Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0876
         (788 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36244| Best HMM Match : 7tm_2 (HMM E-Value=1.2e-12)                 44   1e-04
SB_37980| Best HMM Match : 7tm_2 (HMM E-Value=5.3e-13)                 38   0.007
SB_48778| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.007
SB_45587| Best HMM Match : Somatomedin_B (HMM E-Value=1e-06)           38   0.007
SB_54225| Best HMM Match : 7tm_2 (HMM E-Value=1.9e-22)                 38   0.009
SB_39597| Best HMM Match : 7tm_2 (HMM E-Value=2.9e-13)                 36   0.028
SB_36243| Best HMM Match : 7tm_2 (HMM E-Value=2.2e-09)                 35   0.065
SB_8158| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.20 
SB_24384| Best HMM Match : I-set (HMM E-Value=4.3e-31)                 33   0.35 
SB_22282| Best HMM Match : 7tm_2 (HMM E-Value=9.5e-09)                 32   0.46 
SB_57573| Best HMM Match : 7tm_2 (HMM E-Value=3.7e-40)                 32   0.61 
SB_26705| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_6223| Best HMM Match : Ras (HMM E-Value=0)                          29   3.2  
SB_9975| Best HMM Match : 7tm_2 (HMM E-Value=1.9e-38)                  29   3.2  
SB_20978| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.7  
SB_48924| Best HMM Match : 7tm_2 (HMM E-Value=1.5e-16)                 28   7.5  
SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_38792| Best HMM Match : 7tm_2 (HMM E-Value=2e-13)                   28   9.9  
SB_39704| Best HMM Match : 7tm_2 (HMM E-Value=7e-12)                   28   9.9  

>SB_36244| Best HMM Match : 7tm_2 (HMM E-Value=1.2e-12)
          Length = 849

 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 16/38 (42%), Positives = 25/38 (65%)
 Frame = +2

Query: 416 LFCSIISAWIQYFYTATWFWTLFYAIDTWNTIKRRDSH 529
           L C++++A +QYFY  ++ WT   A+DTW    R+ SH
Sbjct: 444 LACTVVAAMLQYFYLVSFMWTSIIAVDTWRAFSRK-SH 480


>SB_37980| Best HMM Match : 7tm_2 (HMM E-Value=5.3e-13)
          Length = 1297

 Score = 38.3 bits (85), Expect = 0.007
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 422 CSIISAWIQYFYTATWFWTLFYAIDTWNTIKRR 520
           C++++A IQ+FY  ++ WT   A DTW     +
Sbjct: 808 CTVVAALIQFFYLVSFMWTSIIAFDTWRAFSSK 840


>SB_48778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1165

 Score = 38.3 bits (85), Expect = 0.007
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +2

Query: 422 CSIISAWIQYFYTATWFWTLFYAIDTW 502
           C+I++A +QYFY  ++ WT   A DTW
Sbjct: 867 CTIVAASLQYFYLVSFMWTSIIAYDTW 893


>SB_45587| Best HMM Match : Somatomedin_B (HMM E-Value=1e-06)
          Length = 1003

 Score = 38.3 bits (85), Expect = 0.007
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 422  CSIISAWIQYFYTATWFWTLFYAIDTWNTIKRRDSHTIL 538
            C++++A +QYFY  ++ WT   A DTW     +     L
Sbjct: 894  CTVVAALLQYFYLVSFTWTSIIAYDTWRAFSSKSYRAAL 932


>SB_54225| Best HMM Match : 7tm_2 (HMM E-Value=1.9e-22)
          Length = 431

 Score = 37.9 bits (84), Expect = 0.009
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = +2

Query: 422 CSIISAWIQYFYTATWFWTLFYAIDTWNTIKR---RDSHTILYHSFAWGLPIATTSIGLS 592
           C   +A +Q F  A  FW L   I  +  + R    D +  L + FAWG+P+    I L+
Sbjct: 215 CVTAAAMLQLFLMAALFWMLLEGIQLYLQLVRVYNADMNLKLCYIFAWGIPVLVVGISLA 274

