Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0877
(650 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 106 2e-23
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 74 9e-14
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 70 2e-12
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 69 3e-12
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 3e-11
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 60 1e-09
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 5e-09
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 58 5e-09
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 3e-08
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 49 3e-06
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 49 4e-06
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 7e-06
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057) 43 2e-04
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 42 6e-04
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 41 0.001
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 41 0.001
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 41 0.001
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 39 0.003
SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07) 38 0.007
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.009
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27) 35 0.066
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.47
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.62
SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 31 1.1
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 30 1.4
SB_3046| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_6554| Best HMM Match : Isy1 (HMM E-Value=0) 29 3.3
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 29 4.3
SB_55554| Best HMM Match : AAA (HMM E-Value=0.022) 29 4.3
SB_8125| Best HMM Match : MFS_1 (HMM E-Value=3.2e-07) 28 7.6
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 106 bits (254), Expect = 2e-23
Identities = 48/129 (37%), Positives = 78/129 (60%)
Frame = +2
Query: 236 PDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPD 415
P+ + +PFNKNFY+ HP + K+S E+++ R K + VSG P F F +
Sbjct: 467 PEKSKIDYKPFNKNFYEEHPEITKQSKQEIDDLRKKMGIKVSGAMPARPCISFAHFGFDE 526
Query: 416 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTFGLHFASNLCTLNNQPPI 595
+ ++ + Y +PT IQ Q PIA+SG++++G+A+TGSGKT + + L + +QP +
Sbjct: 527 QMMASIRKLEYTQPTQIQCQALPIALSGRDIIGIAKTGSGKTAAFLWPA-LVHIMDQPEL 585
Query: 596 RRGDGPELL 622
+ GDGP +L
Sbjct: 586 QVGDGPIVL 594
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 74.1 bits (174), Expect = 9e-14
Identities = 41/120 (34%), Positives = 65/120 (54%), Gaps = 1/120 (0%)
Frame = +2
Query: 266 FNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 445
F ++YD + V + S V+E R K+ + + G + PI+ F + N P + +
Sbjct: 32 FMWSYYDENEKVSRLSDEVVDEIRWKNGIHIEGEDCPKPIESFHDLNLPPELSTYLAKKN 91
Query: 446 YKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTFGLHFASNLC-TLNNQPPIRRGDGPELL 622
++ PTPIQ Q MSG++++G+A+TGSGKT L ++ LC L + P GD P L
Sbjct: 92 FQVPTPIQMQSLSCVMSGRDIIGLAETGSGKT--LAYSLPLCMLLRTKAPSNPGDTPVAL 149
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 69.7 bits (163), Expect = 2e-12
Identities = 29/70 (41%), Positives = 46/70 (65%)
Frame = +2
Query: 332 YRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 511
+R ++ G + PI+ ++EA PD + + V +GYK+PTPIQ Q PI + ++++
