BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ceN-0879 (627 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 09_04_0246 - 16024454-16024529,16024635-16024720,16024805-160248... 29 2.3 >09_04_0246 - 16024454-16024529,16024635-16024720,16024805-16024894, 16025349-16025435,16026112-16026229,16026852-16026982, 16027619-16027909,16028000-16028124,16028209-16028334, 16028452-16028487,16028599-16028902 Length = 489 Score = 29.5 bits (63), Expect = 2.3 Identities = 14/40 (35%), Positives = 20/40 (50%) Frame = +3 Query: 123 VRKGKSVFNEILVQRKVMHQTYLMCSCYLTSISSLRLSRN 242 +RK K + + L R+ +HQ YL +L RL RN Sbjct: 58 IRKAKEIVDNALKIREELHQKYLRAEPWLKEQERQRLERN 97 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,214,827 Number of Sequences: 37544 Number of extensions: 226726 Number of successful extensions: 296 Number of sequences better than 10.0: 1 Number of HSP's better than 10.0 without gapping: 292 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 296 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1525730988 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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