Query: 593 IL 598
           ++
Sbjct: 275 VV 276


>SB_39597| Best HMM Match : 7tm_2 (HMM E-Value=2.9e-13)
          Length = 1052

 Score = 36.3 bits (80), Expect = 0.028
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 422 CSIISAWIQYFYTATWFWTLFYAIDTWNTIKRRDSH 529
           C++++  + YF+ A++ WT   A DTW     R SH
Sbjct: 817 CTVVAILLHYFFLASFIWTAIIAWDTWRAFSHR-SH 851


>SB_36243| Best HMM Match : 7tm_2 (HMM E-Value=2.2e-09)
          Length = 1338

 Score = 35.1 bits (77), Expect = 0.065
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 422  CSIISAWIQYFYTATWFWTLFYAIDTWNTIKRRDSHTILYHS 547
            C+I++A +QYF+ A + W    A DTW             HS
Sbjct: 994  CAILAALMQYFFLACFVWASVIAFDTWRAFSAGSQRLHSSHS 1035


>SB_8158| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 395

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 416 LFCSIISAWIQYFYTATWFWTLFYAIDTW 502
           +FC+I + ++ Y +  ++ WT   A DTW
Sbjct: 170 VFCTITACFLHYLFLVSFLWTSIIAYDTW 198


>SB_24384| Best HMM Match : I-set (HMM E-Value=4.3e-31)
          Length = 1399

 Score = 32.7 bits (71), Expect = 0.35
 Identities = 13/68 (19%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
 Frame = +2

Query: 413  VLFCSIISAWIQYFYTATWFWTLFYAIDTWNTI----KRRDSHTILYHSFAWGLPIATTS 580
            ++ C++++A +QYF+ A   W +      +  +     R  +    ++   WG+P     
Sbjct: 1302 LIACTVVAALLQYFFIAVICWMVVEGFQLYMVLGSGKNRNPARRKWFYLIGWGVPFLVVG 1361

Query: 581  IGLSILYI 604
            I L +  +
Sbjct: 1362 ISLGVFQL 1369


>SB_22282| Best HMM Match : 7tm_2 (HMM E-Value=9.5e-09)
          Length = 712

 Score = 32.3 bits (70), Expect = 0.46
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
 Frame = +2

Query: 368 LKYKNIMPMPGDDVSVLFCSIISAWIQYFYTATWFWTLFYAIDTWNTIK----RRD---S 526
           + Y+ I    G DV    C +I+  + YF  A + WT   A DT  T      R D    
Sbjct: 472 IMYQVIYQTIGLDVKEEICIVIATTLHYFLLAAFAWTGIMAYDTKKTFSTESIRHDYSAG 531

Query: 527 HTILYHSFAWGLPI 568
             + Y   AWG P+
Sbjct: 532 RFLRYCVTAWGGPL 545


>SB_57573| Best HMM Match : 7tm_2 (HMM E-Value=3.7e-40)
          Length = 956

 Score = 31.9 bits (69), Expect = 0.61
 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
 Frame = +2

Query: 422 CSIISAWIQYFYTATWFWTLFYAIDTWNTI----KRRDSHTILYHSFAWGLPIATTSIGL 589
           C I +  + YFYTA + W        +  I    +++    + Y  F WG P     I  
Sbjct: 529 CMITAMSLHYFYTAAFSWMFLEGFHLYMKIVIAYEKKAIKQLYYFCFGWGFPFIIVGISS 588

Query: 590 SI 595
           ++
Sbjct: 589 AV 590


>SB_26705| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 157

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 523 ITPLDSIPCIYGIKKSPKPSCCIEILYPGRNNTT 422
           +TP+  I  I G   +P P+ CIE L PG + ++
Sbjct: 12  VTPISPIHIILGPPLTPTPTQCIEFLQPGGSTSS 45


>SB_6223| Best HMM Match : Ras (HMM E-Value=0)
          Length = 1665

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +2

Query: 422  CSIISAWIQYFYTATWFWTLFYAIDTWNTIKRR 520
            C II+  + Y + +++ W    A DTW    R+
Sbjct: 1102 CQIIAIALHYSFLSSFTWMSVIAFDTWRAFSRK 1134


