Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0873
(708 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0579 + 18949742-18949909,18951483-18951563,18951762-18952103 31 0.90
02_02_0395 - 9733499-9733756 29 2.7
12_02_0789 + 23164489-23164746 29 3.6
08_01_0694 - 6136025-6136749,6137425-6137971 29 3.6
06_03_0345 + 19758188-19758382,19759857-19759952,19760061-197601... 29 4.8
04_03_0809 + 19896801-19897170,19897265-19897513,19897850-198979... 29 4.8
02_01_0733 - 5477110-5477421,5478146-5478166 28 6.3
12_02_0405 - 18635503-18635871,18636703-18636817,18636970-186377... 28 8.4
09_04_0249 + 16070331-16070828 28 8.4
04_03_0152 + 11913917-11914328,11914391-11914507,11915424-11915587 28 8.4
>08_02_0579 + 18949742-18949909,18951483-18951563,18951762-18952103
Length = 196
Score = 31.1 bits (67), Expect = 0.90
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +1
Query: 388 CGDSTCIERGLFCNGEKDCGD-GSDENSCDIDND 486
CGD+ C G+FC G D S+++S D+ +D
Sbjct: 157 CGDTGCFADGIFCPGNGDSDPAASNDSSVDMHSD 190
>02_02_0395 - 9733499-9733756
Length = 85
Score = 29.5 bits (63), Expect = 2.7
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Frame = +1
Query: 439 DCGDGSDENSCDI--DNDPNRAPPCDSSQCVL---PDCFCSEDGTVDPRQLT 579
D D SDE +CD+ D RAP D+ +L P EDG VD + T
Sbjct: 31 DIPDNSDEMACDVAGAGDALRAPSSDAPAGILLEQPADEFEEDGNVDESERT 82
>12_02_0789 + 23164489-23164746
Length = 85
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Frame = +1
Query: 439 DCGDGSDENSCDI--DNDPNRAPPCDSSQCVLPDCFC---SEDGTVDPRQLT 579
D D SDE +CD+ D RAP D+ +L + EDG VD + T
Sbjct: 31 DVPDNSDEMACDVAGAGDALRAPSSDAPAGILLEQLADEFEEDGNVDESERT 82
>08_01_0694 - 6136025-6136749,6137425-6137971
Length = 423
Score = 29.1 bits (62), Expect = 3.6
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Frame = -1
Query: 654 LYNSMLLLLIASSKVIVI-I*GTSLAGKLPGI----NCAVLGAEAVRKDTLRGIAWRSSI 490
L S +L + S V++I I ++A KLP + N +A + G AWRS++
Sbjct: 204 LRKSAILYFVVSIVVMIICIVCYNVADKLPVVIYYKNIKKRAQKAEEDGGMSGSAWRSTL 263
Query: 489 WVVVNITRIFIRSIATVLFAVT 424
W +V + IA +++A+T
Sbjct: 264 WSIVGRVKWHGIGIA-LIYAIT 284
>06_03_0345 +
19758188-19758382,19759857-19759952,19760061-19760144,
19760504-19760573,19760934-19761838,19763661-19764287
Length = 658
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +1
Query: 316 KNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDP 489
+ +ER+ L E +G ++C ST G+K+ DG D+ D +P
Sbjct: 441 RGEERRGVDKLRCHEEFVTEGHISCSVSTDDSDSSTSKGDKNAKDGKDKGDKDKSEEP 498
>04_03_0809 +
19896801-19897170,19897265-19897513,19897850-19897900,
19898007-19898267,19898427-19898479,19898746-19898887,
19898972-19899226,19899616-19900640
Length = 801
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = -1
Query: 471 TRIFIRSIATVLFAVTEKTAFNASRVAASEEAILTEWFFSVQERLYFTLLVLELTIFHSI 292
T++ + S+A +LF + F +V + I++ WF + + L+V E+TI +
Sbjct: 224 TQVVLISVA-ILFMLFSVQRFGTDKVGYTFAPIISVWFLLIAGIGLYNLVVHEITILKAF 282
Query: 291 FP 286
P
Sbjct: 283 NP 284
>02_01_0733 - 5477110-5477421,5478146-5478166
Length = 110
Score = 28.3 bits (60), Expect = 6.3
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Frame = +1
Query: 286 WKDAVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFC--NGEKDCGDGSD 459
W +K+ K + R+ L Y C D LA GD TC R L +G D DG
Sbjct: 34 WTVRLKHTKGRRPRRERAVLRYGWHRFCADNGLAVGD-TCFFRALRSAGSGAGDVDDGDG 92
Query: 460 EN 465
++
Sbjct: 93 DH 94
>12_02_0405 -
18635503-18635871,18636703-18636817,18636970-18637721,
18638540-18638542
Length = 412
Score = 27.9 bits (59), Expect = 8.4
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Frame = +1
Query: 286 WKDAVKNCKLKNKERKIKPLLYTEEPLCQ--DGFL---ACGDSTCIERGLFCNGEKDCGD 450
W+D V + + + R+ KPL++ ++ + FL GD LF E+D D
Sbjct: 59 WRDVVDEVEPEVQRRRAKPLVFFKDGRYEPASAFLLHDVAGDCDVTSLSLFREEEED-DD 117
Query: 451 GSDENSCDIDNDPNRAPPCDSSQCV 525
G D + N+ + C+ C+
Sbjct: 118 GGDRDFFARYNNDDMVGSCNGLICL 142
>09_04_0249 + 16070331-16070828
Length = 165
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = -2
Query: 584 WRVSCRGSTVPSSEQKQSGRTHCEESHGGALFG 486
W S R S PS +G T SHGG G
Sbjct: 16 WHSSSRISRTPSGCSASAGSTSARSSHGGGRVG 48
>04_03_0152 + 11913917-11914328,11914391-11914507,11915424-11915587
Length = 230
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = +2
Query: 77 DGGDKLTRRQRKMKAWNKNY-ARTRTPANGSGW---WPARATTVATSSSVLP 220
D G T+R RK +AW ++ A P G W + + + ++ S+ LP
Sbjct: 60 DDGSYRTKRSRKYEAWRVDFDAGILVPVKGFNWRALFISMSRAISVSAETLP 111
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,582,594
Number of Sequences: 37544
Number of extensions: 444124
Number of successful extensions: 1505
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1504
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -