ + + G+
Sbjct: 125 TDKF-GQPKGFAYVEFVEVEAVQEALQLNESELHGR 159
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 47.2 bits (107), Expect = 9e-06
Identities = 42/165 (25%), Positives = 70/165 (42%), Gaps = 16/165 (9%)
Frame = +1
Query: 145 GDSQDHNSAEAPGRDDDRK-LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSR 321
G Q ++ PG D K L++G L + + F GE S V + TG+S
Sbjct: 42 GQHQYGIGSQNPGSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSE 101
Query: 322 GFAFIVFKAPESIDKV--------MAAGEHTINNKKVDPKKAKARHGK------IFVGGL 459
G+ FI F + ++V M + E T + R IFVG L
Sbjct: 102 GYGFIEFVSHSVAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDL 161
Query: 460 SSEISDDEIRNFFSE-FGTILEVEMPFDKTKNQRKGFCFITFESE 591
+ E++D + + F +G++ ++ D+T + KG+ F+ F E
Sbjct: 162 APEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADE 206
Score = 42.3 bits (95), Expect = 3e-04
Identities = 15/31 (48%), Positives = 25/31 (80%)
Frame = +1
Query: 442 IFVGGLSSEISDDEIRNFFSEFGTILEVEMP 534
IFVGGL + ++DDE+++ F +FG +L V++P
Sbjct: 262 IFVGGLDANVTDDELKSIFGQFGELLHVKIP 292
Score = 37.5 bits (83), Expect = 0.008
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +1
Query: 154 QDHNSAEAPGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFA 330
Q+ A A D ++ +FVGGL TD EL+ FG +GE+ ++VK P G+ GF
Sbjct: 245 QNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGEL--LHVKIPP--GKRCGFV 300
Query: 331 FIVFKA 348
KA
Sbjct: 301 QYANKA 306
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 47.2 bits (107), Expect = 9e-06
Identities = 23/74 (31%), Positives = 38/74 (51%)
Frame = +1
Query: 145 GDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRG 324
G S+ + + + L+V GLS TDK+L HF G++ S + +P T SRG
Sbjct: 55 GRSRSRSRGRSEVENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRG 114
Query: 325 FAFIVFKAPESIDK 366
FAF+ + + ++
Sbjct: 115 FAFVTMSSLKDAER 128
Score = 31.5 bits (68), Expect = 0.50
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = +1
Query: 442 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 588
++V GLS+ ++D ++ F++ G + + + +GF F+T S
Sbjct: 74 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSS 122
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 47.2 bits (107), Expect = 9e-06
Identities = 44/178 (24%), Positives = 75/178 (42%), Gaps = 19/178 (10%)
Frame = +1
Query: 139 GGGDSQDHNSAEAPGRDDDR--KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 312
GG + S A D KL+V +S T+ ++R F YG + I + D TG
Sbjct: 89 GGSSLRKRRSQSATDNADGSIAKLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTG 148
Query: 313 RSRGFAFIVFKAPESIDKVMAA--GEHTINNKKVDPK-----KAKARHG----------K 441
+ FI +K E + +AA + T + + K + R G K
Sbjct: 149 ERAAYCFIKYKKVEEGNAAIAALTEQFTFPGEMLPVKVRFAEAERERIGFAPVQLPDNPK 208
Query: 442 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 615
++V L+ + + E+ FS +G I ++ M D K R G+ F+ F +++ +K
Sbjct: 209 LYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALDDMKICR-GYAFVQFSCKEMALAAIK 265
>At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 817
Score = 46.8 bits (106), Expect = 1e-05
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 6/122 (4%)
Frame = +1
Query: 94 QDITTDNQLNGNAENGG-GDSQDHNSAEA-PGRD----DDRKLFVGGLSWETTDKELRDH 255
Q T N AENG DS + +A P + D+ F+ LS + ++++R
Sbjct: 611 QSATVPATKNVKAENGKTADSDKEETEDAKPLKPKVYRDECTAFISNLSVKAQEEDIRKF 670
Query: 256 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 435
FG G ++SI + +TG+ RG A+ F E + +A KK+ ++ +
Sbjct: 671 FGDDGGVDSIRILHHKDTGKPRGLAYADFVDDEHLAAAIAKNRKMFFGKKISIARSNPKK 730
Query: 436 GK 441
GK
Sbjct: 731 GK 732
>At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 816
Score = 46.8 bits (106), Expect = 1e-05
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 6/122 (4%)
Frame = +1
Query: 94 QDITTDNQLNGNAENGG-GDSQDHNSAEA-PGRD----DDRKLFVGGLSWETTDKELRDH 255
Q T N AENG DS + +A P + D+ F+ LS + ++++R
Sbjct: 611 QSATVPATKNVKAENGKTADSDKEETEDAKPLKPKVYRDECTAFISNLSVKAQEEDIRKF 670
Query: 256 FGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH 435
FG G ++SI + +TG+ RG A+ F E + +A KK+ ++ +
Sbjct: 671 FGDDGGVDSIRILHHKDTGKPRGLAYADFVDDEHLAAAIAKNRKMFFGKKISIARSNPKK 730
Query: 436 GK 441
GK
Sbjct: 731 GK 732
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 46.8 bits (106), Expect = 1e-05
Identities = 29/99 (29%), Positives = 50/99 (50%)
Frame = +1
Query: 145 GDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRG 324
G + + + E+P R L+VGGL+ ++++RD F A+GEIESI + + +
Sbjct: 211 GKAGEMGTLESPEDQSIRTLYVGGLNSRVLEQDIRDQFYAHGEIESIRILAE------KA 264
Query: 325 FAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGK 441
AF+ + E +K A E N V+ ++ K G+
Sbjct: 265 CAFVTYTTREGAEK---AAEELSNRLVVNGQRLKLTWGR 300
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/68 (30%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Frame = +1
Query: 442 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES-EQVVNDLLKT 618
+FV G+S +++ + FS++G +L+V++ DK + + KGF ++TF S E+ LL+
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLEL 82
Query: 619 PKRTIGGK 642
+ + G+
Sbjct: 83 NAQLVDGR 90
Score = 45.6 bits (103), Expect = 3e-05
Identities = 19/57 (33%), Positives = 34/57 (59%)
Frame = +1
Query: 202 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 372
LFV G+S+ +T++ L F YG++ ++V D R +GFA++ F + E +K +
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKAL 79
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 46.8 bits (106), Expect = 1e-05
Identities = 27/99 (27%), Positives = 52/99 (52%)
Frame = +1
Query: 145 GDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRG 324
G + + + E+P + + L+VGGL+ ++++RD F A+GEIESI + D +
Sbjct: 211 GKAGEMGTLESPDDESIKTLYVGGLNSRILEQDIRDQFYAHGEIESIRILAD------KA 264
Query: 325 FAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHGK 441
AF+ + + E +K A + N ++ ++ K G+
Sbjct: 265 CAFVTYTSREGAEK---AAQELSNRLVINGQRLKLTWGR 300
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 46.0 bits (104), Expect = 2e-05
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
Frame = +1
Query: 178 PGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF----- 342
P D L V +++ TT +L F YG++ + + D TG SRGFAF+ +
Sbjct: 10 PDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDE 69
Query: 343 --KAPESID-KVMAAGEHTINNKKVDPKKAKARHGKI 444
KA E +D +V+ E T+ K P K G++
Sbjct: 70 AHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRV 106
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 46.0 bits (104), Expect = 2e-05
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
Frame = +1
Query: 178 PGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF----- 342
P D L V +++ TT +L F YG++ + + D TG SRGFAF+ +
Sbjct: 10 PDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDE 69
Query: 343 --KAPESID-KVMAAGEHTINNKKVDPKKAKARHGKI 444
KA E +D +V+ E T+ K P K G++
Sbjct: 70 AHKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRV 106
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/55 (38%), Positives = 32/55 (58%)
Frame = +1
Query: 202 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 366
L+V GLS TDK+L HF G++ S + +P T SRGFAF+ + + ++
Sbjct: 73 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAER 127
Score = 31.5 bits (68), Expect = 0.50
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = +1
Query: 442 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 588
++V GLS+ ++D ++ F++ G + + + +GF F+T S
Sbjct: 73 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSS 121
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 46.0 bits (104), Expect = 2e-05
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Frame = +1
Query: 172 EAPGRDD-DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK- 345
E DD +R LF+ L ++ T +E++ F +GE+ES+++ T R G AF+ FK
Sbjct: 552 ETQDNDDFERTLFIRNLPFDVTKEEVKQRFTVFGEVESLSLVLHKVTKRPEGTAFVKFKT 611
Query: 346 APESIDKVMAA 378
A S+ + AA
Sbjct: 612 ADASVAAISAA 622
Score = 39.1 bits (87), Expect = 0.002
Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Frame = +1
Query: 142 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSR 321
G + ++ E + V GL + T+ +L + F G + + T+ + R
Sbjct: 2 GKNKRERKDGEEKSPHAAATVCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHR 61
Query: 322 GFAFIVFKAPESIDK-VMAAGEHTINNKKVDPKKAKAR 432
GFAF+ F E +++ + T+ +++ K+A R
Sbjct: 62 GFAFVKFALQEDVNRAIELKNGSTVGGRRITVKQAAHR 99
Score = 38.3 bits (85), Expect = 0.004
Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Frame = +1
Query: 400 KKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFIT 579
+K +K+ + V GL I++ ++ FSE G + + +K ++ +GF F+
Sbjct: 8 RKDGEEKSPHAAATVCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVK 67
Query: 580 FESEQVVNDLLKTPK-RTIGGK 642
F ++ VN ++ T+GG+
Sbjct: 68 FALQEDVNRAIELKNGSTVGGR 89
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +1
Query: 199 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 342
KL + L ++ +++ F A G + + + + TG +GFAF+ F
Sbjct: 332 KLIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKF 379
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 46.0 bits (104), Expect = 2e-05
Identities = 46/173 (26%), Positives = 73/173 (42%), Gaps = 26/173 (15%)
Frame = +1
Query: 202 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI------- 360
++V L TD +L+ FG +GEI S V D G+SR F F+ F+ E+
Sbjct: 121 VYVKNLVETATDADLKRLFGEFGEITSAVVMKD-GEGKSRRFGFVNFEKAEAAVTAIEKM 179
Query: 361 ------DKVMAAGEHTINNKKVDPKKAK-----------ARHG-KIFVGGLSSEISDDEI 486
+K + G + + KAK R G ++V L + + ++
