Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0875
         (685 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    25   0.76 
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    24   1.0  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    23   2.3  

>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 24.6 bits (51), Expect = 0.76
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +1

Query: 58  NGQRVVFHNLVNHFDIHCLLGSWNSGWHLHYC 153
           +G RV++ + V H+ + C  G W    H   C
Sbjct: 451 HGHRVIY-STVGHWYLDCGFGPWKPSMHGGVC 481


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -3

Query: 647 FAVTRGTDRNSNFNYICDSIVHIYKSHLRANEIGTD*IRISDFP 516
           FA  + T++++    I  + +H YK  +    +GT+  R+  FP
Sbjct: 129 FAKVKLTNKSNGNGQIMLNSLHKYKPTVHLVRVGTEPRRVISFP 172


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -1

Query: 286 KIMSKLIKSSSFHHGLRAILRELN 215
           +++  L KS   HH L  ++++LN
Sbjct: 207 ELVMPLCKSCDLHHRLSKLIKQLN 230


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,377
Number of Sequences: 336
Number of extensions: 3674
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)