Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0876
         (788 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g38380.2 68418.m04636 expressed protein                             31   1.2  
At2g41360.1 68415.m05105 F-box family protein similar to SKP1 in...    29   3.5  
At1g34340.1 68414.m04262 esterase/lipase/thioesterase family pro...    29   4.6  
At3g56610.1 68416.m06295 expressed protein                             28   8.1  

>At5g38380.2 68418.m04636 expressed protein
          Length = 336

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 393 CLVMMSVYYSVVLFLPGYNISIQQLGFGLF 482
           C+++M + Y +   LPG+ +    LGFG+F
Sbjct: 270 CIIVMELAYEMDFSLPGFIVCCLVLGFGIF 299


>At2g41360.1 68415.m05105 F-box family protein similar to SKP1
           interacting partner 6 [Arabidopsis thaliana]
           GI:10716957; contains Pfam profile PF00646: F-box domain
          Length = 373

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
 Frame = +2

Query: 362 LWL--KYKNIMPMPGDDVSVLFCSII-SAWIQYFYTATWFWTLFYAIDTWNTIKRRDSHT 532
           LWL  K  N+  +   DV  L   +  SA  +Y+     FW   Y   + NT K  +++ 
Sbjct: 266 LWLDTKLNNVWRVVTGDVQTLHRKLYGSAMAEYYGKLAIFWRERYISTSINTTKNNNNNN 325

Query: 533 ILYHSFAWGLPIATTSIG 586
                  W   IA   +G
Sbjct: 326 KKKEEKIWSALIALNRVG 343


>At1g34340.1 68414.m04262 esterase/lipase/thioesterase family
           protein similar to late embryogenesis abundant protein
           (EMB8) GI:1350544 SP|Q40863 from (Picea glauca);
           contains Interpro entry IPR000379
           esterase/lipase/thioesterase family
          Length = 530

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = +1

Query: 523 FAYNFVSFFCLGTSYSHY*HRTVNLIY 603
           F YNFV F  LG +   Y    VNLIY
Sbjct: 39  FFYNFVEFHFLGDAILRYFRCRVNLIY 65


>At3g56610.1 68416.m06295 expressed protein 
          Length = 128

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
 Frame = -2

Query: 586 SDASSGYRKSP-SKRMIQNCMR-------ITPLDSIPCIYGIKKSPKPSCCIEILYPGR 434
           + A+SG  +SP S  ++  CM        +   D+I  I+G  +     CC+E+ + GR
Sbjct: 26  ASAASGLAQSPESDHLVNKCMAKLSSRCAMYVTDAICTIHGPMRLKHHGCCLEVFHMGR 84


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,271,250
Number of Sequences: 28952
Number of extensions: 338252
Number of successful extensions: 692
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)