Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0877
(650 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 132 1e-31
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 118 4e-27
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 118 4e-27
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 101 5e-22
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 100 7e-22
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 100 1e-21
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 91 6e-19
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 91 6e-19
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 91 6e-19
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 83 2e-16
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 77 1e-14
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 72 3e-13
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 61 7e-10
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 58 4e-09
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 58 7e-09
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 57 1e-08
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 56 2e-08
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 56 3e-08
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 56 3e-08
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 55 4e-08
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 52 3e-07
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 52 3e-07
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 51 6e-07
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 51 6e-07
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 49 3e-06
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 47 9e-06
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 47 9e-06
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 46 2e-05
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 43 2e-04
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 42 4e-04
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 42 4e-04
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 42 5e-04
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 42 5e-04
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 42 5e-04
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 40 0.001
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 40 0.001
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 40 0.002
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 40 0.002
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 40 0.002
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 39 0.003
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 39 0.003
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 38 0.004
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 38 0.006
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 37 0.010
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 37 0.010
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 37 0.013
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 37 0.013
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 37 0.013
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 36 0.023
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 35 0.054
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 33 0.12
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 33 0.16
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 33 0.16
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 32 0.29
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 31 0.50
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 31 0.66
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 31 0.88
At3g42725.1 68416.m04461 expressed protein 30 1.2
At2g25460.1 68415.m03049 expressed protein 30 1.2
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 29 3.5
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 28 4.7
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 28 4.7
At5g52530.2 68418.m06518 dentin sialophosphoprotein-related cont... 28 6.2
At5g52530.1 68418.m06517 dentin sialophosphoprotein-related cont... 28 6.2
At5g37160.1 68418.m04461 tRNA-splicing endonuclease positive eff... 28 6.2
At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein heli... 28 6.2
At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical... 28 6.2
At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical... 28 6.2
At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical... 28 6.2
At5g64440.1 68418.m08095 amidase family protein low similarity t... 27 8.2
At1g13810.1 68414.m01621 expressed protein ; expression supporte... 27 8.2
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 132 bits (320), Expect = 1e-31
Identities = 62/134 (46%), Positives = 86/134 (64%)
