Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0876
         (788 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    27   4.0  
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce...    27   4.0  
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|...    26   5.4  
SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p...    26   7.1  
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    25   9.4  

>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 23/93 (24%), Positives = 41/93 (44%)
 Frame = +2

Query: 380 NIMPMPGDDVSVLFCSIISAWIQYFYTATWFWTLFYAIDTWNTIKRRDSHTILYHSFAWG 559
           N  P       V +C  I+  +  F  + +F TL  A D+   +     +    +    G
Sbjct: 493 NFTPTSKTGAFVSWCLWITVLVAKFLESYFFLTLNLA-DSIRFLGAMRPYDCRDYILGAG 551

Query: 560 LPIATTSIGLSILYIS*CNVSMLLKYLYLLIVS 658
           L  A   I LS+LY++  ++  L  YL+ +++S
Sbjct: 552 LCKAQPKILLSLLYLTDLSLFFLDTYLWYILIS 584


>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 813

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +2

Query: 134 KEDMAVRIMDEFNTDSYNIVCLVSSSIGILGAIYQIFP-DILSITRPRKNLSQ 289
           K + A+R+ + F   +  + C+ + +IG++  I Q    DI+      KN  +
Sbjct: 377 KSERAIRLYNVFADQTQEVDCISAGNIGVISGIKQFHTGDIIINKENSKNFHE 429


>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
           Mts4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +2

Query: 536 LYHSFAWGLPIATTSIGLSILYIS*CNVSMLLKYLY 643
           +Y +   GL  AT SIGL  L+     +S+L KYLY
Sbjct: 398 IYKNKESGLISATASIGLLQLWNVDMGLSLLDKYLY 433


>SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 252

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -2

Query: 589 QSDASSGYRKSPSKRMIQNC-MRITPLDSIPCIYGIKKSPKPS 464
           + D +  +R+S  + +  +C M I   +++ CI  IKK  KP+
Sbjct: 64  EQDPTLTFRRSCREGICGSCAMNINGSNTLACICNIKKDNKPT 106


>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = +2

Query: 431 ISAWIQYFYTATWFWTL---FYAIDTWNTIKRRDSHTILYHS 547
           ++ ++  F ++T+F  +    YA D  N++ RR   T+LYHS
Sbjct: 746 LNYFMNSFLSSTYFDAVKDRLYA-DLPNSVSRRSVQTVLYHS 786


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,274,123
Number of Sequences: 5004
Number of extensions: 71082
Number of successful extensions: 148
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)