>SB_9975| Best HMM Match : 7tm_2 (HMM E-Value=1.9e-38)
          Length = 1101

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
 Frame = +2

Query: 401 DDVSVLFCSIISAWIQYFYTATWFWTLFYAIDTWNTI----KRRDSHTILYHSFAWGLPI 568
           D  + + C +++  + Y YTA + W     +  +  +        S    Y+   WG P+
Sbjct: 540 DAPNPIACKVVALSLHYLYTAAFAWMCCEGVHLYTKVIEVFSSEGSKMKYYYLLGWGAPL 599

Query: 569 ATTSIGLSILY 601
               I  +I +
Sbjct: 600 IIVIISAAIRF 610


>SB_20978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1683

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +3

Query: 393  CLVMMSVYYSVVLFLPGYNISIQQLGFGLFFMP*IHGILSRGVIR 527
            C++ ++  YSV+     + I + +L  GL+F P + G LS  V R
Sbjct: 1529 CVLSLACDYSVMA--SDFRIGLPELSLGLYFAPWMAGTLSNAVGR 1571


>SB_48924| Best HMM Match : 7tm_2 (HMM E-Value=1.5e-16)
          Length = 736

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 23/89 (25%), Positives = 33/89 (37%), Gaps = 6/89 (6%)
 Frame = +2

Query: 335 SSGVLVRSSLWLKYKNIMPMPGDDVSVLFCSIISAWIQYFYTATWFWTLFYAIDTWNTI- 511
           S  +L+   +WL   N    P        C+ I+  +QY Y A + W    +  TW    
Sbjct: 494 SIALLMAQLMWLTLLNQTHYPK------LCTAIAVALQYLYLAAFTWISVISFSTWKAFN 547

Query: 512 -----KRRDSHTILYHSFAWGLPIATTSI 583
                K   S  I   +  W LP+   SI
Sbjct: 548 VFAVAKPVLSQLICRCAVGWLLPLVFVSI 576


>SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3292

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
 Frame = +2

Query: 422  CSIISAWIQYFYTATWFWTLFYAIDTWNTI-KRRDSHT---ILYHSFAWGLP--IATTSI 583
            C +++  + YF++  + W L   +  +  + ++R+  T     Y+   WG P  +   S 
Sbjct: 2525 CRLVAILLHYFFSTVFTWMLVEGVHMYRRLSEKRNIDTGRMNFYYFLGWGCPAIVVGISA 2584

Query: 584  GLS 592
            GLS
Sbjct: 2585 GLS 2587


>SB_38792| Best HMM Match : 7tm_2 (HMM E-Value=2e-13)
          Length = 1287

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
 Frame = +2

Query: 404 DVSVLFCSIISAWIQYFYTATWFWT----LFYAIDTWNTIKRRDSHTIL-YHSFAWGLPI 568
           D + L C  I   + YF     FW     L        T++  + + +L Y+  +WG+P+
Sbjct: 332 DTNPLMCRAIGVLLHYFLLCCLFWVGCGGLCLCRLVRTTLQPEEFNPVLRYYMISWGIPL 391

Query: 569 ATTSI 583
               I
Sbjct: 392 IICGI 396


>SB_39704| Best HMM Match : 7tm_2 (HMM E-Value=7e-12)
          Length = 873

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 13/71 (18%)
 Frame = +2

Query: 398 GDDVSVLFCSIISAWIQYFYTATWFWTLFYAIDT------------WNTIKRRDSHTIL- 538
           G+    +FC + +  +QY +  T+      A DT             NT     +  +L 
Sbjct: 634 GETAHPMFCHVSAMILQYLFLVTFTCMSVIAYDTRRAFPQHQAPIAHNTFPSASNLRLLC 693

Query: 539 YHSFAWGLPIA 571
           Y +FAWGLP+A
Sbjct: 694 YLAFAWGLPLA 704


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,030,836
Number of Sequences: 59808
Number of extensions: 471764
Number of successful extensions: 1117
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)