Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0874
(486 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g07220.1 68414.m00768 expressed protein 40 7e-04
At1g76965.1 68414.m08961 glycine-rich protein 29 1.3
At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to ... 29 2.2
At2g19150.1 68415.m02235 pectinesterase family protein contains ... 29 2.2
At1g10390.1 68414.m01171 nucleoporin family protein contains Pfa... 29 2.2
At3g56510.1 68416.m06284 TBP-binding protein, putative similar t... 28 2.9
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox... 28 2.9
At5g22390.1 68418.m02612 expressed protein 27 5.1
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical... 27 5.1
At1g75510.1 68414.m08774 transcription initiation factor IIF bet... 27 6.7
At5g42370.1 68418.m05159 expressed protein 27 8.9
At4g39970.1 68417.m05661 haloacid dehalogenase-like hydrolase fa... 27 8.9
At3g02270.1 68416.m00208 eIF4-gamma/eIF5/eIF2-epsilon domain-con... 27 8.9
At2g03890.2 68415.m00352 phosphatidylinositol 3- and 4-kinase fa... 27 8.9
At2g03890.1 68415.m00351 phosphatidylinositol 3- and 4-kinase fa... 27 8.9
At1g50410.1 68414.m05650 SNF2 domain-containing protein / helica... 27 8.9
>At1g07220.1 68414.m00768 expressed protein
Length = 507
Score = 40.3 bits (90), Expect = 7e-04
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Frame = -1
Query: 441 RIRFPSKPDTPRSSEPILIPKLRIQFADFP-YLHYSID*RLFTLETCCGYGYEPARHLHV 265
R+R P K +PRS +L+ L + F F L Y +D + +T G+ EP H+
Sbjct: 6 RLRLPHK-SSPRSPSYLLLCVLALSFFSFTALLFYKVDDFIAQTKTLAGHNLEPTPW-HI 63
Query: 264 HPSPEFSRSAESIRTPPQMRCSSRSEPY 181
P FS + + + ++CS S PY
Sbjct: 64 FPRKSFSAATKHSQAYRILQCSYFSCPY 91
>At1g76965.1 68414.m08961 glycine-rich protein
Length = 158
Score = 29.5 bits (63), Expect = 1.3
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 453 PGTGRIRFPSKPDTPRSSEPILIPKLRIQFAD 358
PG + FP KP+ P P +P+L + F D
Sbjct: 93 PGAAIVVFPKKPEEPVKVVPTPMPQLNLFFGD 124
>At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to
autophagy 7 [Arabidopsis thaliana] GI:19912147; contains
Pfam profile PF00899: ThiF family
Length = 697
Score = 28.7 bits (61), Expect = 2.2
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -2
Query: 239 PQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRR 105
P ++G CG +V NH++LL +S+ L+ ++S +R +
Sbjct: 42 PISITGFYGPCGHPQVSNHLTLLSESLPLDEQSLIASTSHGNRNK 86
>At2g19150.1 68415.m02235 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 339
Score = 28.7 bits (61), Expect = 2.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 209 ICGGVRILSADLENSGEGCTWRCRAGSYPYPQQV 310
I GG+ + ++ EGCT + R G YP P +V
Sbjct: 185 ISGGIDFIFGGAQSIFEGCTLKLRVGIYP-PNEV 217
>At1g10390.1 68414.m01171 nucleoporin family protein contains Pfam
profiles: PF04096 nucleoporin autopeptidase, PF03093
nucleoporin FG repeat family
Length = 1041
Score = 28.7 bits (61), Expect = 2.2
Identities = 28/105 (26%), Positives = 40/105 (38%), Gaps = 5/105 (4%)
Frame = -1
Query: 300 GYGYEPARHLHVHPSPEFSRSAESIRTPPQMRCSSRS-EPYLPSI--GFHGTRTLRQKRK 130
G+G P++ PSP F +++ + P S+ P P+I GT T
Sbjct: 410 GFGISPSQPNPFSPSPAFGQTSANPTNPFSSSTSTNPFAPQTPTIASSSFGTATSNFGSS 469
Query: 129 LFPDLSAASSGXXGLPRRTLVFKDEGTIIETVPLP--GSGIGTGF 1
F S+++ G T VF T P P GS GF
Sbjct: 470 PFGVTSSSNLFGSGSSTTTSVFGSSSAFGTTTPSPLFGSSSTPGF 514
>At3g56510.1 68416.m06284 TBP-binding protein, putative similar to
TBP-binding protein ABT1 GI:6518527 from [Mus musculus]
Length = 257
Score = 28.3 bits (60), Expect = 2.9
Identities = 17/68 (25%), Positives = 28/68 (41%)
Frame = -3
Query: 205 VLFAFRTISPFYRIPWNSNAQAEKKTLPGPLGGVFRPXWVTPSNTRF*RRGNDY*NGSAA 26
+L + + Y P +S AQ +K G G F WV + +R D NG
Sbjct: 69 ILAQYGELGRIYLAPEDSEAQVHRKRAGGFRGQRFSEGWVEFAKKSVAKRVADMLNGEQI 128
Query: 25 GFRNRNRI 2
G + ++ +
Sbjct: 129 GGKKKSSV 136
>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
[Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
thaliana]
Length = 926
Score = 28.3 bits (60), Expect = 2.9
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 234 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQK 136
+S + P R ++PYLPS G RTLR+K
Sbjct: 215 QSQKDHPSKRILFTNQPYLPSETPSGLRTLREK 247
>At5g22390.1 68418.m02612 expressed protein
Length = 202
Score = 27.5 bits (58), Expect = 5.1
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 113 ERSGKSFLFCLSVRVPWNPIEG 178
+ S KSFL LS PWNP +G
Sbjct: 17 DNSPKSFLDTLSSSSPWNPSKG 38
>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
DNA Helicase [Arabidopsis thaliana] GI:11121449
Length = 1188
Score = 27.5 bits (58), Expect = 5.1
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -1
Query: 276 HLHVHPSPEFSRSAESIRTPPQMRCSSRSE 187
H H +P+ S S S+RTPP R +SR E
Sbjct: 229 HYHSTSTPQPSVSNFSLRTPPVDRSASRLE 258
>At1g75510.1 68414.m08774 transcription initiation factor IIF beta
subunit (TFIIF-beta) family protein contains Pfam
profile: PF02270 transcription initiation factor IIF,
beta subunit
Length = 261
Score = 27.1 bits (57), Expect = 6.7
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Frame = +2
Query: 344 CR*GKSANWIRNFGIRIGSEDRGVSGLDGKRMRPVPGLV----NNIKKKKK 484
CR S ++N I++ DRGV MRP+PG++ +N K+K+K
Sbjct: 131 CRERTSKAMVKNRQIQVIDNDRGV------HMRPMPGMLGLVSSNSKEKRK 175
>At5g42370.1 68418.m05159 expressed protein
Length = 447
Score = 26.6 bits (56), Expect = 8.9
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -3
Query: 178 PFYRIPWNSNAQAEKKTLPGPLGGVFR-PXWVTPSNTR 68
P Y + + Q+ +K +P PL + R W TPS R
Sbjct: 285 PLYDVTSSGLVQSVEKVVPRPLRSIVRLLFWYTPSTMR 322
>At4g39970.1 68417.m05661 haloacid dehalogenase-like hydrolase
family protein low similarity to SP|P95649 CbbY protein
{Rhodobacter sphaeroides}
Length = 316
Score = 26.6 bits (56), Expect = 8.9
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = -1
Query: 171 IGFHGTRTLRQKRKLFPDLSAASSGXXGLPRRT---LVFKDEGTIIET 37
IGF +TLR K + S SS LP R+ L+F +G I+E+
Sbjct: 30 IGFPRFQTLRFKSRSVYSKSRVSSPVSALPLRSLEALIFDCDGVILES 77
>At3g02270.1 68416.m00208 eIF4-gamma/eIF5/eIF2-epsilon
domain-containing protein similar to SP|Q13144
Translation initiation factor eIF-2B epsilon subunit
(eIF-2B GDP-GTP exchange factor) {Homo sapiens};
contains Pfam profile PF02020:
eIF4-gamma/eIF5/eIF2-epsilon
Length = 676
Score = 26.6 bits (56), Expect = 8.9
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -1
Query: 195 RSEPYLPSIGFHGTRTLRQKRK 130
R+ PY+P + F G RTL+ +R+
Sbjct: 288 RTFPYVPDMKFSGNRTLKLERQ 309
>At2g03890.2 68415.m00352 phosphatidylinositol 3- and 4-kinase
family protein low similarity to phosphatidylinositol
4-kinase type-II beta [Homo sapiens] GI:20159767;
contains Pfam profile PF00454: Phosphatidylinositol 3-
and 4-kinase
Length = 530
Score = 26.6 bits (56), Expect = 8.9
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = -2
Query: 161 MELERSGRKENSSRTSRRRLQAXLGYPVEHSFLKTRERLL 42
MEL+RS ++ T +RRLQ L +P E S L + +L
Sbjct: 60 MELDRS----DNVHTVKRRLQIALNFPTEESSLTYGDMVL 95
>At2g03890.1 68415.m00351 phosphatidylinositol 3- and 4-kinase
family protein low similarity to phosphatidylinositol
4-kinase type-II beta [Homo sapiens] GI:20159767;
contains Pfam profile PF00454: Phosphatidylinositol 3-
and 4-kinase
Length = 650
Score = 26.6 bits (56), Expect = 8.9
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = -2
Query: 161 MELERSGRKENSSRTSRRRLQAXLGYPVEHSFLKTRERLL 42
MEL+RS ++ T +RRLQ L +P E S L + +L
Sbjct: 60 MELDRS----DNVHTVKRRLQIALNFPTEESSLTYGDMVL 95
>At1g50410.1 68414.m05650 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 981
Score = 26.6 bits (56), Expect = 8.9
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -2
Query: 341 ILSTRGSSPWRPAADMGTNRRDISTYIPHLNFQGPQRVSGHRR 213
I TR P G++RRD+ST PH +GH +
Sbjct: 15 IQETRTRPQHPPRIAEGSHRRDLSTLRPHFLSGSSSGANGHTK 57
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,516,473
Number of Sequences: 28952
Number of extensions: 253970
Number of successful extensions: 788
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 838967680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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