Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0874
(486 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70310-1|CAA94366.1| 552|Caenorhabditis elegans Hypothetical pr... 27 5.5
U41019-1|AAM51510.1| 542|Caenorhabditis elegans Hypothetical pr... 27 5.5
U64833-8|AAB04820.1| 432|Caenorhabditis elegans Hypothetical pr... 27 7.2
U53180-1|AAK68285.1| 492|Caenorhabditis elegans Hypothetical pr... 27 7.2
U08022-1|AAA17722.1| 515|Caenorhabditis elegans STE12 transcrip... 27 9.5
AL110501-6|CAH19094.1| 466|Caenorhabditis elegans Hypothetical ... 27 9.5
AL110501-5|CAB54505.1| 552|Caenorhabditis elegans Hypothetical ... 27 9.5
AF083226-1|AAD03684.1| 560|Caenorhabditis elegans nuclear recep... 27 9.5
AF036702-12|AAP31437.1| 559|Caenorhabditis elegans Nuclear horm... 27 9.5
AF036702-11|AAP31436.1| 560|Caenorhabditis elegans Nuclear horm... 27 9.5
AC006620-3|AAF39779.2| 579|Caenorhabditis elegans Hypothetical ... 27 9.5
>Z70310-1|CAA94366.1| 552|Caenorhabditis elegans Hypothetical
protein R11A8.1 protein.
Length = 552
Score = 27.5 bits (58), Expect = 5.5
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Frame = -3
Query: 244 KVRREYPDTAANAVLFA---FRT--ISPFYRIPWNSNAQAEKKTLPGP 116
K+ +E D A N + FR I+PF P+ +N Q + +PGP
Sbjct: 435 KIEKEIADVAENQIRRIEENFRNPFIAPFAFFPYQNNFQMAPQNVPGP 482
>U41019-1|AAM51510.1| 542|Caenorhabditis elegans Hypothetical
protein C04E7.4 protein.
Length = 542
Score = 27.5 bits (58), Expect = 5.5
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -1
Query: 228 IRTPPQMRCSSRSEPYLPSIGFHGT 154
I T Q + SS +P+LP++GF GT
Sbjct: 299 IVTISQGKASSLYDPHLPTVGFDGT 323
>U64833-8|AAB04820.1| 432|Caenorhabditis elegans Hypothetical
protein B0507.3 protein.
Length = 432
Score = 27.1 bits (57), Expect = 7.2
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = -1
Query: 453 PGTGRIRFPSKPDTPRSSEPILIPKLRI 370
P ++ SKP TP + P+L+P++ +
Sbjct: 324 PNPAMVQKSSKPSTPIPAPPVLVPQVEL 351
>U53180-1|AAK68285.1| 492|Caenorhabditis elegans Hypothetical
protein D1014.7 protein.
Length = 492
Score = 27.1 bits (57), Expect = 7.2
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -1
Query: 249 FSRSAESIRTPPQMRCSSRSEP--YLPSIGFHGTRT 148
FS S E+ T Q R + S P YLPSIG + T T
Sbjct: 11 FSASNENNETIKQGRDADSSSPSEYLPSIGHYFTHT 46
>U08022-1|AAA17722.1| 515|Caenorhabditis elegans STE12
transcriptional activator protein.
Length = 515
Score = 26.6 bits (56), Expect = 9.5
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Frame = +2
Query: 5 PVPIPEPGSGTVSIIVPSSLKT---SVRRGNPXWPEDAAERS 121
P P PE SGT + S + T +V + PEDAAE S
Sbjct: 355 PTPAPEAASGTAD-VTASPINTAFPAVVTSSTPMPEDAAEVS 395
>AL110501-6|CAH19094.1| 466|Caenorhabditis elegans Hypothetical
protein Y79H2A.1b protein.
Length = 466
Score = 26.6 bits (56), Expect = 9.5
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Frame = +2
Query: 5 PVPIPEPGSGTVSIIVPSSLKT---SVRRGNPXWPEDAAERS 121
P P PE SGT + S + T +V + PEDAAE S
Sbjct: 306 PTPAPEAASGTAD-VTASPINTAFPAVVTSSTPMPEDAAEVS 346
>AL110501-5|CAB54505.1| 552|Caenorhabditis elegans Hypothetical
protein Y79H2A.1a protein.
Length = 552
Score = 26.6 bits (56), Expect = 9.5
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Frame = +2
Query: 5 PVPIPEPGSGTVSIIVPSSLKT---SVRRGNPXWPEDAAERS 121
P P PE SGT + S + T +V + PEDAAE S
Sbjct: 392 PTPAPEAASGTAD-VTASPINTAFPAVVTSSTPMPEDAAEVS 432
>AF083226-1|AAD03684.1| 560|Caenorhabditis elegans nuclear receptor
NHR-8 protein.
Length = 560
Score = 26.6 bits (56), Expect = 9.5
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +2
Query: 224 RILSADLENSGEGCTWRCRAGSYPYPQQVS 313
++++ E S + CT +C+ G YP Q+++
Sbjct: 149 KLINKANEKSKDRCTCKCQCGFYPITQRLT 178
>AF036702-12|AAP31437.1| 559|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 8, isoform b protein.
Length = 559
Score = 26.6 bits (56), Expect = 9.5
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +2
Query: 224 RILSADLENSGEGCTWRCRAGSYPYPQQVS 313
++++ E S + CT +C+ G YP Q+++
Sbjct: 149 KLINKANEKSKDRCTCKCQCGFYPITQRLT 178
>AF036702-11|AAP31436.1| 560|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 8, isoform a protein.
Length = 560
Score = 26.6 bits (56), Expect = 9.5
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +2
Query: 224 RILSADLENSGEGCTWRCRAGSYPYPQQVS 313
++++ E S + CT +C+ G YP Q+++
Sbjct: 149 KLINKANEKSKDRCTCKCQCGFYPITQRLT 178
>AC006620-3|AAF39779.2| 579|Caenorhabditis elegans Hypothetical
protein C51G7.4 protein.
Length = 579
Score = 26.6 bits (56), Expect = 9.5
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Frame = +2
Query: 5 PVPIPEPGSGTVSIIVPSSLKT---SVRRGNPXWPEDAAERS 121
P P PE SGT + S + T +V + PEDAAE S
Sbjct: 419 PTPAPEAASGTAD-VTASPINTAFPAVVTSSTPMPEDAAEVS 459
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,968,186
Number of Sequences: 27780
Number of extensions: 260516
Number of successful extensions: 891
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -