Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0879
         (627 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024817-13|AAL00869.1|  187|Caenorhabditis elegans Hypothetical...    28   4.8  
Z19153-1|CAA79546.1|  374|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>AC024817-13|AAL00869.1|  187|Caenorhabditis elegans Hypothetical
           protein Y54G2A.32 protein.
          Length = 187

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 521 NVDKNGRQSKSFTAVTAWMKRNWKS 595
           NV+K    +K+ TAV  W+ +NWK+
Sbjct: 45  NVNKQTTIAKAKTAVKNWVPKNWKA 69


>Z19153-1|CAA79546.1|  374|Caenorhabditis elegans Hypothetical
           protein C38C10.1 protein.
          Length = 374

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 57  IFFKYLPTNISVFCA*CVVLFYVRKGKSVFNEILVQRKVMH 179
           IF+ Y+ T + V  A  +++     G SV   I+ Q KVMH
Sbjct: 3   IFYLYVATQVFVAIAFVLLMATAIIGNSVVMWIIYQHKVMH 43


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,111,258
Number of Sequences: 27780
Number of extensions: 264606
Number of successful extensions: 444
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)