Frame = +2
Query: 221 QNMRRPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEE 400
++ R+ D D L PF KNFY P V + EVEEYR E+TV G ++ P++ F +
Sbjct: 46 ESPRKLDLDG--LTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRD 103
Query: 401 ANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTFGLHFASNLCTLN 580
FPDYV + VK G+ EPTPIQ+QGWP+AM G++L+G+A+TGSGKT + + +N
Sbjct: 104 VGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLS-YLLPAIVHVN 162
Query: 581 NQPPIRRGDGPELL 622
QP + GDGP +L
Sbjct: 163 AQPMLAHGDGPIVL 176
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 118 bits (283), Expect = 4e-27
Identities = 52/123 (42%), Positives = 82/123 (66%)
Frame = +2
Query: 254 SLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 433
+L F KNFY PTV + +V YR + +++V G +V P++ F++ANFPD + + +
Sbjct: 121 NLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPDNILEAI 180
Query: 434 KTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTFGLHFASNLCTLNNQPPIRRGDGP 613
+G+ EPTPIQAQGWP+A+ G++L+G+A+TGSGKT + L ++ QP + + DGP
Sbjct: 181 AKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLA-YLLPALVHVSAQPRLGQDDGP 239
Query: 614 ELL 622
+L
Sbjct: 240 IVL 242
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 118 bits (283), Expect = 4e-27
Identities = 52/123 (42%), Positives = 82/123 (66%)
Frame = +2
Query: 254 SLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 433
+L F KNFY PTV + +V YR + +++V G +V P++ F++ANFPD + + +
Sbjct: 121 NLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPDNILEAI 180
Query: 434 KTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTFGLHFASNLCTLNNQPPIRRGDGP 613
+G+ EPTPIQAQGWP+A+ G++L+G+A+TGSGKT + L ++ QP + + DGP
Sbjct: 181 AKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLA-YLLPALVHVSAQPRLGQDDGP 239
Query: 614 ELL 622
+L
Sbjct: 240 IVL 242
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 101 bits (241), Expect = 5e-22
Identities = 43/125 (34%), Positives = 74/125 (59%)
Frame = +2
Query: 239 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDY 418
D S+ +P NK+FY+ ++ + E +YR + + VSG +VH P++ FE+ F
Sbjct: 179 DHSSIDYEPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQ 238
Query: 419 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTFGLHFASNLCTLNNQPPIR 598
+ +K Y++PT IQ Q PI +SG++++G+A+TGSGKT + + +QP ++
Sbjct: 239 IMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKT-AAFVLPMIVHIMDQPELQ 297
Query: 599 RGDGP 613
R +GP
Sbjct: 298 RDEGP 302
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 100 bits (240), Expect = 7e-22
Identities = 48/125 (38%), Positives = 71/125 (56%)
Frame = +2
Query: 239 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDY 418
D + +PF KNFY + + + V YR + E+ V G +V PIQ++ +
Sbjct: 347 DHSKIEYEPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSK 406
Query: 419 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTFGLHFASNLCTLNNQPPIR 598
+ +K + Y++P PIQAQ PI MSG++ +GVA+TGSGKT G L + +QPP+
Sbjct: 407 ILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGF-VLPMLRHIKDQPPVE 465
Query: 599 RGDGP 613
GDGP
Sbjct: 466 AGDGP 470
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 100 bits (239), Expect = 1e-21
Identities = 47/125 (37%), Positives = 71/125 (56%)
Frame = +2
Query: 239 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDY 418
D + +PF KNFY + + + EV YR + E+ V G +V PI+++ +
Sbjct: 480 DHSKIEYEPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSK 539
Query: 419 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTFGLHFASNLCTLNNQPPIR 598
+ +K + Y++P PIQ Q PI MSG++ +GVA+TGSGKT G L + +QPP+
Sbjct: 540 ILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGF-VLPMLRHIKDQPPVE 598
Query: 599 RGDGP 613
GDGP
Sbjct: 599 AGDGP 603
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 91.1 bits (216), Expect = 6e-19
Identities = 41/87 (47%), Positives = 55/87 (63%)
Frame = +2
Query: 287 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 466
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 467 QAQGWPIAMSGKNLVGVAQTGSGKTFG 547
QAQ WPIAM G+++V +A+TGSGKT G
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLG 211
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 91.1 bits (216), Expect = 6e-19
Identities = 41/87 (47%), Positives = 55/87 (63%)
Frame = +2
Query: 287 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 466
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 467 QAQGWPIAMSGKNLVGVAQTGSGKTFG 547
QAQ WPIAM G+++V +A+TGSGKT G
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLG 211
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 91.1 bits (216), Expect = 6e-19
Identities = 41/87 (47%), Positives = 55/87 (63%)
Frame = +2
Query: 287 PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 466
P P+ S E Y +HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 467 QAQGWPIAMSGKNLVGVAQTGSGKTFG 547
QAQ WPIAM G+++V +A+TGSGKT G
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLG 211
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 83.0 bits (196), Expect = 2e-16
Identities = 41/97 (42%), Positives = 58/97 (59%), Gaps = 4/97 (4%)
Frame = +2
Query: 269 NKNFYDPH----PTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 436
NK+ PH P V SP E+ YR +HEVT +G + P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 437 TMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTFG 547
+ G+ PTPIQAQ WPIA+ +++V +A+TGSGKT G
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLG 488
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 77.0 bits (181), Expect = 1e-14
Identities = 39/114 (34%), Positives = 64/114 (56%), Gaps = 2/114 (1%)
Frame = +2
Query: 278 FYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 457
++ P V K S +++ R + +TV+G ++ PI+ F + FP + + +K G P
Sbjct: 61 WWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHP 120
Query: 458 TPIQAQGWPIAMSGKNLVGVAQTGSGKTFGLHFASNLCTLNNQ--PPIRRGDGP 613
TPIQ QG P+ +SG++++G+A TGSGKT + L + PI G+GP
Sbjct: 121 TPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGP 174
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 72.1 bits (169), Expect = 3e-13
Identities = 37/113 (32%), Positives = 62/113 (54%), Gaps = 2/113 (1%)
Frame = +2
Query: 281 YDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 460
+ P + K S + + R + + V+G ++ PI+ F++ FP V +K G +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 461 PIQAQGWPIAMSGKNLVGVAQTGSGKTFGLHFASNLCTLNNQ--PPIRRGDGP 613
PIQ QG P+ ++G++++G+A TGSGKT + L + PI G+GP
Sbjct: 171 PIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGP 223
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 60.9 bits (141), Expect = 7e-10
Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 2/97 (2%)
Frame = +2
Query: 320 EVEEYRNKHEVTVSGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 493
E E + K VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 494 SGKNLVGVAQTGSGKTFGLHFASNLCTLNNQPPIRRG 604
G++L+G+A+TGSGKT + + L I G
Sbjct: 150 DGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGG 186
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 58.4 bits (135), Expect = 4e-09
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Frame = +2
Query: 335 RNKHEVTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 502
R ++ + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI +SG+
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Query: 503 NLVGVAQTGSGKTF 544
A TGSGKTF
Sbjct: 180 ECFACAPTGSGKTF 193
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 57.6 bits (133), Expect = 7e-09
Identities = 22/70 (31%), Positives = 43/70 (61%)
Frame = +2
Query: 332 YRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 511
+R ++ G + P++ +EE+ + + V+ GYK+P+PIQ P+ + ++++
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVI 354
Query: 512 GVAQTGSGKT 541
G+A+TGSGKT
Sbjct: 355 GIAETGSGKT 364
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 56.8 bits (131), Expect = 1e-08
Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 3/114 (2%)
Frame = +2
Query: 224 NMRRPDWD--SVSLQPFNKNFYDPHPTVLKRSPYEVE-EYRNKHEVTVSGVEVHNPIQYF 394
N R WD + PF + +P P ++ + + + SG V P+ F
Sbjct: 102 NNRSGGWDRREREVNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTF 161
Query: 395 EEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTFGLHF 556
E + + + ++ Y +PTP+Q PI + G++L+ AQTGSGKT F
Sbjct: 162 AEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCF 215
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 56.4 bits (130), Expect = 2e-08
Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 4/98 (4%)
Frame = +2
Query: 311 SPYEVEEYRNKHEVTVSGV--EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 484
S ++ + R K ++ V G V P+ F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 485 IAMSGKNLVGVAQTGSGKT--FGLHFASNLCTLNNQPP 592
A++GK+L+ A TGSGKT F + S T +++ P
Sbjct: 143 AALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHP 180
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 55.6 bits (128), Expect = 3e-08
Identities = 22/39 (56%), Positives = 30/39 (76%)
Frame = +2
Query: 431 VKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTFG 547
V + G+ P+PIQAQ WPIAM +++V +A+TGSGKT G
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLG 282
Score = 33.1 bits (72), Expect = 0.16
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 326 EEYRNKHEVTVSGVEVHNPIQYFEEANFPD 415
E Y KHE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 55.6 bits (128), Expect = 3e-08
Identities = 35/114 (30%), Positives = 51/114 (44%), Gaps = 3/114 (2%)
Frame = +2
Query: 224 NMRRPDWD--SVSLQPF-NKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYF 394
N R WD PF N DP + + E Y + + SG V P+ F
Sbjct: 90 NARSGGWDRRDTETNPFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTF 148
Query: 395 EEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTFGLHF 556
E + + + ++ Y +PTP+Q PI +G++L+ AQTGSGKT F
Sbjct: 149 AEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCF 202
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 55.2 bits (127), Expect = 4e-08
Identities = 29/63 (46%), Positives = 39/63 (61%)
Frame = +2
Query: 353 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGS 532
TV GV H F E N + + +T+GYK+PTPIQA P+A++G++L A TGS
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGS 215
Query: 533 GKT 541
GKT
Sbjct: 216 GKT 218
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 52.4 bits (120), Expect = 3e-07
Identities = 22/58 (37%), Positives = 38/58 (65%)
Frame = +2
Query: 368 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKT 541
E + ++ F E + + + + +G+K P+ IQA+ P A+ GK+++G+AQTGSGKT
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKT 60
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 52.4 bits (120), Expect = 3e-07
Identities = 24/50 (48%), Positives = 32/50 (64%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKT 541
FE N V +K GYK PTPIQ + P+ +SG ++V +A+TGSGKT
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKT 79
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 51.2 bits (117), Expect = 6e-07
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 3/114 (2%)
Frame = +2
Query: 224 NMRRPDWD--SVSLQPFNKNF-YDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYF 394
N R WD + PF + +P T + + + Y + V SG +V P+ F
Sbjct: 95 NNRSGGWDRREREVNPFGDDAELEPVFTEQENTGINFDAYEDI-PVETSGGDVPPPVNTF 153
Query: 395 EEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTFGLHF 556
+ + D + ++ Y PTP+Q PI ++ ++L+ AQTGSGKT F
Sbjct: 154 ADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCF 207
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 51.2 bits (117), Expect = 6e-07
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 3/114 (2%)
Frame = +2
Query: 224 NMRRPDWD--SVSLQPFNKNF-YDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYF 394
N R WD + PF + +P T + + + Y + V SG +V P+ F
Sbjct: 95 NNRSGGWDRREREVNPFGDDAELEPVFTEQENTGINFDAYEDI-PVETSGGDVPPPVNTF 153
Query: 395 EEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTFGLHF 556
+ + D + ++ Y PTP+Q PI ++ ++L+ AQTGSGKT F
Sbjct: 154 ADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCF 207
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 48.8 bits (111), Expect = 3e-06
Identities = 28/94 (29%), Positives = 46/94 (48%)
Frame = +2
Query: 260 QPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 439
+P K T K EVE+ + ++ + + + FE + D + +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKE 171
Query: 440 MGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKT 541
MG+ T IQA+ P M G++++G A+TGSGKT
Sbjct: 172 MGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKT 205
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 47.2 bits (107), Expect = 9e-06
Identities = 28/74 (37%), Positives = 38/74 (51%)
Frame = +2
Query: 320 EVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 499
EVEE RN E E P + FEE + + + G ++PT IQ P + G
Sbjct: 25 EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 500 KNLVGVAQTGSGKT 541
K++V A+TGSGKT
Sbjct: 84 KDVVARAKTGSGKT 97
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 47.2 bits (107), Expect = 9e-06
Identities = 19/50 (38%), Positives = 33/50 (66%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKT 541
FE ++ + K +G ++PTP+Q P ++G++++G+AQTGSGKT
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKT 109
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 46.0 bits (104), Expect = 2e-05
Identities = 23/68 (33%), Positives = 41/68 (60%)
Frame = +2
Query: 380 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTFGLHFA 559
PI+ F++ D V +GV GYK+P+ IQ + + G++++ AQ+G+GKT + A
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMI--A 77
Query: 560 SNLCTLNN 583
++C + N
Sbjct: 78 ISVCQIVN 85
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 42.7 bits (96), Expect = 2e-04
Identities = 18/53 (33%), Positives = 33/53 (62%)
Frame = +2
Query: 383 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKT 541
++ F + D ++G+K Y + T +Q+ P A+ G++++G A+TGSGKT
Sbjct: 70 VRKFAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKT 122
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 41.9 bits (94), Expect = 4e-04
Identities = 17/50 (34%), Positives = 32/50 (64%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKT 541
FE+ + G+ G++ P+PIQ + PIA++G++++ A+ G+GKT
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKT 182
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 41.9 bits (94), Expect = 4e-04
Identities = 17/50 (34%), Positives = 32/50 (64%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKT 541
FE+ + G+ G++ P+PIQ + PIA++G++++ A+ G+GKT
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKT 182
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 41.5 bits (93), Expect = 5e-04
Identities = 17/50 (34%), Positives = 33/50 (66%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKT 541
FE+ + +G+ G+++P+PIQ + PIA++G +++ A+ G+GKT
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKT 175
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 41.5 bits (93), Expect = 5e-04
Identities = 17/50 (34%), Positives = 33/50 (66%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKT 541
FE+ + +G+ G+++P+PIQ + PIA++G +++ A+ G+GKT
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKT 175
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 41.5 bits (93), Expect = 5e-04
Identities = 17/50 (34%), Positives = 33/50 (66%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKT 541
FE+ + +G+ G+++P+PIQ + PIA++G +++ A+ G+GKT
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKT 205
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/63 (31%), Positives = 36/63 (57%)
Frame = +2
Query: 353 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGS 532
T G+E PI F + + V +GV G+++P+ IQ + + G++++ AQ+G+
Sbjct: 27 TTDGIE---PITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGT 83
Query: 533 GKT 541
GKT
Sbjct: 84 GKT 86
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/73 (27%), Positives = 39/73 (53%)
Frame = +2
Query: 323 VEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 502
+E+ ++ + + G + + F+ + + +K MG++ T IQA + GK
Sbjct: 69 MEDGEDEKNIVIVGKGIMTNVT-FDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGK 127
Query: 503 NLVGVAQTGSGKT 541
+++G A+TGSGKT
Sbjct: 128 DVLGAARTGSGKT 140
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 39.5 bits (88), Expect = 0.002
Identities = 25/77 (32%), Positives = 40/77 (51%)
Frame = +2
Query: 311 SPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIA 490
S E ++ K ++ V VEV NP + +++ +K G + PIQA + +
Sbjct: 72 SSSEKKKSSKKVKLGVEDVEVDNP-NAVSKFRISAPLREKLKANGIEALFPIQASTFDMV 130
Query: 491 MSGKNLVGVAQTGSGKT 541
+ G +LVG A+TG GKT
Sbjct: 131 LDGADLVGRARTGQGKT 147
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Frame = +2
Query: 419 VQQGVKTMGYKEPTPIQAQGWPIAM-SGKNLVGVAQTGSGKT--FGLHFASNL 568
+ + + + +KEPT IQ + +A GK+++G A+TGSGKT FGL L
Sbjct: 201 LMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLPILQRL 253
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/34 (47%), Positives = 26/34 (76%)
Frame = +2
Query: 440 MGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKT 541
MG++ PT +QAQ P+ +SG++++ A TG+GKT
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKT 81
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/77 (24%), Positives = 36/77 (46%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTFGLHFASNLC 571
F++ +G++ G+K T +Q P+ + GK+++ A+TG+GKT S
Sbjct: 82 FDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEA 141
Query: 572 TLNNQPPIRRGDGPELL 622
+ P R P ++
Sbjct: 142 VIKAPPASRDNRHPPII 158
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKT 541
FEE PD + ++ G+ PT +Q+ P + G + V + TGSGKT
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKT 161
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 38.3 bits (85), Expect = 0.004
Identities = 16/44 (36%), Positives = 28/44 (63%)
Frame = +2
Query: 410 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKT 541
P+++ ++ +G+ PT IQ + P +G++ + AQTGSGKT
Sbjct: 84 PEHILHRMEEIGFVFPTDIQREALPTLFTGRDCILHAQTGSGKT 127
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = +2
Query: 413 DYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTFG 547
D V ++ G+ P+ QA P +SGK+++ A+TGSGKT G
Sbjct: 89 DNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHG 133
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 37.1 bits (82), Expect = 0.010
Identities = 19/66 (28%), Positives = 32/66 (48%)
Frame = +2
Query: 425 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTFGLHFASNLCTLNNQPPIRRG 604
+ +K GY+ T +Q PI + GK+++ A+TG+GKT S + + P
Sbjct: 67 KAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDN 126
Query: 605 DGPELL 622
P +L
Sbjct: 127 KRPPIL 132
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 37.1 bits (82), Expect = 0.010
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +2
Query: 383 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKT 541
++ F+E + V ++ + + PT IQ G P M K++V + TGSGKT
Sbjct: 111 VENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKT 163
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 36.7 bits (81), Expect = 0.013
Identities = 17/66 (25%), Positives = 33/66 (50%)
Frame = +2
Query: 425 QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTFGLHFASNLCTLNNQPPIRRG 604
+ +K G++ T +Q PI + GK+++ A+TG+GKT + + + P R