Sbjct: 180 NGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKL 239
Query: 487 RNFFSEFGTILEVEMPFDKTKNQRKGFCFITFE-SEQVVNDLLKTPKRTIGGK 642
FSEFGTI ++ + KG F+ F SE+ +LK + +G K
Sbjct: 240 EELFSEFGTITSCKV-MVHSNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNK 291
Score = 37.1 bits (82), Expect = 0.010
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +1
Query: 409 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 588
DP + G +FV L I + ++ + FS FG +L ++ D KG+ F+ F S
Sbjct: 22 DPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARD-ASGVSKGYGFVQFYS 80
Query: 589 E 591
+
Sbjct: 81 D 81
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 44.8 bits (101), Expect = 5e-05
Identities = 20/61 (32%), Positives = 39/61 (63%)
Frame = +1
Query: 160 HNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIV 339
+N A G D + LFV L++E+++ +++ F +YG I+ +++ TD T + +G+AFI
Sbjct: 127 NNDPNATG-DPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIE 185
Query: 340 F 342
+
Sbjct: 186 Y 186
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +1
Query: 409 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 582
DP + +FV L+ E S+ +I+ F +G I V + D+ N+ KG+ FI +
Sbjct: 129 DPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEY 186
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 44.8 bits (101), Expect = 5e-05
Identities = 30/75 (40%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Frame = +1
Query: 145 GDSQDHNSAEAPGRDDDRK----LFVGGLSWETTDKELRDHFGAYGEIESI----NVKTD 300
G N A A G+ +D +FVG LS E TD L D F A+ S V D
Sbjct: 127 GQPMKVNWAYATGQREDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWD 186
Query: 301 PNTGRSRGFAFIVFK 345
TGRSRGF F+ F+
Sbjct: 187 QKTGRSRGFGFVSFR 201
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 44.8 bits (101), Expect = 5e-05
Identities = 44/177 (24%), Positives = 75/177 (42%), Gaps = 27/177 (15%)
Frame = +1
Query: 193 DRKLFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 369
D +FVG L+ + +D L + F Y +++ V D NTGRS+G+ F+ F K
Sbjct: 198 DLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKA 257
Query: 370 MA---AGEHTINNKKVDPKKAKARHGKIFVGG-----------------------LSSEI 471
M + + ++ P + +G GG L S +
Sbjct: 258 MTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSV 317
Query: 472 SDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGK 642
+D++++ FSEFG I+ V++P KG F+ F + + L+ T+ GK
Sbjct: 318 TDEDLKQPFSEFGEIVSVKIPVG------KGCGFVQFVNRPNAEEALEKLNGTVIGK 368
Score = 37.5 bits (83), Expect = 0.008
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Frame = +1
Query: 106 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESI 285
T + NG + GG + G + +FVGGL TD++L+ F +GEI S+
Sbjct: 277 TPRKTNGYQQQGGY-MPSGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSV 335
Query: 286 NVKTDPNTGRSRGFAFIVFK--APESIDKV 369
+ G+ GF V + A E+++K+
Sbjct: 336 KIP----VGKGCGFVQFVNRPNAEEALEKL 361
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 44.4 bits (100), Expect = 7e-05
Identities = 20/66 (30%), Positives = 38/66 (57%)
Frame = +1
Query: 181 GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI 360
G + ++FVGGL + T+ ++R+ ++G ++ ++ D TG S+G+AF V++
Sbjct: 354 GLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVT 413
Query: 361 DKVMAA 378
D AA
Sbjct: 414 DIACAA 419
Score = 35.1 bits (77), Expect = 0.041
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = +1
Query: 439 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVN 603
+IFVGGL ++ ++R FG + ++ D+ KG+ F ++ V +
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTD 414
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 44.4 bits (100), Expect = 7e-05
Identities = 20/66 (30%), Positives = 38/66 (57%)
Frame = +1
Query: 181 GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI 360
G + ++FVGGL + T+ ++R+ ++G ++ ++ D TG S+G+AF V++
Sbjct: 354 GLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVT 413
Query: 361 DKVMAA 378
D AA
Sbjct: 414 DIACAA 419
Score = 35.1 bits (77), Expect = 0.041
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = +1
Query: 439 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVN 603
+IFVGGL ++ ++R FG + ++ D+ KG+ F ++ V +
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTD 414
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 44.4 bits (100), Expect = 7e-05
Identities = 20/66 (30%), Positives = 38/66 (57%)
Frame = +1
Query: 181 GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI 360
G + ++FVGGL + T+ ++R+ ++G ++ ++ D TG S+G+AF V++
Sbjct: 354 GLEGPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVT 413
Query: 361 DKVMAA 378
D AA
Sbjct: 414 DIACAA 419
Score = 35.1 bits (77), Expect = 0.041
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = +1
Query: 439 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVN 603
+IFVGGL ++ ++R FG + ++ D+ KG+ F ++ V +
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTD 414
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 44.4 bits (100), Expect = 7e-05
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Frame = +1
Query: 205 FVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI-DKVM 372
FV GL +T +K+L D F +G + + D +TG+SR F F+ F+ +S+ D +M
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIM 66
Score = 44.4 bits (100), Expect = 7e-05
Identities = 16/56 (28%), Positives = 35/56 (62%)
Frame = +1
Query: 445 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 612
FV GL + + ++ + FS+FG +++ ++ +D+ + + F F+TFE E+ + D +
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAI 65
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 44.0 bits (99), Expect = 9e-05
Identities = 44/188 (23%), Positives = 82/188 (43%), Gaps = 24/188 (12%)
Frame = +1
Query: 151 SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFA 330
SQ+ + E + RKLFV L W + ++ + FG G + ++ + + G++RGFA
Sbjct: 80 SQEEKTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKD-GKNRGFA 138
Query: 331 FIVF----KAPESIDKV--------MAAGEHTINNKKVDPKK---------AKARHGKIF 447
F+ +A +IDK + + KK PK RH K++
Sbjct: 139 FVTMASGEEAQAAIDKFDTFQVSGRIISVSFARRFKKPTPKSPNDLPSPAPGDTRH-KLY 197
Query: 448 VGGLSSEISDDEIRNFF--SEFGTILEVEMPFDKTKNQRKGFCFITFES-EQVVNDLLKT 618
V L+ + +R F ++F + + F + + G+ F++F + E+ N + K
Sbjct: 198 VSNLAWKARSTHLRELFTAADFNPV-SARVVFADPEGRSSGYGFVSFATREEAENAITKL 256
Query: 619 PKRTIGGK 642
+ I G+
Sbjct: 257 NGKEIMGR 264
Score = 37.1 bits (82), Expect = 0.010
Identities = 22/76 (28%), Positives = 37/76 (48%)
Frame = +1
Query: 361 DKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFD 540
+K +A E T +K + + K+FV L +S ++I F + GT+ VE+
Sbjct: 70 EKETSADEETSQEEKTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQ 129
Query: 541 KTKNQRKGFCFITFES 588
K + +GF F+T S
Sbjct: 130 K-DGKNRGFAFVTMAS 144
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 44.0 bits (99), Expect = 9e-05
Identities = 18/54 (33%), Positives = 33/54 (61%)
Frame = +1
Query: 196 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 357
R +FVG + ++ T+++LR+ G G + S + TD TG+ +G+ F +K E+
Sbjct: 9 RCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEET 62
Score = 33.1 bits (72), Expect = 0.16
Identities = 11/51 (21%), Positives = 28/51 (54%)
Frame = +1
Query: 442 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 594
+FVG + + +++++R E G ++ + D+ + KG+ F ++ E+
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEE 61
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/64 (31%), Positives = 35/64 (54%)
Frame = +1
Query: 202 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 381
LFVG LS TT+ LR+ YG I+++ + TG SRG+ F+ ++ + + +
Sbjct: 66 LFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDA 125
Query: 382 EHTI 393
H++
Sbjct: 126 HHSL 129
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Frame = +1
Query: 151 SQDHNSAEAPGRDDDRK------LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 312
S+D S + GR ++ + V G+ ET ++++ + FG +GEI+++N+ D +G
Sbjct: 74 SRDFESLGSDGRPGPQRSVEGWIILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSG 133
Query: 313 RSRGFAFIVFKAPESIDKVMAA 378
+G+A I ++ E ++A
Sbjct: 134 YVKGYALIEYEKKEEAQSAISA 155
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +1
Query: 442 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 594
I V G+ E +++I N F +FG I + + D+ KG+ I +E ++
Sbjct: 97 ILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKE 147
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 43.2 bits (97), Expect = 2e-04
Identities = 25/89 (28%), Positives = 46/89 (51%)
Frame = +1
Query: 376 AGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQ 555
AG H N D ++ + IFVGGL ++++++++ FS+FG ++ V++P
Sbjct: 310 AGGHGGNGSMSD---GESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVG----- 361
Query: 556 RKGFCFITFESEQVVNDLLKTPKRTIGGK 642
KG F+ F + Q + + T+ GK
Sbjct: 362 -KGCGFVQFANRQSAEEAIGNLNGTVIGK 389
Score = 41.5 bits (93), Expect = 5e-04
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +1
Query: 193 DRKLFVGGLSWETTDKELRDHF-GAYGEIESINVKTDPNTGRSRGFAFIVF 342
D +FVG L+ + +D L + F G Y ++ V D NTGRS+G+ F+ F
Sbjct: 212 DLSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRF 262
Score = 37.1 bits (82), Expect = 0.010
Identities = 22/96 (22%), Positives = 43/96 (44%)
Frame = +1
Query: 115 QLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVK 294
Q NG+ N + + G ++ +FVGGL + T+++L F +GE+ S+ +
Sbjct: 300 QQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIP 359
Query: 295 TDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNK 402
+G F+ F +S ++ + T+ K
Sbjct: 360 V------GKGCGFVQFANRQSAEEAIGNLNGTVIGK 389
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 42.3 bits (95), Expect = 3e-04
Identities = 26/79 (32%), Positives = 41/79 (51%)
Frame = +1
Query: 151 SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFA 330
+QDH SA + V GLS ++T+++L +G + + V + N+G SRGFA
Sbjct: 288 NQDHFSATPSAT-----VVVKGLSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFA 342
Query: 331 FIVFKAPESIDKVMAAGEH 387
FI F ++ +M EH
Sbjct: 343 FIDFPTVDAARTMMDRIEH 361
Score = 40.3 bits (90), Expect = 0.001
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Frame = +1
Query: 202 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 381
L V GL + ++ LR F + I+ + + D T SRGFAF+ F + E K + A
Sbjct: 460 LVVRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEAT 519
Query: 382 EHTI---NNKKVDPKKAKARHG 438
T N K + AK+ HG
Sbjct: 520 NRTALERNGKILRVAYAKSVHG 541
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/57 (21%), Positives = 29/57 (50%)
Frame = +1
Query: 442 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 612
+ V GLS + +++++ +E+G + V + ++ +GF FI F + ++
Sbjct: 300 VVVKGLSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFAFIDFPTVDAARTMM 356
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +1
Query: 196 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 375
R +FV + + T L HF +GE+ + TDP TG+ G A+I F E+ + ++
Sbjct: 516 RTIFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAAENALS 575
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = +1
Query: 442 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 612
IFV + + D + F++FG +L+ + D Q G +I F ++ + L
Sbjct: 518 IFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAAENAL 574
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/63 (31%), Positives = 34/63 (53%)
Frame = +1
Query: 184 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 363
R+D+ + V LS +T + +L + F +G + + V D TG SRGF F+ F + E
Sbjct: 209 RNDENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQ 268
Query: 364 KVM 372
+ +
Sbjct: 269 RAI 271
Score = 30.7 bits (66), Expect = 0.87
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +1
Query: 448 VGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 594
V LS + + ++ F FG + V + D+ +GF F+ F S +
Sbjct: 217 VTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSRE 265
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 42.3 bits (95), Expect = 3e-04
Identities = 25/61 (40%), Positives = 39/61 (63%)
Frame = +1
Query: 202 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 381
L+VG L+ ETT+ +L + FG YG+I+ I V + SRGFAFI ++ +++ +AA
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDIDRITVYS------SRGFAFIYYR---HVEEAVAAK 70
Query: 382 E 384
E
Sbjct: 71 E 71
Score = 27.9 bits (59), Expect = 6.1
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 442 IFVGGLSSEISDDEIRNFFSEFGTI 516
++VGG+ +S D++ FS+FG I
Sbjct: 252 LWVGGIGPNVSKDDLEEEFSKFGKI 276
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/64 (29%), Positives = 33/64 (51%)
Frame = +1
Query: 442 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 621
+++G +S +++++ FS G I ++ M DK GFCF+ F S + D +K
Sbjct: 36 VYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVKYI 95
Query: 622 KRTI 633
TI
Sbjct: 96 SGTI 99
Score = 40.7 bits (91), Expect = 8e-04
Identities = 18/54 (33%), Positives = 33/54 (61%)
Frame = +1
Query: 202 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 363
+++G +S+ TT+++L + F GEI+ I + D NT GF F++F + E +
Sbjct: 36 VYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTE 89
>At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 363
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/43 (41%), Positives = 28/43 (65%)
Frame = +1
Query: 172 EAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTD 300
E P + + L+VGGL+ ++++ DHF AYGE+ESI V +
Sbjct: 217 EPPEDESIKTLYVGGLNSRIFEQDIHDHFYAYGEMESIRVMAE 259
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 41.9 bits (94), Expect = 4e-04
Identities = 14/58 (24%), Positives = 35/58 (60%)
Frame = +1
Query: 442 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 615
+++G + +SD + + + G ++++ +P DK ++ KGF F +E+E++ + +K
Sbjct: 9 VYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEIADYAVK 66
Score = 31.5 bits (68), Expect = 0.50
Identities = 13/54 (24%), Positives = 27/54 (50%)
Frame = +1
Query: 202 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 363
+++G + +D+ L D G + +++ D T + +GFAF ++ E D
Sbjct: 9 VYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEIAD 62
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 41.9 bits (94), Expect = 4e-04
Identities = 16/47 (34%), Positives = 29/47 (61%)
Frame = +1
Query: 442 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 582
++VGGL+ E+++ + F FG I +V+ P D+ + + F F+TF
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTF 61
Score = 35.1 bits (77), Expect = 0.041
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +1
Query: 202 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 372
L+VGGL+ E + L F +G+I+ + D + R F F+ F E M
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAM 71
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 41.1 bits (92), Expect = 6e-04
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +1
Query: 202 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 351
LFVG L W TTD EL YG ++ + + +G+S+G+ + F P
Sbjct: 236 LFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDP 285
Score = 31.5 bits (68), Expect = 0.50
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +1
Query: 442 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 582
+FVG L +D E+ ++G + EV+ +K + KG+C + F
Sbjct: 236 LFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEF 282
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 40.7 bits (91), Expect = 8e-04
Identities = 45/185 (24%), Positives = 77/185 (41%), Gaps = 40/185 (21%)
Frame = +1
Query: 181 GRDDDRKL----FVGGLSWETTDKELRDHFGAYGEIESINVKTDP--------------- 303
G DD+ KL FVG L + K + F +GE+ES+ +++ P
Sbjct: 162 GFDDESKLLRTVFVGNLPLKVKKKVILKEFSKFGEVESVRIRSVPIVDSKRTRKGAIMLK 221
Query: 304 --NTGRSRGFAFIVFKAPESIDKVMA------AGEHTINNKKVDPKKAKARHG------- 438
N S A++VF+ +S +A G H ++ P+K + H
Sbjct: 222 QINEKASSVHAYVVFETEQSAAASLAHNMSLIDGNHVRVDRACPPRKKQKGHDDTHLYDP 281
Query: 439 --KIFVGGLSSEISDDEIRNFF---SEFGTILE-VEMPFDKTKNQRKGFCFITFESEQVV 600
+F+G L ++ D+E+ F S +E V + D N KG ++ F++ +
Sbjct: 282 KRTVFMGNLPFDVKDEEVYQLFTGKSNLENSIEAVRVIRDPHLNIGKGIAYVLFKTREAA 341
Query: 601 NDLLK 615
N +LK
Sbjct: 342 NLVLK 346
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Frame = +1
Query: 187 DDDRKLFVGGLSWETTDKELRDHF----GAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 354
D R +F+G L ++ D+E+ F IE++ V DP+ +G A+++FK E
Sbjct: 280 DPKRTVFMGNLPFDVKDEEVYQLFTGKSNLENSIEAVRVIRDPHLNIGKGIAYVLFKTRE 339
Query: 355 SIDKVMAAGEHTINNKKVDPKKAK 426
+ + V+ G + +++ + K
Sbjct: 340 AANLVLKKGYLKLRERELRISRVK 363
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 40.7 bits (91), Expect = 8e-04
Identities = 38/176 (21%), Positives = 73/176 (41%), Gaps = 14/176 (7%)
Frame = +1
Query: 142 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSR 321
GG ++ P ++ L++G + + E+ F +G ++ + V + TG+S+
Sbjct: 42 GGPARKAPVTTPPLQNKATVLYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSK 101
Query: 322 GFAFIVFKAPESIDKVMAAG--------EHTINNKKVDPKKAKARHGKIF------VGGL 459
F FI F+ PE + +AAG EH + ++P+ K + F V +
Sbjct: 102 HFGFIQFEDPEVAE--IAAGAMNDYLLMEHMLKVHVIEPENVKPNLWRGFKCNFKPVDSV 159
Query: 460 SSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKR 627
E E +L+ + D+ + +R I +E ++V + PKR
Sbjct: 160 QIERRQLNKERTLEEHRKMLQKIVKKDQKRRKRIEAAGIEYECPELVGNTQPVPKR 215
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Frame = +1
Query: 187 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 366
DD ++VGGL ++ T++ +R F YG + ++ + D + R + + F+ F S D
Sbjct: 4 DDGNSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSV-RGKCYGFVTFSNRRSADD 62
Query: 367 VMAAGE-HTINNKKVDPKKAKARHGKIFVG 453
+ + +I + V R G++ G
Sbjct: 63 AIEDMDGKSIGGRAVRVNDVTTRGGRMNPG 92
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/51 (39%), Positives = 29/51 (56%)
Frame = +1
Query: 439 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESE 591
KI V L S+D ++ FS FG I EV++ D+ + KG+ FI F S+
Sbjct: 41 KIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQ 91
Score = 39.1 bits (87), Expect = 0.002
Identities = 18/52 (34%), Positives = 30/52 (57%)
Frame = +1
Query: 199 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 354
K+ V L + T++ L+ F A+GEI + + D RS+G+AFI F + +
Sbjct: 41 KIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQD 92
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 39.9 bits (89), Expect = 0.001
Identities = 28/97 (28%), Positives = 42/97 (43%)
Frame = +1
Query: 142 GGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSR 321
G +D +E P ++D +LF G L E D L F + V D TG+++
Sbjct: 121 GQSWEDPTLSEWP--ENDYRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTK 178
Query: 322 GFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 432
G+ F+ F P +AA +N K V + K R
Sbjct: 179 GYGFVSFLNPAD----LAAALKEMNGKYVGNRPIKLR 211
Score = 36.3 bits (80), Expect = 0.018
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = +1
Query: 439 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 582
++F G L +E++DD + F+ F T ++ DK + KG+ F++F
Sbjct: 138 RLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSF 185
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/76 (26%), Positives = 35/76 (46%)
Frame = +1
Query: 145 GDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRG 324
G + ++ R D+ + V LS +T +L + F +G + +V D T SRG
Sbjct: 157 GADRKAGGSDMRSRHDENSVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRG 216
Query: 325 FAFIVFKAPESIDKVM 372
F F+ F + E + +
Sbjct: 217 FGFVSFVSREDAQRAI 232
Score = 32.3 bits (70), Expect = 0.29
Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +1
Query: 397 NKKVDPKKAKARHGK--IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFC 570
++K ++RH + + V LS + ++ F FG + + D+ + +GF
Sbjct: 159 DRKAGGSDMRSRHDENSVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFG 218
Query: 571 FITFESEQ 594
F++F S +
Sbjct: 219 FVSFVSRE 226
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/66 (27%), Positives = 35/66 (53%)
Frame = +1
Query: 202 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 381
L+V L + T+ ++ F +G++ + V D +T +SRG AF+++ + E K +
Sbjct: 59 LYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSM 118
Query: 382 EHTINN 399
+ I N
Sbjct: 119 DAKILN 124
>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 39.5 bits (88), Expect = 0.002
Identities = 38/144 (26%), Positives = 59/144 (40%), Gaps = 11/144 (7%)
Frame = +1
Query: 127 NAENGGGD-SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDP 303
N NG G + +H E P R LFV ++ D EL F YG+I ++
Sbjct: 148 NIPNGAGTVAGEHPYGEHPSRT----LFVRNINSNVEDSELTALFEQYGDIRTLY----- 198
Query: 304 NTGRSRGFAFIVFKAPESIDKVMAAGEH-TINNKKVD---------PKKAKARHGKIFVG 453
T + RGF I + S M + ++ + +K+D P + G + V
Sbjct: 199 TTCKHRGFVMISYYDIRSARMAMRSLQNKPLRRRKLDIHFSIPKDNPSEKDMNQGTLVVF 258
Query: 454 GLSSEISDDEIRNFFSEFGTILEV 525
L IS+D++ F G I E+
Sbjct: 259 NLDPSISNDDLHGIFGAHGEIKEI 282
>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 39.5 bits (88), Expect = 0.002
Identities = 38/144 (26%), Positives = 59/144 (40%), Gaps = 11/144 (7%)
Frame = +1
Query: 127 NAENGGGD-SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDP 303
N NG G + +H E P R LFV ++ D EL F YG+I ++
Sbjct: 148 NIPNGAGTVAGEHPYGEHPSRT----LFVRNINSNVEDSELTALFEQYGDIRTLY----- 198
Query: 304 NTGRSRGFAFIVFKAPESIDKVMAAGEH-TINNKKVD---------PKKAKARHGKIFVG 453
T + RGF I + S M + ++ + +K+D P + G + V
Sbjct: 199 TTCKHRGFVMISYYDIRSARMAMRSLQNKPLRRRKLDIHFSIPKDNPSEKDMNQGTLVVF 258
Query: 454 GLSSEISDDEIRNFFSEFGTILEV 525
L IS+D++ F G I E+
Sbjct: 259 NLDPSISNDDLHGIFGAHGEIKEI 282
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +1
Query: 202 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 342
LFVG L W TTD E+ YG ++ I + +G+S+G+ + F
Sbjct: 204 LFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEF 250
Score = 34.3 bits (75), Expect = 0.071
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +1
Query: 442 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 582
+FVG L +D EI + S++G + E++ ++ + KG+C + F
Sbjct: 204 LFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEF 250
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 39.1 bits (87), Expect = 0.002
Identities = 22/81 (27%), Positives = 37/81 (45%)
Frame = +1
Query: 151 SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFA 330
S+DH S+ G L + L + +LRD F +G ++ I + + TG RGF
Sbjct: 38 SRDHESSGPSG------LLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFG 91
Query: 331 FIVFKAPESIDKVMAAGEHTI 393
F+ ++ E + M H +
Sbjct: 92 FVKYRYAEDAAEAMKRMNHKV 112
Score = 31.1 bits (67), Expect = 0.66
Identities = 13/68 (19%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +1
Query: 442 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFE-SEQVVNDLLKT 618
+ + L + +++R+ F FG + ++ +P + + +GF F+ + +E + +
Sbjct: 49 LLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRM 108
Query: 619 PKRTIGGK 642
+ IGG+
Sbjct: 109 NHKVIGGR 116
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +1
Query: 433 HGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 582
HG + V + + +E+R F FG + +V +P D Q +GF F+ F
Sbjct: 46 HGSLLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEF 95
Score = 35.1 bits (77), Expect = 0.041
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +1
Query: 202 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 342
L V + + +ELR+ F +G + + + D +G+ RGFAF+ F
Sbjct: 49 LLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEF 95
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 38.3 bits (85), Expect = 0.004
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +1
Query: 151 SQDHNSAEAP-GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGF 327
S+DH S + G + KL++ L + ++++++ F GE++ V D +GRS+G
Sbjct: 70 SEDHRSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGT 128
Query: 328 AFIVF 342
A +V+
Sbjct: 129 AEVVY 133
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 38.3 bits (85), Expect = 0.004
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +1
Query: 151 SQDHNSAEAP-GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGF 327
S+DH S + G + KL++ L + ++++++ F GE++ V D +GRS+G
Sbjct: 6 SEDHRSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGT 64
Query: 328 AFIVF 342
A +V+
Sbjct: 65 AEVVY 69
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 38.3 bits (85), Expect = 0.004
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +1
Query: 151 SQDHNSAEAP-GRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGF 327
S+DH S + G + KL++ L + ++++++ F GE++ V D +GRS+G
Sbjct: 72 SEDHRSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGT 130
Query: 328 AFIVF 342
A +V+
Sbjct: 131 AEVVY 135
Score = 31.5 bits (68), Expect = 0.50
Identities = 21/102 (20%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Frame = +1
Query: 292 KTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARHG-----KIFVGG 456
+ +PN +R + KAPES G +++ D + ++ G K+++
Sbjct: 40 RNNPNRKSTRSAPYQSAKAPES-----TWGHDMFSDRSEDHRSGRSSAGIETGTKLYISN 94
Query: 457 LSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 582
L + +++I+ F+E G + + FD++ + KG + +
Sbjct: 95 LDYGVMNEDIKELFAEVGELKRYTVHFDRS-GRSKGTAEVVY 135
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 38.3 bits (85), Expect = 0.004
Identities = 15/51 (29%), Positives = 30/51 (58%)
Frame = +1
Query: 442 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 594
+FV G S +S+ ++ FSEFG + V++ ++ Q G+ ++ F S++
Sbjct: 60 LFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKE 110
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 38.3 bits (85), Expect = 0.004
Identities = 15/51 (29%), Positives = 30/51 (58%)
Frame = +1
Query: 442 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 594
+FV G S +S+ ++ FSEFG + V++ ++ Q G+ ++ F S++
Sbjct: 79 LFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKE 129
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/77 (23%), Positives = 35/77 (45%)
Frame = +1
Query: 373 AAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKN 552
A+ + + P + +++G L + DD + N FS FG I+ ++ D+
Sbjct: 459 ASAHPGLGSTPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTG 518
Query: 553 QRKGFCFITFESEQVVN 603
KG+ F+ + Q+ N
Sbjct: 519 LSKGYGFVKYADVQMAN 535
Score = 34.7 bits (76), Expect = 0.054
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +1
Query: 127 NAENGGGDSQDHNSA--EAPGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKT 297
NA NG S + P ++ D+ L++G L D L + F ++GEI V
Sbjct: 454 NAGNGASAHPGLGSTPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIK 513
Query: 298 DPNTGRSRGFAFIVF 342
D TG S+G+ F+ +
Sbjct: 514 DRVTGLSKGYGFVKY 528
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/77 (23%), Positives = 35/77 (45%)
Frame = +1
Query: 373 AAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKN 552
A+ + + P + +++G L + DD + N FS FG I+ ++ D+
Sbjct: 459 ASAHPGLGSTPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTG 518
Query: 553 QRKGFCFITFESEQVVN 603
KG+ F+ + Q+ N
Sbjct: 519 LSKGYGFVKYADVQMAN 535
Score = 34.7 bits (76), Expect = 0.054
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +1
Query: 127 NAENGGGDSQDHNSA--EAPGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKT 297
NA NG S + P ++ D+ L++G L D L + F ++GEI V
Sbjct: 454 NAGNGASAHPGLGSTPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIK 513
Query: 298 DPNTGRSRGFAFIVF 342
D TG S+G+ F+ +
Sbjct: 514 DRVTGLSKGYGFVKY 528
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 37.5 bits (83), Expect = 0.008
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +1
Query: 196 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 363
R ++VG L + ++E+ D F YG + I++K P R G+AF+ F+ D
Sbjct: 7 RTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPP---RPPGYAFVEFEDARDAD 59
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +1
Query: 124 GNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEI 276
G GGGD P R + ++ V GL + ++L+DH GE+
Sbjct: 98 GRGGRGGGDGGGRE--RGPSRRSEYRVVVSGLPSSASWQDLKDHMRKGGEV 146
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 37.5 bits (83), Expect = 0.008
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +1
Query: 196 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 363
R ++VG L + ++E+ D F YG + I++K P R G+AF+ F+ D
Sbjct: 7 RTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPP---RPPGYAFVEFEDARDAD 59
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +1
Query: 124 GNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEI 276
G GGGD P R + ++ V GL + ++L+DH GE+
Sbjct: 98 GRGGRGGGDGGGRE--RGPSRRSEYRVVVSGLPSSASWQDLKDHMRKGGEV 146