Sbjct: 83 FREDFNISTKGGRIPFPIRKWKEAQIPDSILEIVDKLGYKDPTPIQRQAIPIGLQNRDII 142
Query: 512 GVAQTGSGKT 541
GVA+TGSGKT
Sbjct: 143 GVAETGSGKT 152
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 69.3 bits (162), Expect = 3e-12
Identities = 31/86 (36%), Positives = 51/86 (59%)
Frame = +2
Query: 281 YDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 460
Y HPT+ + +V++ R+K E+ V G V +P+ F +F + + + + GY PT
Sbjct: 161 YKEHPTIAALTAEQVKQLRDKMEIKVKGEHVVSPVLEFFHCSFNESLSKNLSNHGYHSPT 220
Query: 461 PIQAQGWPIAMSGKNLVGVAQTGSGK 538
PIQ Q P+ +SG++++ A TGSGK
Sbjct: 221 PIQMQVLPVLLSGRDVMVCASTGSGK 246
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 65.7 bits (153), Expect = 3e-11
Identities = 32/103 (31%), Positives = 56/103 (54%), Gaps = 1/103 (0%)
Frame = +2
Query: 221 QNMRRPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFE 397
+ ++ D +V QPF K+FY P + K +P E +E+R E + V G P++ +
Sbjct: 49 EELQPVDHKTVVYQPFRKDFYVEVPELAKMTPEETDEFRLSLENIHVRGKNAPKPVKTWA 108
Query: 398 EANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQT 526
+ + +K Y++PTPIQAQ P+ MSG++++ + T
Sbjct: 109 QTGVQLKILDVLKKNSYEKPTPIQAQAIPVIMSGRDMIAIVMT 151
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 60.5 bits (140), Expect = 1e-09
Identities = 27/56 (48%), Positives = 36/56 (64%)
Frame = +2
Query: 308 RSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 475
R +EV+ YR ++TV+G V P+ FEE+ FPDY+Q K G+ EPT IQAQ
Sbjct: 57 RGQHEVDAYRRSKDLTVNGRNVPKPVTTFEESAFPDYIQSYFKREGFTEPTMIQAQ 112
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 58.4 bits (135), Expect = 5e-09
Identities = 31/72 (43%), Positives = 44/72 (61%)
Frame = +2
Query: 326 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 505
E+Y ++ EV VSG I FEEAN + V+ YK+PTP+Q PI ++G++
Sbjct: 692 EKY-DQIEVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRD 750
Query: 506 LVGVAQTGSGKT 541
++ AQTGSGKT
Sbjct: 751 VMACAQTGSGKT 762
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 58.4 bits (135), Expect = 5e-09
Identities = 31/72 (43%), Positives = 44/72 (61%)
Frame = +2
Query: 326 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 505
E+Y ++ EV VSG I FEEAN + V+ YK+PTP+Q PI ++G++
Sbjct: 115 EKY-DQIEVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGRD 173
Query: 506 LVGVAQTGSGKT 541
++ AQTGSGKT
Sbjct: 174 VMACAQTGSGKT 185
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 55.6 bits (128), Expect = 3e-08
Identities = 26/62 (41%), Positives = 35/62 (56%)
Frame = +2
Query: 356 VSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSG 535
VSG I F E F + + + GY+ PTP+Q PI M+G++L+ AQTGSG
Sbjct: 469 VSGENQPPKITSFNELPFGEQLMANISRAGYRRPTPVQKAALPIVMAGRDLMACAQTGSG 528
Query: 536 KT 541
KT
Sbjct: 529 KT 530
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 49.2 bits (112), Expect = 3e-06
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Frame = +2
Query: 320 EVEEYRNKHEVTVSGVEVHNPIQYF----EEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 487
++ +R++ + V G +V +P++ F E FPDY+ V+ GY PTPIQ Q P+
Sbjct: 137 KINLFRHEQHIYVKGADVPDPVETFSQLIERYGFPDYIIHNVQERGYTTPTPIQMQATPL 196
Query: 488 AMSGKNLVG 514
G G
Sbjct: 197 MAHGPKKSG 205
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 48.8 bits (111), Expect = 4e-06
Identities = 21/53 (39%), Positives = 33/53 (62%)
Frame = +2
Query: 383 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKT 541
++ F + G+ G+ PT IQ QG P+A+SG++++G A+TGSGKT
Sbjct: 49 VEKFSDFPISKRTLDGLMKAGFVTPTDIQKQGIPVALSGRDVLGAAKTGSGKT 101
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 48.0 bits (109), Expect = 7e-06
Identities = 22/53 (41%), Positives = 31/53 (58%)
Frame = +2
Query: 383 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKT 541
I FE+ + + + V GYK+PTP+Q PI ++L+ AQTGSGKT
Sbjct: 874 ILQFEDVDLGEILLHNVGLAGYKKPTPVQKYAIPIVKGKRDLMACAQTGSGKT 926
>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
Length = 96
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = +2
Query: 425 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKT 541
+ V +G+ PTPIQA P+A+ GK++ A TG+GKT
Sbjct: 23 RAVNELGFLHPTPIQASTIPVALMGKDVCACAATGTGKT 61
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 41.5 bits (93), Expect = 6e-04
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +2
Query: 440 MGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKT--FGLHFASNLC 571
MG K+PT IQ P + G++ +G A+TGSGKT F L LC
Sbjct: 25 MGIKKPTEIQLNCVPPILQGRDCIGCAKTGSGKTAAFALPILQKLC 70
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Frame = +2
Query: 341 KHEVTVSGVEVHNPI---QYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK--N 505
KHEV V + +P+ + FEE +++GV MG+ +P+ IQ P+ ++ N
Sbjct: 85 KHEVEVLRSDPSSPLYSAKSFEELPLSANLRRGVYDMGFNKPSKIQETALPMLLADPPVN 144
Query: 506 LVGVAQTGSGKT 541
++ +Q+G+GKT
Sbjct: 145 MIAQSQSGTGKT 156
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 40.7 bits (91), Expect = 0.001
Identities = 16/50 (32%), Positives = 32/50 (64%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKT 541
FE+ + G+ G+ +P+PIQ + P+A++G++++ A+ G+GKT
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGKT 98
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 40.7 bits (91), Expect = 0.001
Identities = 16/50 (32%), Positives = 32/50 (64%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKT 541
FE+ + G+ G+ +P+PIQ + P+A++G++++ A+ G+GKT
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGKT 98
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = +2
Query: 425 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKT 541
QG+K MG+ T IQ + + G++L+G A+TGSGKT
Sbjct: 585 QGIKDMGFTTMTEIQHKSIAPLLKGRDLLGAAKTGSGKT 623
>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
Length = 985
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Frame = +2
Query: 425 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKT--FGLHFASNLCTLNN 583
+G+ G+++P+PIQ + P+ G +L+ A++G+GKT F + N+ T +N
Sbjct: 26 RGLNEAGFEKPSPIQLKAIPLGRCGLDLIAQAKSGTGKTCVFSVIALENVITESN 80
>SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07)
Length = 456
Score = 37.9 bits (84), Expect = 0.007
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = +2
Query: 347 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQT 526
EV + G P + F +Y + +G PT +Q WP + G+++ GVA
Sbjct: 178 EVLIQGESAPRPFLTMNNSTFYEYGPR----LGVTVPTSLQKHMWPSLLRGRDVAGVAIE 233
Query: 527 GSGK 538
GSGK
Sbjct: 234 GSGK 237
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 37.5 bits (83), Expect = 0.009
Identities = 20/50 (40%), Positives = 33/50 (66%), Gaps = 3/50 (6%)
Frame = +2
Query: 410 PDYVQQGVKTMGYKEPTPIQAQGWPIAMS-GKNLVGVAQTGSGKT--FGL 550
PD + + + G+ +PTPIQ+ P A+ ++++G A+TGSGKT FG+
Sbjct: 139 PD-ILRALGDQGFSKPTPIQSLSIPPALLYHRDIIGAAETGSGKTLAFGI 187
>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
Length = 559
Score = 34.7 bits (76), Expect = 0.066
Identities = 17/44 (38%), Positives = 28/44 (63%)
Frame = +2
Query: 410 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKT 541
P V++ +K MG +P PIQ + P S K+L+ ++TG+GK+