Sbjct: 395 KAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDS 454
Query: 605 DGPELL 622
P ++
Sbjct: 455 RQPPII 460
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 36.7 bits (81), Expect = 0.013
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +2
Query: 443 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKT--FGLHFASNLCTLNNQPP 592
G++ TP+QA+ P S K++V A TGSGKT F L F + N+ PP
Sbjct: 35 GFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP 86
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 36.7 bits (81), Expect = 0.013
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +2
Query: 443 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKT--FGLHFASNLCTLNNQPP 592
G++ TP+QA+ P S K++V A TGSGKT F L F + N+ PP
Sbjct: 36 GFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP 87
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 35.9 bits (79), Expect = 0.023
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +2
Query: 419 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKT--FGLHFASNLCTLNNQPP 592
+ + +K G ++ PIQ AM G++++G A+TG+GKT FG+ + N +
Sbjct: 127 IVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKH- 185
Query: 593 IRRGDGPELL 622
RG P+ L
Sbjct: 186 -GRGKNPQCL 194
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 34.7 bits (76), Expect = 0.054
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Frame = +2
Query: 320 EVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT-MGYKEPTPIQAQGWPIAMS 496
E E N VT SG + FE+ N + +G+ M +++P+ IQA P+ M+
Sbjct: 70 EEPEDSNIKAVT-SGDTPYTSASRFEDLNLSPELMKGLYVEMKFEKPSKIQAISLPMIMT 128
Query: 497 --GKNLVGVAQTGSGKT 541
K+L+ A GSGKT
Sbjct: 129 PPHKHLIAQAHNGSGKT 145
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 33.5 bits (73), Expect = 0.12
Identities = 17/58 (29%), Positives = 33/58 (56%)
Frame = +2
Query: 368 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKT 541
EVH + F+ + + +G+ G+++P+ IQ +G G +++ AQ+G+GKT
Sbjct: 36 EVH---ESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKT 90
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 33.1 bits (72), Expect = 0.16
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +2
Query: 419 VQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKT--FGLHFASNLCTLN 580
+ + + + G ++ PIQ AM G++++G A+TG+GKT FG+ + N
Sbjct: 115 IVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYN 170
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 33.1 bits (72), Expect = 0.16
Identities = 19/72 (26%), Positives = 37/72 (51%)
Frame = +2
Query: 326 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 505
E + E S +VH + F+ + + +G+ G+++P+ IQ +G G +
Sbjct: 22 EVLEGQDEFFTSYDDVH---ESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLD 78
Query: 506 LVGVAQTGSGKT 541
++ AQ+G+GKT
Sbjct: 79 VIQQAQSGTGKT 90
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 32.3 bits (70), Expect = 0.29
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +2
Query: 392 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKT 541
F E + + + +K + P IQA + + GK+ + Q+GSGKT
Sbjct: 376 FAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKT 425
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 31.5 bits (68), Expect = 0.50
Identities = 15/44 (34%), Positives = 28/44 (63%)
Frame = +2
Query: 410 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKT 541
PD ++ G+ G+++P+ IQ +G G +++ AQ+G+GKT
Sbjct: 50 PDLLR-GIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKT 92
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 31.1 bits (67), Expect = 0.66
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +2
Query: 473 QGWPIAMSGKNLVGVAQTGSGKT--FGLHFASNLCTLNNQPP 592
Q P A++GK+L+ A TGSGKT F + S T +++ P
Sbjct: 2 QAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHP 43
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 30.7 bits (66), Expect = 0.88
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +2
Query: 404 NFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKT--FGLHFASNL 568
+ P +++ ++ G PIQ A+ G++++ A+TG+GKT FG+ L
Sbjct: 108 SLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRL 164
>At3g42725.1 68416.m04461 expressed protein
Length = 202
Score = 30.3 bits (65), Expect = 1.2
Identities = 22/68 (32%), Positives = 37/68 (54%)
Frame = +3
Query: 147 LGLATVAIDLEDLEALVGKKNSLEGRTCDAQIGILFHSNLSTKTFMIHILQFSKDHHMKS 326
LGLA +A+ L L + G +S + R+C I H + T F+ ++ FS++ +S
Sbjct: 44 LGLAFLAVSLVSLISSFGSASSHQSRSCFI-ARITLHVSSLTGQFIAVLMLFSRE--KQS 100
Query: 327 KSIEINTR 350
S+ I+TR
Sbjct: 101 LSLLISTR 108
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = -1
Query: 200 SHQSLQILQIYCHRCQTETNYRRICCLLQIWNHRFHGYY 84
+H S + + + + + E + R+CC++ WN F+ +Y
Sbjct: 63 NHTSSKPIALGSNHVEWEEEFERVCCIVGPWNLSFNVFY 101
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +2