>At1g45100.1 68414.m05170 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Nicotiana tabacum] GI:7673355, [Cucumis
sativus] GI:7528270; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 497
Score = 37.5 bits (83), Expect = 0.008
Identities = 34/149 (22%), Positives = 64/149 (42%), Gaps = 10/149 (6%)
Frame = +1
Query: 172 EAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 351
E P D + V LS T ++ F ++ S+ + + + G+ G+ F+ F +
Sbjct: 150 ETPPDFVDEVVIVSNLSPLTKIAHIKGFFNGVAQVVSVRLVVN-HEGKHVGYGFVEFASA 208
Query: 352 ESIDKVMAA--GEHTINNKKVDPK--------KAKARHGKIFVGGLSSEISDDEIRNFFS 501
+K + GE+ N+K + K + A +FV L I +I NFF
Sbjct: 209 YGANKALEEKNGEYLHNHKILLMKGHESPGFAEEAAITKTLFVANLRDSIQISDIINFFK 268
Query: 502 EFGTILEVEMPFDKTKNQRKGFCFITFES 588
+ G ++ V + ++ + G+ F+ F S
Sbjct: 269 DVGEVVHVRL-IVNSQGKHAGWGFVEFAS 296
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 37.1 bits (82), Expect = 0.010
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = +1
Query: 193 DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 363
+R ++VG L + E+ D F YG I I++K P R G+AF+ F+ P D
Sbjct: 6 NRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPP---RPPGYAFVEFEDPRDAD 59
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +1
Query: 151 SQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEI 276
S ++++ AP R D ++ V GL + ++L+DH G++
Sbjct: 94 SSSYSASRAPSRRSDYRVLVTGLPPSASWQDLKDHMRKAGDV 135
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 36.7 bits (81), Expect = 0.013
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +1
Query: 409 DPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRK-GFCFITFE 585
+P++ + GKIFVG L + I E FF +FG I V + + ++ GF FI +
Sbjct: 156 NPQQEFRQEGKIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNAGFGFIIYA 215
Query: 586 SEQ 594
+E+
Sbjct: 216 AEK 218
Score = 33.9 bits (74), Expect = 0.094
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +1
Query: 199 KLFVGGLSWETTDKELRDHFGAYGEIES-INVKTDPNTGRSRGFAFIVFKAPESIDKVM 372
K+FVG L E + F +G IE+ I +K ++ GF FI++ A +S K +
Sbjct: 166 KIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNAGFGFIIYAAEKSAMKAV 224
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 36.3 bits (80), Expect = 0.018
Identities = 20/54 (37%), Positives = 29/54 (53%)
Frame = +1
Query: 454 GLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 615
GLS+ +D +R F+ F +++ D+ + KGF FITFESE LK
Sbjct: 77 GLSAYTTDQSLRQLFAPFARLIK-----DQQTQRPKGFGFITFESEDDAQKALK 125
Score = 35.1 bits (77), Expect = 0.041
Identities = 22/65 (33%), Positives = 33/65 (50%)
Frame = +1
Query: 214 GLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTI 393
GLS TTD+ LR F + + +K D T R +GF FI F++ + K + A I
Sbjct: 77 GLSAYTTDQSLRQLFAPFARL----IK-DQQTQRPKGFGFITFESEDDAQKALKALNGKI 131
Query: 394 NNKKV 408
N ++
Sbjct: 132 VNGRL 136
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 36.3 bits (80), Expect = 0.018
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = +1
Query: 172 EAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 351
E P + LFV LS +T ++ D F GE+ SI + + + G+ G+ F+ F +
Sbjct: 236 ERPPNSVEEVLFVANLSPQTKISDIFDFFNCVGEVVSIRLMVN-HEGKHVGYGFVEFASA 294
Query: 352 ESIDKVM 372
+ K +
Sbjct: 295 DETKKAL 301
Score = 29.5 bits (63), Expect = 2.0
Identities = 18/70 (25%), Positives = 31/70 (44%)
Frame = +1
Query: 406 VDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFE 585
+ K+A R +FV L E I +FF + G ++ V++ K + G F+ F
Sbjct: 117 ISVKEAAVREKTLFVANLPYETKIPNIIDFFKKVGEVVRVQL-IVNLKGKLVGCGFVEFA 175
Query: 586 SEQVVNDLLK 615
S + L+
Sbjct: 176 SVNEAEEALQ 185
Score = 28.3 bits (60), Expect = 4.7
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = +1
Query: 193 DRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 372
++ LFV L +ET + D F GE+ + + + G+ G F+ F + ++ +
Sbjct: 126 EKTLFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLK-GKLVGCGFVEFASVNEAEEAL 184
Query: 373 AA--GEHTINNK 402
GE NNK
Sbjct: 185 QKKNGECLDNNK 196
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +1
Query: 430 RHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 588
R +FV LS + I NFF + G ++ V + + T + G F+ F S
Sbjct: 357 RKKTLFVAHLSRKTEITHIINFFKDVGEVVHVRLILNHT-GKHVGCAFVEFGS 408
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 36.3 bits (80), Expect = 0.018
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Frame = +1
Query: 442 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES-EQVVNDLLKT 618
+++ L +++S++ + FS+FG ++ + D + + +GF FI FES + +L
Sbjct: 19 LYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKD-FRGESRGFAFIEFESADSAGRAMLHM 77
Query: 619 PKRTIGGK 642
R IG K
Sbjct: 78 DGRLIGQK 85
Score = 33.1 bits (72), Expect = 0.16
Identities = 21/87 (24%), Positives = 43/87 (49%)
Frame = +1
Query: 148 DSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGF 327
+ +H S+ P + L++ L + +++ L F +G++ +V G SRGF
Sbjct: 3 NDDNHGSSSCPRKFTS--LYIANLDAQVSEEMLFLMFSDFGKVIR-SVLAKDFRGESRGF 59
Query: 328 AFIVFKAPESIDKVMAAGEHTINNKKV 408
AFI F++ +S + M + + +K+
Sbjct: 60 AFIEFESADSAGRAMLHMDGRLIGQKI 86
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 36.3 bits (80), Expect = 0.018
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +1
Query: 196 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 342
R ++VG L + ++E+ D F YG + I++K P R G+AF+ F
Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPP---RPPGYAFVEF 52
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +1
Query: 106 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEI 276
T NG GGG + + P R + ++ V GL + ++L+DH G++
Sbjct: 90 TRGSFNGGGR-GGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDV 145
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 36.3 bits (80), Expect = 0.018
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +1
Query: 196 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 342
R ++VG L + ++E+ D F YG + I++K P R G+AF+ F
Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPP---RPPGYAFVEF 52
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +1
Query: 106 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEI 276
T NG GGG + + P R + ++ V GL + ++L+DH G++
Sbjct: 90 TRGSFNGGGR-GGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDV 145
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 36.3 bits (80), Expect = 0.018
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +1
Query: 196 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 342
R ++VG L + ++E+ D F YG + I++K P R G+AF+ F
Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPP---RPPGYAFVEF 52
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +1
Query: 106 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEI 276
T NG GGG + + P R + ++ V GL + ++L+DH G++
Sbjct: 90 TRGSFNGGGR-GGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDV 145
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 35.9 bits (79), Expect = 0.023
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +1
Query: 172 EAPGRDDDRKLFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVFKA 348
E P LFV L++E K L++ F A G + S V N RS G+ F+ FK
Sbjct: 181 ETPSPVPTFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKT 240
Query: 349 PESIDKVM 372
+ + +
Sbjct: 241 KKQAEAAL 248
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 35.9 bits (79), Expect = 0.023
Identities = 15/58 (25%), Positives = 30/58 (51%)
Frame = +1
Query: 415 KKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 588
KKA + V LS +++ ++ F FG ++ VE+ D+ N +G ++ F++
Sbjct: 91 KKAVQESLVLHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKA 148
Score = 34.7 bits (76), Expect = 0.054
Identities = 20/76 (26%), Positives = 35/76 (46%)
Frame = +1
Query: 202 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 381
L V LS + L++ FG +GE+ + + D RG ++ FKA +K
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEK----A 155
Query: 382 EHTINNKKVDPKKAKA 429
+ ++ ++D K KA
Sbjct: 156 QLYMDGAQIDGKVVKA 171
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 35.9 bits (79), Expect = 0.023
Identities = 15/58 (25%), Positives = 30/58 (51%)
Frame = +1
Query: 415 KKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 588
KKA + V LS +++ ++ F FG ++ VE+ D+ N +G ++ F++
Sbjct: 91 KKAVQESLVLHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKA 148
Score = 34.7 bits (76), Expect = 0.054
Identities = 20/76 (26%), Positives = 35/76 (46%)
Frame = +1
Query: 202 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 381
L V LS + L++ FG +GE+ + + D RG ++ FKA +K
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEK----A 155
Query: 382 EHTINNKKVDPKKAKA 429
+ ++ ++D K KA
Sbjct: 156 QLYMDGAQIDGKVVKA 171
>At3g21100.1 68416.m02667 RNA recognition motif (RRM)-containing
protein contains Pfam profile:PF00076 RNA recognition
motif
Length = 602
Score = 35.5 bits (78), Expect = 0.031
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = +1
Query: 463 SEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 612
S +D+++ N+F FG + +V +P+ Q++ F F+TF + V +L
Sbjct: 328 SSFTDEDVSNYFGNFGPVQDVRIPY----QQKRMFGFVTFLHSETVRIIL 373
Score = 32.7 bits (71), Expect = 0.22
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Frame = +1
Query: 232 TDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKK- 405
TD+++ ++FG +G ++ + + + R F F+ F E++ ++A G H I + +
Sbjct: 331 TDEDVSNYFGNFGPVQDVRIPYQ----QKRMFGFVTFLHSETVRIILARGNPHFICDSRV 386
Query: 406 -VDPKKAKAR 432
V P K K R
Sbjct: 387 LVKPYKEKGR 396