Sbjct: 169 PKLVEK-LKKMGITKPVPIQEKALPSVFSHKSLLIKSETGTGKS 211
>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 31.9 bits (69), Expect = 0.47
Identities = 12/36 (33%), Positives = 25/36 (69%)
Frame = +2
Query: 434 KTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKT 541
+T G+++P+ IQ + + G++++ AQ+G+GKT
Sbjct: 13 ETEGFEKPSAIQQRAIKPILKGRDVIAQAQSGTGKT 48
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 31.5 bits (68), Expect = 0.62
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = +2
Query: 482 PIAMSGKNLVGVAQTGSGKT 541
P+ M GK++V +A+TGSGKT
Sbjct: 313 PLVMDGKDVVAMARTGSGKT 332
>SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 480
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = +2
Query: 368 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGW 481
++H P++ + FP Y + Y P P QA W
Sbjct: 6 DIHGPVRKLHKHGFPGYEEDYAAVFKYPTPWPEQAMEW 43
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +2
Query: 461 PIQAQGWPIAMSGKNLVGVAQTGSGKT--FGLHFASNLCTLNNQPPIRRGDGPELL 622
PIQA + G++++G A+TG+GKT F L L + + +RG P++L
Sbjct: 98 PIQASTFNYIYDGEDVIGQARTGTGKTLSFALPLVEKL--QDGKLSQKRGRAPKVL 151
>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 505
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +2
Query: 314 PYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 445
P+E + + KH++ V+ VE + +Q +E F + ++Q VK G
Sbjct: 252 PFEPPKPKTKHKLDVATVEDYKKLQEYEREKFTEMIKQ-VKDTG 294
>SB_3046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 734
Score = 29.9 bits (64), Expect = 1.9
Identities = 30/129 (23%), Positives = 52/129 (40%), Gaps = 5/129 (3%)
Frame = -1
Query: 458 SVLCNPLSLHLVAHNQENLLLQSIE*DYEPQRHLQLPRVYFYTLRLHMVIF*E-----L* 294
++ C L ++ +N LLL + Y Q L +VY T H ++ L
Sbjct: 397 AIACCLLQVYHNTYNSHRLLLIAGVSQYLQQPSLAAMQVYHNTYNSHRLLLIAGVSQYLQ 456
Query: 293 DVDHKSFC*KVGVKQNPNLGVACSALQRILFSHQSLQILQIYCHRCQTETNYRRICCLLQ 114
++C + + L A + + H L YC RC T CCLLQ
Sbjct: 457 QPSLAAYCRCITI-----LTTAIACCYASVSQHLQQPSLAAYC-RCITILTTAIACCLLQ 510
Query: 113 IWNHRFHGY 87
++++ ++G+
Sbjct: 511 VYHNTYNGH 519
>SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)
Length = 675
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 326 EEYRNK-HEVTVSGVEVHNPIQYFEEANFPDY 418
EE NK H++ + + +HNP YFE+ + DY
Sbjct: 234 EEVNNKLHKILIVNM-IHNPFNYFEKKSPTDY 264
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +2
Query: 413 DYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKT 541
D V + + + +PT IQ P + +++ AQTGSGKT
Sbjct: 387 DDVLKALDALNIHQPTVIQMVTIPKIIHRHHVICAAQTGSGKT 429
>SB_55554| Best HMM Match : AAA (HMM E-Value=0.022)
Length = 1681
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +2
Query: 485 IAMSGKNLVGVAQTGSGKTFGLH-FASNLCTLNNQPPIRRGDG 610
+ S KN+V + GSGKT LH + ++ +L+NQ ++ G
Sbjct: 263 VLQSNKNVVVLGDAGSGKTTLLHALSGSVNSLHNQQCVQTSRG 305
>SB_8125| Best HMM Match : MFS_1 (HMM E-Value=3.2e-07)
Length = 401
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -1
Query: 221 ALQRILFSHQSLQILQIYCHRCQTETNYRRICCLLQIWN-HRFHGYYSS 78
AL+RI + ++ C +YRR CC L +W H + Y+SS
Sbjct: 197 ALERIATPVTTSKLRCSTTQECCVRVDYRRKCC-LHVWRVHTTNTYWSS 244
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,686,661
Number of Sequences: 59808
Number of extensions: 414889
Number of successful extensions: 1230
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 1151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1228
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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