Query: 458 TPIQAQGWPIAMSGKNLVGVAQTGSGKT 541
TP+QA P+ S K++ A TGSGKT
Sbjct: 40 TPVQAATIPLLCSYKDVAVDAATGSGKT 67
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +2
Query: 272 KNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQ 427
K D H +L P+E + + KH+V + VE ++ E+ F + VQ+
Sbjct: 161 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 211
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +2
Query: 272 KNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQ 427
K D H +L P+E + + KH+V + VE ++ E+ F + VQ+
Sbjct: 237 KQIEDAHIAILT-CPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQK 287
>At5g52530.2 68418.m06518 dentin sialophosphoprotein-related
contains weak similarity to dentin sialophosphoprotein
precursor (Dentin matrix protein-3) (DMP- 3)
(Swiss-Prot:P97399) [Mus musculus]
Length = 828
Score = 27.9 bits (59), Expect = 6.2
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Frame = +2
Query: 224 NMRRPDWDSVSLQPF--NKNFYDPHPTVLKRSPYEVEEYR--NKHEVTVSGVEVHNPIQY 391
+MRRP+ D+ +L+PF N+ F +P + + +E+ + R + E T G +V ++
Sbjct: 752 SMRRPNSDNNNLRPFIPNRRFDNPEEST-GGNRFEMTQQRRTRRSETTEDGGDVIRRFKF 810
Query: 392 FEE 400
EE
Sbjct: 811 NEE 813
>At5g52530.1 68418.m06517 dentin sialophosphoprotein-related
contains weak similarity to dentin sialophosphoprotein
precursor (Dentin matrix protein-3) (DMP- 3)
(Swiss-Prot:P97399) [Mus musculus]
Length = 828
Score = 27.9 bits (59), Expect = 6.2
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Frame = +2
Query: 224 NMRRPDWDSVSLQPF--NKNFYDPHPTVLKRSPYEVEEYR--NKHEVTVSGVEVHNPIQY 391
+MRRP+ D+ +L+PF N+ F +P + + +E+ + R + E T G +V ++
Sbjct: 752 SMRRPNSDNNNLRPFIPNRRFDNPEEST-GGNRFEMTQQRRTRRSETTEDGGDVIRRFKF 810
Query: 392 FEE 400
EE
Sbjct: 811 NEE 813
>At5g37160.1 68418.m04461 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 871
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = -1
Query: 587 VGYLMCTNCWQNVGQTFCRNPFGLRQLNSFQT*LSASLELEWASVLCNPLSLHLVA 420
+G+L NC P G + + T LS ++L+ +V+C P + +VA
Sbjct: 253 LGFLKTRNCKHKESVKLIWGPPGTGKTKTVATLLSTLMQLKCKTVVCAPTNTTIVA 308
>At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein helicase,
putative
Length = 2172
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 446 YKEPTPIQAQGWPIAMS-GKNLVGVAQTGSGKTFGLHFA 559
+K P+Q Q + + + N+V A TGSGKT FA
Sbjct: 1349 FKHFNPVQTQVFTVLYNTSDNVVVAAPTGSGKTICAEFA 1387
>At2g01830.3 68415.m00115 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.9 bits (59), Expect = 6.2
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +2
Query: 281 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 457
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 458 TPIQAQGWPIAMS 496
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At2g01830.2 68415.m00116 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1080
Score = 27.9 bits (59), Expect = 6.2
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +2
Query: 281 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 457
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 195 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 254
Query: 458 TPIQAQGWPIAMS 496
+P++ + P+ S
Sbjct: 255 SPVRDEYAPVIFS 267
>At2g01830.1 68415.m00114 histidine kinase (AHK4) (WOL) identical to
histidine kinase AHK4 [Arabidopsis thaliana]
gi|13537200|dbj|BAB40776; contains Pfam profiles
PF03924: CHASE domain, PF02518: ATPase, histidine
kinase-, DNA gyrase B-, and HSP90-like domain protein,
PF00512: His Kinase A (phosphoacceptor) domain,
PF00072: Response regulator receiver domain
Length = 1057
Score = 27.9 bits (59), Expect = 6.2
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +2
Query: 281 YDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 457
Y +P+ + + + R E +SGV + FE F +KTM EP
Sbjct: 172 YHKNPSAIDQETFAEYTARTAFERPLLSGVAYAEKVVNFEREMFERQHNWVIKTMDRGEP 231
Query: 458 TPIQAQGWPIAMS 496
+P++ + P+ S
Sbjct: 232 SPVRDEYAPVIFS 244
>At5g64440.1 68418.m08095 amidase family protein low similarity to
enantiomerase-selective amidase [Rhodococcus sp.]
GI:152052; contains Pfam profile PF01425: Amidase
Length = 607
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +3
Query: 81 GIIAVETVVPNLEEATNSAIIRLGLATVAIDLEDLEALVGKKNSLEGRT 227
G VE VVP LEE + +I +G T++ EA K S + RT
Sbjct: 423 GCKVVEIVVPELEEMRAAHVISIGSPTLSSLTPYCEAGKNSKLSYDTRT 471
>At1g13810.1 68414.m01621 expressed protein ; expression supported
by MPSS
Length = 303
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 295 RMWIIKVFVERLE*NRIPIWASHVLPSREFF 203
R+W F E ++ W +HVLP+RE +
Sbjct: 222 RVWRDTAFWEDMKPALFDFWQNHVLPAREIY 252
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,851,291
Number of Sequences: 28952
Number of extensions: 296745
Number of successful extensions: 931
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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