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 35.1 bits (77), Expect = 0.041
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +1
Query: 199 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 351
+++VG L T++EL D F A+G + S+ V P G+AF+ F+ P
Sbjct: 3 RVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRP-----PGYAFLDFEDP 48
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/70 (24%), Positives = 33/70 (47%)
Frame = +1
Query: 439 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 618
+++VG L +++ E+ + F FG + V + + G+ F+ FE + D +
Sbjct: 3 RVYVGNLDPRVTERELEDEFRAFGVVRSVWV-----ARRPPGYAFLDFEDPRDARDAI-- 55
Query: 619 PKRTIGGKGG 648
R + GK G
Sbjct: 56 --RALDGKNG 63
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 34.7 bits (76), Expect = 0.054
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Frame = +1
Query: 106 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETT-DKELRDHFGAYGEIES 282
T ++ G+ +GGG S+ +S+ P + LFV + T ++L HF YG+I +
Sbjct: 31 TKSERGGDKRSGGG-SRRSSSSMRPSKT----LFVINFDADNTRTRDLEKHFEPYGKIVN 85
Query: 283 INVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT 390
+ ++ R FAFI ++A E + + A ++
Sbjct: 86 VRIR--------RNFAFIQYEAQEDATRALDASNNS 113
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 34.7 bits (76), Expect = 0.054
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Frame = +1
Query: 106 TDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETT-DKELRDHFGAYGEIES 282
T ++ G+ +GGG S+ +S+ P + LFV + T ++L HF YG+I +
Sbjct: 72 TKSERGGDKRSGGG-SRRSSSSMRPSKT----LFVINFDADNTRTRDLEKHFEPYGKIVN 126
Query: 283 INVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT 390
+ ++ R FAFI ++A E + + A ++
Sbjct: 127 VRIR--------RNFAFIQYEAQEDATRALDASNNS 154
>At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 399
Score = 34.3 bits (75), Expect = 0.071
Identities = 17/71 (23%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +1
Query: 235 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVD 411
++++ D+F +G ++ + + + R F F+ F PE++ ++A G H + + +V
Sbjct: 169 EEDVSDYFSTFGPVQDVRIPYQ----QKRMFGFVTFMYPETVKSILAKGNPHFVCHSRVL 224
Query: 412 PKKAKARHGKI 444
K K + GK+
Sbjct: 225 VKPYKEK-GKV 234
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 34.3 bits (75), Expect = 0.071
Identities = 17/68 (25%), Positives = 31/68 (45%)
Frame = +1
Query: 442 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 621
++VG + ++ FS+FG + V+M + G+ F+ FE E+ D ++
Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFGRVKRVDM--------KSGYAFVYFEDERDAEDAIRRT 55
Query: 622 KRTIGGKG 645
T G G
Sbjct: 56 DNTTFGYG 63
Score = 27.5 bits (58), Expect = 8.1
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = +1
Query: 229 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 408
T ++++ HF YG++ ++ ++ R FAF+ F E K + + T N+K +
Sbjct: 107 TRERDMERHFEPYGKVLNVRMR--------RNFAFVQFATQEDATKAL---DSTHNSKLL 155
Query: 409 D 411
D
Sbjct: 156 D 156
>At1g72800.1 68414.m08416 nuM1-related contains similarity with nuM1
GI:1279563 from [Medicago sativa]
Length = 335
Score = 34.3 bits (75), Expect = 0.071
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = +1
Query: 205 FVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE 384
F L + L +F ++GEI + V TG S G+A+I K E +K + G
Sbjct: 241 FDASLPVDDIKSALSKYFSSFGEITRVFVPPSHGTGGSLGYAYIDLK--EGAEKALELGR 298
Query: 385 HTI 393
H +
Sbjct: 299 HDV 301
>At5g19030.3 68418.m02263 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 130
Score = 33.9 bits (74), Expect = 0.094
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +1
Query: 442 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRK 561
+FV G S +S+ ++ FSEFG + E F +KN RK
Sbjct: 60 LFVKGFSDSVSEGRLKKVFSEFGQVTN-EHYFSGSKNHRK 98
>At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing
protein low similarity to poly(A) binding protein II
from [Xenopus laevis] GI:11527140, [Mus musculus]
GI:2351846, [Bos taurus] GI:1051125; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) domain
Length = 537
Score = 33.9 bits (74), Expect = 0.094
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 268 GEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 375
G ++++ V TDP T +G AF+ F ES+ K +A
Sbjct: 469 GAVQNVIVVTDPVTRHPKGTAFVTFATKESVGKAVA 504
>At5g12440.1 68418.m01462 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 552
Score = 33.5 bits (73), Expect = 0.12
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = +1
Query: 463 SEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 612
S D+++ +FS FGT+ +V +P+ Q++ F F++F + V +L
Sbjct: 269 STFKDEDVATYFSLFGTVQDVRIPY----QQKRMFGFVSFAHPETVKVVL 314
Score = 31.9 bits (69), Expect = 0.38
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +1
Query: 235 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVD 411
D+++ +F +G ++ + + + R F F+ F PE++ V+A G H I + +V
Sbjct: 273 DEDVATYFSLFGTVQDVRIPYQ----QKRMFGFVSFAHPETVKVVLARGNPHFICDSRVL 328
Query: 412 PKKAKARHGKI 444
K K + GK+
Sbjct: 329 VKPYKEK-GKV 338
>At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing
protein
Length = 748
Score = 33.1 bits (72), Expect = 0.16
Identities = 21/59 (35%), Positives = 30/59 (50%)
Frame = +1
Query: 439 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK 615
++ VGGL + D++ FS GT+ VE F +TK + F +I F S N L K
Sbjct: 11 RLHVGGLGESVGRDDLLKIFSPMGTVDAVE--FVRTKG--RSFAYIDF-SPSSTNSLTK 64
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 33.1 bits (72), Expect = 0.16
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +1
Query: 220 SWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 354
S T++ LRD F GEI + +K + G+SR FA+I F+ +
Sbjct: 11 SKHVTEERLRDVFSRKGEIADVKLKR-KSDGKSRQFAYIGFRTEQ 54
>At2g42240.1 68415.m05228 RNA recognition motif (RRM)-containing
protein similar to RNA-binding protein (Hermes) from
{Gallus gallus} SP|Q9W6I1, {Xenopus laevis} SP|Q9YGP5,
{Mus musculus} SP|Q9WVB0; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 124
Score = 33.1 bits (72), Expect = 0.16
Identities = 24/84 (28%), Positives = 40/84 (47%)
Frame = +1
Query: 184 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 363
RD+ R LFV GL + +E+ + F + E+ ++++ ++ FAF VF +S
Sbjct: 31 RDEVRTLFVAGLPEDVKPREIYNLFREFPGYETSHLRSSDG---AKPFAFAVFSDLQSAV 87
Query: 364 KVMAAGEHTINNKKVDPKKAKARH 435
VM H +N D +K H
Sbjct: 88 AVM----HALNGMVFDLEKHSTLH 107
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 32.7 bits (71), Expect = 0.22
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Frame = +1
Query: 184 RDDDR----KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 351
R DDR +L+VG LS T ++L F YG + +++K D +AF+ F P
Sbjct: 3 RYDDRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD--------YAFVEFSDP 54
Query: 352 ESID 363
D
Sbjct: 55 RDAD 58
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 439 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFD 540
+++VG LSS ++ FS +G + +V+M D
Sbjct: 12 RLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD 45
>At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 427
Score = 32.7 bits (71), Expect = 0.22
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Frame = +1
Query: 400 KKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFC--F 573
KK D K + IFV L ++ F +FG I E + ++ C F
Sbjct: 268 KKNDQKVIEVPGTSIFVANLPLNAMPPQLFELFKDFGPIKENGIQVRSSRGNANPVCFGF 327
Query: 574 ITFESEQVVNDLLKTPKRT 630
I+FE+ V +L+ K T
Sbjct: 328 ISFETVASVQSVLQAAKNT 346
>At5g16840.1 68418.m01973 RNA recognition motif (RRM)-containing
protein predicted proteins - Arabidopsis thaliana
Length = 259
Score = 32.3 bits (70), Expect = 0.29
Identities = 17/71 (23%), Positives = 39/71 (54%)
Frame = +1
Query: 196 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMA 375
R + VG LS T+ ++++ F GE+ESI+++++ ++ A++ FK + + +
Sbjct: 6 RSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQSNEHS------AYVTFKETQGAETAVL 59
Query: 376 AGEHTINNKKV 408
+I ++ V
Sbjct: 60 LSGASIADQSV 70
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 32.3 bits (70), Expect = 0.29
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +1
Query: 199 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 345
+++VG L T++EL D F ++G I S+ V P G+AF+ F+
Sbjct: 3 RVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRP-----PGYAFLDFE 46
Score = 31.1 bits (67), Expect = 0.66
Identities = 18/70 (25%), Positives = 33/70 (47%)
Frame = +1
Query: 439 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 618
+++VG L +++ E+ + F FG I V + + G+ F+ FE + D +
Sbjct: 3 RVYVGNLDPRVTERELEDEFRSFGVIRSVWV-----ARRPPGYAFLDFEDSRDARDAI-- 55
Query: 619 PKRTIGGKGG 648
R + GK G
Sbjct: 56 --REVDGKNG 63
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 32.3 bits (70), Expect = 0.29
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +1
Query: 442 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 594
+FV L+ D+++ FS FGT++ ++ D + FI FE+++
Sbjct: 245 LFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKE 295
>At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM), PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 540
Score = 31.9 bits (69), Expect = 0.38
Identities = 16/71 (22%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +1
Query: 235 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGE-HTINNKKVD 411
++++ ++F +G ++ + + + R F F+ F PE++ ++A G H + + +V
Sbjct: 272 EEDVSNYFSTFGPVQDVRIPYQ----QKRMFGFVTFVYPETVKSILAKGNPHFVCDSRVL 327
Query: 412 PKKAKARHGKI 444
K K + GK+
Sbjct: 328 VKPYKEK-GKV 337
