Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0875
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100659-7|AAC68967.1|  688|Caenorhabditis elegans Hypothetical ...    28   7.1  
AF519108-1|AAM74222.1|  909|Caenorhabditis elegans EOR-1 protein.      27   9.4  
AF502568-1|AAM74151.1|  909|Caenorhabditis elegans EOR-1 protein.      27   9.4  
AF100669-8|AAK39268.1|  909|Caenorhabditis elegans Egl-1 suppres...    27   9.4  

>AF100659-7|AAC68967.1|  688|Caenorhabditis elegans Hypothetical
           protein F58E2.4 protein.
          Length = 688

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 425 CTLQHKYRTTENKLFYLAITDHYEEREYCPLE 520
           CT +H  +  +N L    I +H E ++ C L+
Sbjct: 317 CTSEHSSKVLQNALLMKNILNHLERKDICRLQ 348


>AF519108-1|AAM74222.1|  909|Caenorhabditis elegans EOR-1 protein.
          Length = 909

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
 Frame = +2

Query: 374 LLSVLAGNFHSDMVYQCCTLQHKYRTTENKLFYLAITDHYEEREY----CPLESHLF*FN 541
           LL       H+   Y  C L  ++ T  +K FYL   +H+ E  Y    CP  S+     
Sbjct: 438 LLEKHKARHHNRNTYYMCHLC-EFETNWSKQFYLHCAEHWTEIPYRCETCPFTSNE--IQ 494

Query: 542 QYLSHLL 562
           ++L+H L
Sbjct: 495 EFLTHRL 501


>AF502568-1|AAM74151.1|  909|Caenorhabditis elegans EOR-1 protein.
          Length = 909

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
 Frame = +2

Query: 374 LLSVLAGNFHSDMVYQCCTLQHKYRTTENKLFYLAITDHYEEREY----CPLESHLF*FN 541
           LL       H+   Y  C L  ++ T  +K FYL   +H+ E  Y    CP  S+     
Sbjct: 438 LLEKHKARHHNRNTYYMCHLC-EFETNWSKQFYLHCAEHWTEIPYRCETCPFTSNE--IQ 494

Query: 542 QYLSHLL 562
           ++L+H L
Sbjct: 495 EFLTHRL 501


>AF100669-8|AAK39268.1|  909|Caenorhabditis elegans Egl-1
           suppressor/dio uptake defective/raf enhancer protein 1
           protein.
          Length = 909

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
 Frame = +2

Query: 374 LLSVLAGNFHSDMVYQCCTLQHKYRTTENKLFYLAITDHYEEREY----CPLESHLF*FN 541
           LL       H+   Y  C L  ++ T  +K FYL   +H+ E  Y    CP  S+     
Sbjct: 438 LLEKHKARHHNRNTYYMCHLC-EFETNWSKQFYLHCAEHWTEIPYRCETCPFTSNE--IQ 494

Query: 542 QYLSHLL 562
           ++L+H L
Sbjct: 495 EFLTHRL 501


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,555,470
Number of Sequences: 27780
Number of extensions: 334650
Number of successful extensions: 729
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)