Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0876
         (788 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81513-5|CAB04175.1|  332|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U39848-1|AAT81210.1| 1338|Caenorhabditis elegans Latrophilin rec...    29   5.0  
U28409-2|AAN60501.1|  288|Caenorhabditis elegans Hypothetical pr...    29   5.0  
AY314772-1|AAQ84879.1| 1338|Caenorhabditis elegans latrophilin-l...    29   5.0  
U80837-8|AAB37908.1|  412|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U64846-1|AAG24113.2|  352|Caenorhabditis elegans Serpentine rece...    28   6.6  
U13019-14|AAK84568.2|  316|Caenorhabditis elegans Serpentine rec...    28   6.6  

>Z81513-5|CAB04175.1|  332|Caenorhabditis elegans Hypothetical
           protein F26D2.4 protein.
          Length = 332

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -2

Query: 172 VKFIHNSYGHVLFTSCMMATKCLNRWISHFKKYIK*FLIFL 50
           + F  N Y +++ T     ++ + R I HF  Y+  FL FL
Sbjct: 114 ILFFENRYNYLVRTDSTSQSRKIKRVIQHFINYLLAFLAFL 154


>U39848-1|AAT81210.1| 1338|Caenorhabditis elegans Latrophilin receptor
            protein 2 protein.
          Length = 1338

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
 Frame = +2

Query: 422  CSIISAWIQYFYTATWFWTLFYAIDTW----NTIKRRDSHTILYHSFAWGLPIATTSIGL 589
            C +++  + YF+ +++ W L      +       +   +   LY+ F +G P    +I  
Sbjct: 960  CGVVAILLHYFFLSSFCWMLLEGYQLYMMLIQVFEPNRTRIFLYYLFCYGTPAVVVAISA 1019

Query: 590  SI 595
             I
Sbjct: 1020 GI 1021


>U28409-2|AAN60501.1|  288|Caenorhabditis elegans Hypothetical
           protein T25D10.5 protein.
          Length = 288

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 101 IQTFCCHHTGSKEDMAVRIMDEFN 172
           I+T  CH +  K+D  +R+ D+FN
Sbjct: 219 IETHLCHFSKMKQDQLMRLADKFN 242


>AY314772-1|AAQ84879.1| 1338|Caenorhabditis elegans latrophilin-like
            protein LAT-2 protein.
          Length = 1338

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
 Frame = +2

Query: 422  CSIISAWIQYFYTATWFWTLFYAIDTW----NTIKRRDSHTILYHSFAWGLPIATTSIGL 589
            C +++  + YF+ +++ W L      +       +   +   LY+ F +G P    +I  
Sbjct: 960  CGVVAILLHYFFLSSFCWMLLEGYQLYMMLIQVFEPNRTRIFLYYLFCYGTPAVVVAISA 1019

Query: 590  SI 595
             I
Sbjct: 1020 GI 1021


>U80837-8|AAB37908.1|  412|Caenorhabditis elegans Hypothetical
           protein F07E5.9 protein.
          Length = 412

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 347 LVRSSLWLKYKNIMPMPGDDVSVLFCSIISAWIQ 448
           +VR  +W+  KN  P P DD+S +    I A I+
Sbjct: 290 VVRRMVWMLKKNTEPKPEDDISPILIDWIVAIIK 323


>U64846-1|AAG24113.2|  352|Caenorhabditis elegans Serpentine
           receptor, class t protein3 protein.
          Length = 352

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
 Frame = +2

Query: 356 SSLWLKYKNIMPMPGDDVSVLF----CSIISAWIQYFYTATWFWTLFYAIDTWN 505
           +S+WL YK+   +    V + F      II A++QYFY+ +W   L   +  W+
Sbjct: 228 TSMWL-YKSKRQIILQGVVLCFFHGVTGIIHAYMQYFYSPSWMIVLAQIVWQWS 280


>U13019-14|AAK84568.2|  316|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 4 protein.
          Length = 316

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -2

Query: 193 YYIIRISVKFIHNSYGHVLFTSC-MMATKCLNRWISHFKKYIK*FLIF 53
           +Y+   + K + +S+  +   SC +M TK    W SH KK I   L++
Sbjct: 103 FYLYAFTAKSVIHSFLSINRASCVLMPTKYAYIWRSHMKKVIVFILLY 150


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,635,601
Number of Sequences: 27780
Number of extensions: 379846
Number of successful extensions: 873
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)