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 31.9 bits (69), Expect = 0.38
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Frame = +1
Query: 184 RDDDR----KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 351
R DDR +L+VG LS T ++L F YG + +++K D +AF+ F P
Sbjct: 3 RYDDRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD--------YAFVEFGDP 54
Query: 352 ESID 363
D
Sbjct: 55 RDAD 58
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 439 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFD 540
+++VG LSS ++ FS +G + +V+M D
Sbjct: 12 RLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD 45
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 31.9 bits (69), Expect = 0.38
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +1
Query: 199 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF-KAPESIDKVMA 375
+++VG L T++EL D F A+G + ++ V P G+AF+ F +++D + A
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRP-----PGYAFLEFDDERDALDAISA 57
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/66 (22%), Positives = 31/66 (46%)
Frame = +1
Query: 439 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 618
+++VG L +++ E+ + F FG + V + + G+ F+ F+ E+ D +
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWV-----ARRPPGYAFLEFDDERDALDAISA 57
Query: 619 PKRTIG 636
R G
Sbjct: 58 LDRKNG 63
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 31.9 bits (69), Expect = 0.38
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +1
Query: 199 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF-KAPESIDKVMA 375
+++VG L T++EL D F A+G + ++ V P G+AF+ F +++D + A
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRP-----PGYAFLEFDDERDALDAISA 57
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/66 (22%), Positives = 31/66 (46%)
Frame = +1
Query: 439 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 618
+++VG L +++ E+ + F FG + V + + G+ F+ F+ E+ D +
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWV-----ARRPPGYAFLEFDDERDALDAISA 57
Query: 619 PKRTIG 636
R G
Sbjct: 58 LDRKNG 63
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 31.5 bits (68), Expect = 0.50
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = +1
Query: 133 ENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETT-DKELRDHFGAYGEIESINVKTDPNT 309
+ GG + + G + LFV + T ++L HF YG+I ++ ++
Sbjct: 75 DRGGAGRSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIR----- 129
Query: 310 GRSRGFAFIVFKAPESIDKVMAA 378
R FAFI ++A E + + A
Sbjct: 130 ---RNFAFIQYEAQEDATRALDA 149
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 31.5 bits (68), Expect = 0.50
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = +1
Query: 133 ENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETT-DKELRDHFGAYGEIESINVKTDPNT 309
+ GG + + G + LFV + T ++L HF YG+I ++ ++
Sbjct: 75 DRGGAGRSGGSRRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIR----- 129
Query: 310 GRSRGFAFIVFKAPESIDKVMAA 378
R FAFI ++A E + + A
Sbjct: 130 ---RNFAFIQYEAQEDATRALDA 149
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 31.5 bits (68), Expect = 0.50
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +1
Query: 196 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 345
R +FVG +ET +L F YG ++ +++K+ G+AF+ F+
Sbjct: 2 RPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKS--------GYAFVYFE 43
Score = 27.9 bits (59), Expect = 6.1
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Frame = +1
Query: 142 GGDSQDHNSAEAPGRDDDRK-LFVGGLS-WETTDKELRDHFGAYGEIESINVKTDPNTGR 315
G + A+AP K LFV T + ++ HF YG++ ++ ++
Sbjct: 74 GERGRPRGDAKAPSNLKPTKTLFVINFDPIRTKEHDIEKHFEPYGKVTNVRIR------- 126
Query: 316 SRGFAFIVFKAPESIDKVMAAGEHT 390
R F+F+ F+ E K + A + +
Sbjct: 127 -RNFSFVQFETQEDATKALEATQRS 150
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 31.5 bits (68), Expect = 0.50
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +1
Query: 442 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 582
+ V L + +++R F +FG + ++ +P D +GF F+ F
Sbjct: 38 LLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQF 84
>At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
gb:D86122
Length = 785
Score = 31.1 bits (67), Expect = 0.66
Identities = 23/80 (28%), Positives = 38/80 (47%)
Frame = +1
Query: 202 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 381
L V L+ ++++L + FG YGEI+ I + PN R F+ F S D + A
Sbjct: 224 LVVFNLAPSVSNRDLENIFGVYGEIKEI--RETPN---KRHHKFVEFFDVRSADAALKA- 277
Query: 382 EHTINNKKVDPKKAKARHGK 441
+N ++ K+ K H +
Sbjct: 278 ---LNRTEIAGKRIKLEHSR 294
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 31.1 bits (67), Expect = 0.66
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +1
Query: 442 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 582
+ V L + +++R F +FG + ++ +P D +GF FI F
Sbjct: 39 LLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQF 85
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 30.7 bits (66), Expect = 0.87
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +1
Query: 196 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 345
R ++VG L + + E+ D F YG I I +K P R + F+ F+
Sbjct: 7 RSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPP---RPPCYCFVEFE 53
>At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing
protein
Length = 90
Score = 30.7 bits (66), Expect = 0.87
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +1
Query: 445 FVGGLSSEISDDEIRNFFSEFGTILEVEMPF 537
+VG L S+ +++++N FS+FG ++ + F
Sbjct: 11 YVGNLESDTEENDLKNAFSQFGDVIHSNVRF 41
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/68 (25%), Positives = 32/68 (47%)
Frame = +1
Query: 379 GEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQR 558
GE NN + + + + VG +SS + D E++ F +FG I + T +
Sbjct: 198 GERGGNNSVGELNRGEIPSRTLLVGNISSNVEDYELKVLFEQFGDIQALH-----TACKN 252
Query: 559 KGFCFITF 582
+GF +++
Sbjct: 253 RGFIMVSY 260
>At5g04210.1 68418.m00409 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 193
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = +1
Query: 235 DKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 372
++++RDHF YGEIESI + P+ G AF+ + + +K M
Sbjct: 91 EQDIRDHFCPYGEIESIVI--FPHRGGGT-CAFLTYTTRLAAEKAM 133
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/53 (37%), Positives = 29/53 (54%)
Frame = +1
Query: 196 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPE 354
R L+VG L ++EL D F +GE+ES+ + GRS +AF+ F E
Sbjct: 23 RHLWVGNLPHGILERELADRFLRFGELESLAFQ----PGRS--YAFVNFNHDE 69
>At2g33440.1 68415.m04099 splicing factor family protein similar to
Splicing factor U2AF 65 kDa subunit (U2 snRNP auxiliary
factor large subunit) {Homo sapiens} SP|P26368, {Mus
musculus} SP|P26369; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 247
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +1
Query: 439 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGF 567
KIF+GG S IS + + S FG + + NQR F
Sbjct: 41 KIFIGGFSKAISSEMLMEIVSVFGPLKAYRFVSNNDLNQRCAF 83
>At1g67950.3 68414.m07762 RNA recognition motif (RRM)-containing
protein
Length = 279
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/80 (22%), Positives = 37/80 (46%)
Frame = +1
Query: 355 SIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMP 534
S+ + T +N +D + + + + +S +S +++ FFS G I VEM
Sbjct: 2 SVTAAFIDSDQTQHNILMDSQSTVSGVKTVKISNVSLIVSKKDVKEFFSFSGDIQYVEM- 60
Query: 535 FDKTKNQRKGFCFITFESEQ 594
+++ Q ++TF+ Q
Sbjct: 61 --RSETQESQVAYVTFKDSQ 78
>At1g67950.1 68414.m07761 RNA recognition motif (RRM)-containing
protein
Length = 278
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/80 (22%), Positives = 37/80 (46%)
Frame = +1
Query: 355 SIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMP 534
S+ + T +N +D + + + + +S +S +++ FFS G I VEM
Sbjct: 2 SVTAAFIDSDQTQHNILMDSQSTVSGVKTVKISNVSLIVSKKDVKEFFSFSGDIQYVEM- 60
Query: 535 FDKTKNQRKGFCFITFESEQ 594
+++ Q ++TF+ Q
Sbjct: 61 --RSETQESQVAYVTFKDSQ 78
>At4g32720.1 68417.m04657 RNA recognition motif (RRM)-containing
protein RNA-binding protein LAH1, Saccharomyces
cerevisiae, PIR2:B48600; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 433
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/53 (22%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +1
Query: 460 SSEISDDEIRNFFSEFGTILEVEMPFDKTKNQ-RKGFCFITFESEQVVNDLLK 615
S ++ +++ +FFS++G + V MP +++ G + F +E+ +++K
Sbjct: 124 SYDVKREDVESFFSQYGKVNSVRMPRHVAESRIFSGVALVEFPTEEDAQNVMK 176
>At4g16810.1 68417.m02538 expressed protein similar to vernalization
2 protein [Arabidopsis thaliana] GI:16945788, embryonic
flower 2 [Arabidopsis thaliana] GI:14276050,
fertilization-independent seed 2 protein [Arabidopsis
thaliana] GI:4185499
Length = 623
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = +2
Query: 383 NTPSTTRK*TQRRLKHDMGRFLSEDSAVKSQM---MKSETSSVNLELS*KWRCPLTKQR 550
NT + + + LK G +E+ K ++ M ++ SSV E++ KWRCP +R
Sbjct: 547 NTEVLVKCSSSKELKTKAGEDNTEEREKKRRVLGEMSNQLSSVAKEIAGKWRCPQKNKR 605
>At2g39260.1 68415.m04821 MIF4G domain-containing protein similar to
hUPF2 [Homo sapiens] GI:12232320; contains Pfam profile
PF02854: MIF4G domain
Length = 1186
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = +1
Query: 121 NGNAENGG--GDSQDHNSAEAPGRDDDR 198
+GN E G GD D++ + PG DDD+
Sbjct: 962 DGNHERGSESGDGDDYDDGDGPGSDDDK 989
>At3g50670.2 68416.m05543 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 204
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +1
Query: 160 HNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSR 321
+N A G D + LFV L++E+++ +++ F +YG I+ + G R
Sbjct: 127 NNDPNATG-DPYKTLFVSRLNYESSESKIKREFESYGPIKRVGYSEHSLAGSVR 179
>At3g18810.1 68416.m02389 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 700
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 79 NDNFAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDR 198
NDN + +N N N NGGG ++ S P R+ DR
Sbjct: 119 NDNNGNNNNGNNNDNNNQNNGGG--SNNRSPPPPSRNSDR 156
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 76 NNDNFAQDITTDNQLNGNAENGGGDSQDHNS 168
NN N D +N N N +N G+++D+N+
Sbjct: 76 NNGNNNNDNNNNNNGNNNNDNNNGNNKDNNN 106
>At1g73490.1 68414.m08508 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 259
Score = 29.5 bits (63), Expect = 2.0
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Frame = +1
Query: 193 DRKLFVGGLSWETTDKELR----DHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESI 360
D LFV G E++ +HF + G++ I V +TG S G+AFI K
Sbjct: 116 DSALFVQGFDTSHPRHEIKTALWNHFSSCGKVYLIYVPIACSTGASVGYAFIDMK--NET 173
Query: 361 DKVMAAGEHTINNKKVD 411
+ G H + +K+D
Sbjct: 174 KGLTLNGSH-LGGRKID 189
>At1g67950.2 68414.m07760 RNA recognition motif (RRM)-containing
protein
Length = 279
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/71 (23%), Positives = 35/71 (49%)
Frame = +1
Query: 382 EHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRK 561
+ T +N +D + + + + +S +S +++ FFS G I VEM +++ Q
Sbjct: 12 DQTQHNILMDSQSTVSGVKTVKISNVSLIVSKKDVKEFFSFSGDIQYVEM---RSETQES 68
Query: 562 GFCFITFESEQ 594
++TF+ Q
Sbjct: 69 QVAYVTFKDSQ 79
>At2g47390.1 68415.m05915 expressed protein
Length = 961
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +1
Query: 121 NGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRD 252
+G AE+GGG S SA A +DD G + E+RD
Sbjct: 78 SGGAEDGGGTSNGSLSASATATEDDELAI--GTGYRLPPPEIRD 119
>At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 428
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/63 (25%), Positives = 30/63 (47%)
Frame = +1
Query: 442 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 621
IFV L + + +++ F FG I + + + + F F+TF S + V +L+
Sbjct: 279 IFVANLLMDATPEQLNETFKGFGAITKDGIQVRSYRLKGNCFGFVTFASAEAVKLVLQAH 338
Query: 622 KRT 630
K +
Sbjct: 339 KES 341
>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +1
Query: 169 AEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVK 294
A+ D+ ++++ L + T EL+D FG G++ I K
Sbjct: 271 ADCDDNCDNARIYISNLPPDVTTDELKDLFGGIGQVGRIKQK 312
>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +1
Query: 169 AEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVK 294
A+ D+ ++++ L + T EL+D FG G++ I K
Sbjct: 271 ADCDDNCDNARIYISNLPPDVTTDELKDLFGGIGQVGRIKQK 312
>At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 422
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/71 (19%), Positives = 33/71 (46%)
Frame = +1
Query: 418 KAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQV 597
K +A+ IFV L + + +++ F FG I + + ++ F+ FE+ +
Sbjct: 269 KPQAQGSSIFVANLPMDATIEQLYETFKSFGAIRKDGIQVRSYPEKKNCIGFVAFENGEA 328
Query: 598 VNDLLKTPKRT 630
V ++ + + +
Sbjct: 329 VKNVFQAHRES 339
>At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 460
Score = 28.3 bits (60), Expect = 4.7
Identities = 17/67 (25%), Positives = 27/67 (40%)
Frame = +1
Query: 442 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 621
I+V L + + ++ F FG I + K Q F F+ FE+ L+
Sbjct: 295 IYVRNLPFDSTPTQLEEVFKNFGAIKHEGIQVRSNKQQGFCFGFVEFETSSGKQSALEAS 354
Query: 622 KRTIGGK 642
TIG +
Sbjct: 355 PVTIGDR 361
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/40 (25%), Positives = 24/40 (60%)
Frame = +1
Query: 442 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRK 561
++VG LS ++ ++ + F FG I V++ + +T +++
Sbjct: 181 LYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTDEEKR 220
>At5g03480.1 68418.m00304 expressed protein ; expression supported
by MPSS
Length = 321
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 244 LRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 372
L HF + GEI + V TD G + AF+ + + DK +
Sbjct: 133 LEKHFDSCGEIRHVYVPTDYERGVLKSVAFLRIEGEGAEDKAL 175
>At4g08750.1 68417.m01443 RNA recognition motif (RRM)-containing
protein contains Pfam domain PF00076: RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 461
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 244 LRDHFGAYGEIESINVKTDPNTGRSRGF 327
L HF GEI + V +P+TG +GF
Sbjct: 364 LSKHFSVCGEITRVFVPRNPSTGAIKGF 391
>At1g04950.2 68414.m00493 TATA box-binding protein-associated factor
(TAF) family protein contains Pfam profile: PF02969 TATA
box binding protein associated factor
Length = 549
Score = 28.3 bits (60), Expect = 4.7
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Frame = +1
Query: 388 TINNKKVDPKKAKARH-GKI-FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRK 561
T+ N +DPKKA +H G I + L + I + + ++LE E+ +K KNQ K
Sbjct: 310 TLVNALLDPKKALTQHYGAIQGLAALGHTVVRLLILSNLEPYLSLLEPELNAEKQKNQMK 369
Query: 562 GFCFITFESEQVVNDLLKTPKRTIGGK 642
+E+ +V LL+ I G+
Sbjct: 370 -----IYEAWRVYGALLRAAGLCIHGR 391
>At1g04950.1 68414.m00492 TATA box-binding protein-associated factor
(TAF) family protein contains Pfam profile: PF02969 TATA
box binding protein associated factor
Length = 549
Score = 28.3 bits (60), Expect = 4.7
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Frame = +1
Query: 388 TINNKKVDPKKAKARH-GKI-FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRK 561
T+ N +DPKKA +H G I + L + I + + ++LE E+ +K KNQ K
Sbjct: 310 TLVNALLDPKKALTQHYGAIQGLAALGHTVVRLLILSNLEPYLSLLEPELNAEKQKNQMK 369
Query: 562 GFCFITFESEQVVNDLLKTPKRTIGGK 642
+E+ +V LL+ I G+
Sbjct: 370 -----IYEAWRVYGALLRAAGLCIHGR 391
>At5g22830.1 68418.m02669 magnesium transporter CorA-like family
protein weak similarity to SP|Q01926 RNA splicing
protein MRS2, mitochondrial precursor {Saccharomyces
cerevisiae}; contains Pfam profile PF01544: CorA-like
Mg2+ transporter protein; supporting cDNA
gi|12007446|gb|AF322255.1|AF322255
Length = 459
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +1
Query: 73 ANNDNFAQDITTDNQ-LNGNAENGGGDSQDHNSAEAPGRDDDRKL 204
A + A+D D + LN + ++ G DS + GRDD +K+
Sbjct: 65 AKSPTTAEDFVGDYESLNVSDDDDGSDSNSSDGDNGGGRDDSKKI 109
>At4g24420.1 68417.m03501 RNA recognition motif (RRM)-containing
protein RRM, RNA recognition motif
Length = 87
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = +1
Query: 244 LRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 408
L +HF + G I ++ + P T G A I ++ +KVM + +K+
Sbjct: 5 LTNHFKSCGVIAMVSFRRHPETDVVNGLATITMMGNDADEKVMLLNGSELGGRKL 59
>At5g27640.1 68418.m03311 eukaryotic translation initiation factor 3
subunit 9 / eIF-3 eta / eIF3b (TIF3B1) nearly identical
to SP|Q9C5Z1 Eukaryotic translation initiation factor 3
subunit 9 (eIF-3 eta) (eIF3 p110) (eIF3b) {Arabidopsis
thaliana}
Length = 712
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +1
Query: 484 IRNFFSEFGTILE--VEMPFDKTKNQRKGFCFITFESEQ 594
++ +++ G I E + MP D G+CFI F + Q
Sbjct: 78 VKKIYNQLGVIKENGLWMPVDPDTKMTLGYCFIEFNTPQ 116
>At5g25780.1 68418.m03060 eukaryotic translation initiation factor 3
subunit 9, putative / eIF-3 eta, putative / eIF3b,
putative nearly identical to SP|Q9C5Z1 Eukaryotic
translation initiation factor 3 subunit 9 (eIF-3 eta)
(eIF3 p110) (eIF3b) {Arabidopsis thaliana}
Length = 714
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +1
Query: 484 IRNFFSEFGTILE--VEMPFDKTKNQRKGFCFITFESEQ 594
++ +++ G I E + MP D G+CFI F + Q
Sbjct: 79 VKKIYNQLGVIKENGLLMPVDPDTKMTLGYCFIEFNTPQ 117
>At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing
protein KIAA0332 gene, Homo sapiens, EMBL:HSAB2330
Length = 947
Score = 27.5 bits (58), Expect = 8.1
Identities = 10/40 (25%), Positives = 25/40 (62%)
Frame = +1
Query: 442 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRK 561
++V LSS++ ++ + F FG I V++ + +T+ +++
Sbjct: 189 LYVVNLSSKVDENFLLRTFGRFGPIASVKIMWPRTEEEKR 228
>At4g17720.1 68417.m02646 RNA recognition motif (RRM)-containing
protein
Length = 313
Score = 27.5 bits (58), Expect = 8.1
Identities = 17/67 (25%), Positives = 34/67 (50%)
Frame = +1
Query: 208 VGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEH 387
V +S TD++L++ F G+I + ++T T R++ A++ FK + + +
Sbjct: 8 VSNVSLGATDRDLKEFFSFSGDI--LYLETQSETERTK-LAYVTFKDLQGAETAVLLSGA 64
Query: 388 TINNKKV 408
TI + V
Sbjct: 65 TIVDSSV 71
>At3g21215.1 68416.m02681 RNA-binding protein, putative contains RNA
recognition motif, Pfam:PF00076; contains AT-AC splice
sites at intron 8
Length = 339
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +1
Query: 442 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFE 585
+F+G L I+++E+R+ S ++++ + +R CFI FE
Sbjct: 235 LFIGNLGENINEEELRSLLSAQPGFKQMKI----LRQERHTVCFIEFE 278
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 27.5 bits (58), Expect = 8.1
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = +1
Query: 229 TTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKV 408
T ++++ HF YG++ ++ ++ R FAF+ F E K + + T N+K +
Sbjct: 81 TRERDMERHFEPYGKVLNVRMR--------RNFAFVQFATQEDATKAL---DSTHNSKLL 129
Query: 409 D 411
D
Sbjct: 130 D 130
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.137 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,516,953
Number of Sequences: 28952
Number of extensions: 309100
Number of successful extensions: 1550
Number of sequences better than 10.0: 252
Number of HSP's better than 10.0 without gapping: 1138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1486
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -