Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0873
(708 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47789| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-34) 55 5e-08
SB_50311| Best HMM Match : Ldl_recept_a (HMM E-Value=3.4e-20) 55 6e-08
SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26) 54 1e-07
SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25) 54 1e-07
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 52 3e-07
SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45) 52 5e-07
SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0) 49 3e-06
SB_5319| Best HMM Match : Ldl_recept_a (HMM E-Value=7.56701e-44) 49 3e-06
SB_6273| Best HMM Match : MAM (HMM E-Value=0) 48 6e-06
SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 1e-05
SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 46 2e-05
SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08) 45 5e-05
SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 5e-05
SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 5e-05
SB_29580| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-38) 44 9e-05
SB_10498| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-07) 44 1e-04
SB_35350| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 2e-04
SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17) 43 3e-04
SB_40871| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_21487| Best HMM Match : MAM (HMM E-Value=0) 41 0.001
SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34) 41 0.001
SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_23898| Best HMM Match : Ldl_recept_a (HMM E-Value=1.4013e-45) 41 0.001
SB_31927| Best HMM Match : Ldl_recept_a (HMM E-Value=2.3e-27) 40 0.001
SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_45605| Best HMM Match : MAM (HMM E-Value=2.1e-16) 40 0.002
SB_13199| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.005
SB_55149| Best HMM Match : Ldl_recept_a (HMM E-Value=2.6e-23) 38 0.006
SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_33423| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-22) 38 0.011
SB_19614| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.014
SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32) 37 0.014
SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.018
SB_43823| Best HMM Match : MAM (HMM E-Value=0) 37 0.018
SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24) 37 0.018
SB_43556| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-11) 36 0.024
SB_43832| Best HMM Match : CBM_14 (HMM E-Value=2.8e-16) 36 0.032
SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.032
SB_18178| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.043
SB_2014| Best HMM Match : MAM (HMM E-Value=0) 36 0.043
SB_13694| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.043
SB_18810| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.074
SB_3253| Best HMM Match : Ldl_recept_a (HMM E-Value=0.00064) 34 0.098
SB_58073| Best HMM Match : CBM_14 (HMM E-Value=1.4e-17) 34 0.13
SB_1784| Best HMM Match : CBM_14 (HMM E-Value=7e-18) 33 0.23
SB_52148| Best HMM Match : EGF (HMM E-Value=0) 33 0.30
SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.30
SB_28040| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.30
SB_22727| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.30
SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29) 32 0.40
SB_27119| Best HMM Match : CBM_14 (HMM E-Value=4.1e-15) 32 0.40
SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14) 32 0.40
SB_8478| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.52
SB_20531| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.69
SB_17635| Best HMM Match : CUB (HMM E-Value=0) 31 0.69
SB_22922| Best HMM Match : DUF1599 (HMM E-Value=4.2) 31 0.92
SB_9656| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-23) 31 1.2
SB_52147| Best HMM Match : EGF (HMM E-Value=0) 31 1.2
SB_16878| Best HMM Match : Keratin_B2 (HMM E-Value=0.19) 31 1.2
SB_34641| Best HMM Match : Mucin (HMM E-Value=4.3) 30 1.6
SB_50139| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_54415| Best HMM Match : TSP_1 (HMM E-Value=6.8e-21) 30 2.1
SB_32130| Best HMM Match : TSP_1 (HMM E-Value=0) 30 2.1
SB_14947| Best HMM Match : TSP_1 (HMM E-Value=6.8e-21) 30 2.1
SB_5403| Best HMM Match : TSP_1 (HMM E-Value=0) 30 2.1
SB_33807| Best HMM Match : RNA_pol (HMM E-Value=2.7e-10) 29 2.8
SB_53888| Best HMM Match : TSP_3 (HMM E-Value=9.2e-11) 29 2.8
SB_41869| Best HMM Match : Laminin_EGF (HMM E-Value=9.7e-23) 29 2.8
SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0) 29 2.8
SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07) 29 3.7
SB_50149| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_24771| Best HMM Match : RVT_1 (HMM E-Value=0) 28 6.5
SB_21439| Best HMM Match : LicD (HMM E-Value=4.5e-08) 28 6.5
SB_3455| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_55039| Best HMM Match : MFS_1 (HMM E-Value=5.3) 28 8.5
SB_8216| Best HMM Match : Metallothio_2 (HMM E-Value=0.71) 28 8.5
>SB_47789| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-34)
Length = 262
Score = 55.2 bits (127), Expect = 5e-08
Identities = 25/82 (30%), Positives = 35/82 (42%)
Frame = +1
Query: 307 CKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDND 486
C+ +N E + T C G CG+ CI C+ + DCGD SDEN+C
Sbjct: 168 CRCQNGEVLVNGQCKTLSGTCAPGQFKCGNGKCIPSSWKCDHDNDCGDNSDENNCPYSTC 227
Query: 487 PNRAPPCDSSQCVLPDCFCSED 552
CD+ +C+ C D
Sbjct: 228 NPSQFKCDNGRCISSKWRCDHD 249
Score = 34.7 bits (76), Expect = 0.074
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +1
Query: 367 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 471
C C + CI C+ + DCGD SDE +C
Sbjct: 227 CNPSQFKCDNGRCISSKWRCDHDNDCGDMSDERNC 261
>SB_50311| Best HMM Match : Ldl_recept_a (HMM E-Value=3.4e-20)
Length = 772
Score = 54.8 bits (126), Expect = 6e-08
Identities = 28/90 (31%), Positives = 41/90 (45%)
Frame = +1
Query: 295 AVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCD 474
A+ N + + IKP C G C + CI + L+C+G+ C DGSDE C+
Sbjct: 67 AIANVSITTRSCAIKPTFSFPGHSCGSGEFQCDNGKCIRKNLYCDGDFACVDGSDETRCE 126
Query: 475 IDNDPNRAPPCDSSQCVLPDCFCSEDGTVD 564
P+ C S +C++ C DG D
Sbjct: 127 C---PSNMFLCPSGECIMGTQLC--DGKKD 151
Score = 36.7 bits (81), Expect = 0.018
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +1
Query: 367 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 471
C C CI C+G+KDC D +DE +C
Sbjct: 127 CPSNMFLCPSGECIMGTQLCDGKKDCTDNTDEKNC 161
>SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26)
Length = 351
Score = 54.0 bits (124), Expect = 1e-07
Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Frame = +1
Query: 367 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSSQCVLPDCFCS 546
C+ C D C+ FCNGE DC DGSDE SC DN + C CV C+
Sbjct: 74 CRSAEFKCPDGKCVHPSKFCNGESDCTDGSDEWSC--DNSCSSRHACADGTCVTWSLTCN 131
Query: 547 -----EDGTVDPR 570
+DG+ +P+
Sbjct: 132 GVSDCQDGSDEPK 144
Score = 46.0 bits (104), Expect = 3e-05
Identities = 20/40 (50%), Positives = 22/40 (55%)
Frame = +1
Query: 385 ACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPP 504
AC D TC+ L CNG DC DGSDE +D R PP
Sbjct: 117 ACADGTCVTWSLTCNGVSDCQDGSDEPKLCGKHDTMRPPP 156
Score = 38.7 bits (86), Expect = 0.005
Identities = 21/83 (25%), Positives = 36/83 (43%)
Frame = +1
Query: 298 VKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDI 477
V +L + ++PL C C + C+ + + C+G+ C D SDE +C
Sbjct: 15 VSRIRLTTESCHMQPLHAHPSHSCHGDQFQCLNGMCVGQEVRCDGDYACVDHSDERNCAC 74
Query: 478 DNDPNRAPPCDSSQCVLPDCFCS 546
+ + C +CV P FC+
Sbjct: 75 RSAEFK---CPDGKCVHPSKFCN 94
>SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)
Length = 147
Score = 54.0 bits (124), Expect = 1e-07
Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Frame = +1
Query: 367 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSSQCVLPDCFCS 546
C+ C D C+ FCNGE DC DGSDE SC DN + C CV C+
Sbjct: 74 CRSAEFKCPDGKCVHPSKFCNGESDCTDGSDEWSC--DNSCSSRHACADGTCVTWSLTCN 131
Query: 547 -----EDGTVDPR 570
+DG+ +P+
Sbjct: 132 GVSDCQDGSDEPK 144
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/83 (26%), Positives = 36/83 (43%)
Frame = +1
Query: 298 VKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDI 477
V +L + ++PL C C + C+ + L C+G+ C D SDE +C
Sbjct: 15 VSRIRLTTESCHMQPLHAHPSHSCHGDQFQCLNGMCVGQELRCDGDYACVDHSDERNCAC 74
Query: 478 DNDPNRAPPCDSSQCVLPDCFCS 546
+ + C +CV P FC+
Sbjct: 75 RSAEFK---CPDGKCVHPSKFCN 94
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 52.4 bits (120), Expect = 3e-07
Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +1
Query: 367 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSSQCVLPDCFCS 546
C+ G +C + CI C+ E DCGD SDE C P C + +CV D C
Sbjct: 2209 CEPGHFSCNNGRCINAKWVCDRENDCGDNSDEARCPEVTCPAHEFTCPNGRCVSYDFLC- 2267
Query: 547 EDGTVDPRQLTRQ-RCP 594
DG D + + RCP
Sbjct: 2268 -DGEDDCGDFSDELRCP 2283
Score = 51.6 bits (118), Expect = 6e-07
Identities = 24/66 (36%), Positives = 27/66 (40%)
Frame = +1
Query: 355 EEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSSQCVLPD 534
E C C TCI R C+ + DCGDGSDE C PN C S C+
Sbjct: 2453 ERATCDVTQFRCKTGTCITREWRCDHQDDCGDGSDEQQCVNYTCPNHTFKCTSGHCIANS 2512
Query: 535 CFCSED 552
C D
Sbjct: 2513 SVCDGD 2518
Score = 49.2 bits (112), Expect = 3e-06
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Frame = +1
Query: 367 CQDGFLACGDST-CIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPC-DSSQCVLPDCF 540
C+ AC + CI+R C+GE DCGD SDE C +++ N C ++S+C+
Sbjct: 1087 CKPFEFACANGRHCIQRKWICDGENDCGDRSDEVDCGLESCGNDRWRCSNTSRCIAKSQV 1146
Query: 541 CSEDGTVD 564
C DG VD
Sbjct: 1147 C--DGRVD 1152
Score = 47.2 bits (107), Expect = 1e-05
Identities = 41/147 (27%), Positives = 57/147 (38%), Gaps = 10/147 (6%)
Frame = +1
Query: 181 EGDN-CRDVIQCTASGIQAIRCPAGLFFDIEKQTC---DWK-DAVKNCKLKNKERKIKPL 345
+GDN C D A G + CPAG + C +W+ D +C+ + E +
Sbjct: 3066 DGDNDCGDSSDEKA-GECHVTCPAGQARCATGRRCIPSEWRCDGESDCEDGSDENSAQCT 3124
Query: 346 LYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSSQCV 525
T + F D CI C+GE DC DGSDE C C S +C+
Sbjct: 3125 AIT---CSAETFRCYSDRRCIPNQWKCDGESDCNDGSDEKGCPPKQCAKHQYRCASGRCI 3181
Query: 526 LPDCFCSE-----DGTVDPRQLTRQRC 591
C DG+ D +Q + C
Sbjct: 3182 SASWVCDHVNDCGDGS-DEQQCINRTC 3207
Score = 46.8 bits (106), Expect = 2e-05
Identities = 20/62 (32%), Positives = 27/62 (43%)
Frame = +1
Query: 367 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSSQCVLPDCFCS 546
C C + C+ R C+G DC DGSDE +C + C S +C+ D C
Sbjct: 3007 CAPYHFRCDNFRCVYRSRVCDGIDDCRDGSDERNCHVTTCTADQFRCPSGRCISRDWLCD 3066
Query: 547 ED 552
D
Sbjct: 3067 GD 3068
Score = 46.4 bits (105), Expect = 2e-05
Identities = 28/86 (32%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Frame = +1
Query: 367 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSSQCVLPDCFCS 546
C DG +C D CI R C+G DC D SDE P R C + CV C
Sbjct: 3207 CADGQFSCDDGLCIARAWKCDGMMDCADASDEKGSGHRWCPQRLYQCINHVCVDRRWLCD 3266
Query: 547 E-----DGTVDPRQLTRQRCPSNDHY 609
+ D + + R L R N H+
Sbjct: 3267 DMDDCGDYSDELRLLCRYSICRNSHF 3292
Score = 42.7 bits (96), Expect = 3e-04
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Frame = +1
Query: 367 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDN---DPNRAPPCDSSQCVLPDC 537
C AC C+ + C+G+ DC DGSDE+S + +P C++ +C+
Sbjct: 2168 CASSEFACESGQCVRKSFVCDGDNDCHDGSDESSLVCASWTCEPGHF-SCNNGRCINAKW 2226
Query: 538 FCSEDGTVDPRQLTRQRCP 594
C + RCP
Sbjct: 2227 VCDRENDCGDNS-DEARCP 2244
Score = 42.3 bits (95), Expect = 4e-04
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +1
Query: 367 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDE-NSCDID-NDPNRAPPCDSSQCV 525
C + C + CI R C+GE DCGDGSDE +SC + P D+ +C+
Sbjct: 2926 CTNNDFMCDNYRCISRLWRCDGEDDCGDGSDEPDSCPVRVCKPGTYQCADNRKCI 2980
Score = 41.9 bits (94), Expect = 5e-04
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +1
Query: 367 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDI 477
C + C CI C+G+ DC DGSDE CD+
Sbjct: 2496 CPNHTFKCTSGHCIANSSVCDGDTDCADGSDEKDCDL 2532
Score = 41.5 bits (93), Expect = 6e-04
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +1
Query: 367 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDE-NSCDID-NDPNRAPPCDSSQCVLPDCF 540
C C + CI + C+GE DCGD SDE ++C DP C + +C+
Sbjct: 47 CPPTKFLCANGMCIPKSAVCDGENDCGDMSDEPSNCSAHICDPKLEFQCANGRCINKKWR 106
Query: 541 CSEDGTVD 564
C DG D
Sbjct: 107 C--DGMKD 112
Score = 41.5 bits (93), Expect = 6e-04
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +1
Query: 388 CGDSTCIERGLFCNGEKDCGDGSDENSCDIDN-DPNRAPPCDSSQCVLPDCFCSEDGTVD 564
C + CI + C+G KDC DGSDE++C P+ +S+C+ C DGT D
Sbjct: 95 CANGRCINKKWRCDGMKDCADGSDESTCGEGTCRPDEWHCIGTSRCIPLSRVC--DGTND 152
Score = 41.1 bits (92), Expect = 9e-04
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 9/87 (10%)
Frame = +1
Query: 367 CQDGFLAC-GDSTCIERGLFCNGEKDCGDGSDEN---SCDIDNDPNRAPPCDSSQCVLPD 534
C +C S C+ C+GE DCGDGSDE+ +C+ C + C+ +
Sbjct: 2414 CTQSEYSCRSTSRCVPLAFVCDGENDCGDGSDESEEQNCERATCDVTQFRCKTGTCITRE 2473
Query: 535 CFCSE-----DGTVDPRQLTRQRCPSN 600
C DG+ D +Q CP++
Sbjct: 2474 WRCDHQDDCGDGS-DEQQCVNYTCPNH 2499
Score = 40.7 bits (91), Expect = 0.001
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +1
Query: 367 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENS 468
C AC + CI L C+G+ DCGD SDE +
Sbjct: 2370 CTGAQFACDNGRCISTRLLCDGDNDCGDNSDETT 2403
Score = 40.3 bits (90), Expect = 0.001
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +1
Query: 367 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 471
C C + C R C+G DCGDGSDE C
Sbjct: 910 CSASMFRCANGQCKPRDWVCDGFDDCGDGSDEKGC 944
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Frame = +1
Query: 367 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENS--CDIDNDPNRAPPCDSSQCVLPDCF 540
C C CI R C+G+ DCGD SDE + C + +A +C+ +
Sbjct: 3046 CTADQFRCPSGRCISRDWLCDGDNDCGDSSDEKAGECHVTCPAGQARCATGRRCIPSEWR 3105
Query: 541 CSEDGTVD 564
C DG D
Sbjct: 3106 C--DGESD 3111
Score = 39.5 bits (88), Expect = 0.003
Identities = 28/86 (32%), Positives = 34/86 (39%), Gaps = 5/86 (5%)
Frame = +1
Query: 358 EPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSSQCVLPD- 534
E C C + C+ C+GE DCGD SDE C C S +P
Sbjct: 2245 EVTCPAHEFTCPNGRCVSYDFLCDGEDDCGDFSDELRCPPTTCVPGQVKCGSKNLCIPSS 2304
Query: 535 --CFCSED--GTVDPRQLTRQRCPSN 600
C S+D D RQ R+R P N
Sbjct: 2305 WLCDGSDDCGDGWDERQDCRER-PCN 2329
Score = 36.3 bits (80), Expect = 0.024
Identities = 38/121 (31%), Positives = 49/121 (40%), Gaps = 5/121 (4%)
Frame = +1
Query: 178 GEGDNCRDVIQCTASGIQAIRCPAGLFFDIEKQTC---DWK-DAVKNCKLKNKERKIKPL 345
GE D C D+ S A C L F C W+ D +K+C + E
Sbjct: 68 GEND-CGDMSD-EPSNCSAHICDPKLEFQCANGRCINKKWRCDGMKDCADGSDESTCG-- 123
Query: 346 LYTEEPLCQ-DGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSSQC 522
E C+ D + G S CI C+G DCGD DE S +D D + C S +C
Sbjct: 124 ----EGTCRPDEWHCIGTSRCIPLSRVCDGTNDCGDNYDEGSHCLDLDCKK-KNC-SQRC 177
Query: 523 V 525
V
Sbjct: 178 V 178
Score = 35.9 bits (79), Expect = 0.032
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +1
Query: 361 PLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDEN 465
P C G C + CI C+GE DC D SDE+
Sbjct: 823 PPCSAGKFTCKNGHCISLRWKCDGENDCVDNSDED 857
Score = 35.9 bits (79), Expect = 0.032
Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 3/69 (4%)
Frame = +1
Query: 355 EEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDE-NSCDIDNDPNRAP--PCDSSQCV 525
E P C C C+ C+G+ DC D SDE C N CD+ +C+
Sbjct: 2325 ERP-CNVSEFRCTSGECVPASWRCDGDNDCTDKSDEPTDCQRSNATCTGAQFACDNGRCI 2383
Query: 526 LPDCFCSED 552
C D
Sbjct: 2384 STRLLCDGD 2392
Score = 35.1 bits (77), Expect = 0.056
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Frame = +1
Query: 364 LCQDGFLACGDST-CIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPP----CDSSQCVL 528
+C+ G C D+ CI C+G C G DE++C N+ P CD+ +CV
Sbjct: 2965 VCKPGTYQCADNRKCISVLEVCDGIPSCPAGDDESNC---GSVNQCAPYHFRCDNFRCVY 3021
Query: 529 PDCFCSEDGTVDPRQLTRQR 588
C DG D R + +R
Sbjct: 3022 RSRVC--DGIDDCRDGSDER 3039
Score = 32.7 bits (71), Expect = 0.30
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 397 STCIERGLFCNGEKDCGDGSDENSC 471
S CI C+ + DCGD SDE +C
Sbjct: 1058 SRCIPLRFVCDADDDCGDRSDERNC 1082
Score = 31.9 bits (69), Expect = 0.52
Identities = 18/64 (28%), Positives = 25/64 (39%)
Frame = +1
Query: 292 DAVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 471
D V +C K+ E + C+ C + C+ C+ DCGD SDE C
Sbjct: 3307 DGVYHCTDKSDEAPYRSC--PARVACRKDQFKCLNRRCVPVRAVCDSNDDCGDISDELQC 3364
Query: 472 DIDN 483
N
Sbjct: 3365 PSTN 3368
Score = 31.5 bits (68), Expect = 0.69
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +1
Query: 373 DGFLACGDSTCIERGLFCNGEKDCGDGSDEN-SCDID 480
D + S CI + C+G DC D SDE C +D
Sbjct: 1130 DRWRCSNTSRCIAKSQVCDGRVDCPDASDEGPGCGLD 1166
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 364 LCQDGFLACGDSTCIERGLFCNGEKDCGDGSDE 462
+C++ C ++ CI + C+G C D SDE
Sbjct: 3286 ICRNSHFRCDNNKCIPKWNVCDGVYHCTDKSDE 3318
>SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45)
Length = 622
Score = 52.0 bits (119), Expect = 5e-07
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Frame = +1
Query: 367 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSSQCVLPDCFCS 546
C + C + C++RGL C+G+K C DGSDE C P+ C S +C+ C+
Sbjct: 183 CLEDEFGCENGQCVKRGLLCDGDKACLDGSDEKHCSC---PSNMFLCPSGECIPTTALCN 239
Query: 547 EDG----TVDPRQLTRQRCPSND 603
+ D R C N+
Sbjct: 240 NENDCSDNADERNCQYANCSLNN 262
>SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 921
Score = 49.2 bits (112), Expect = 3e-06
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Frame = +1
Query: 373 DGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSSQCVLPDCFCSE- 549
D L C + C ++ +C+G+ DC DGSDE +C +P P ++ C L + C+
Sbjct: 226 DKQLRCDNGRCEDKRWWCDGQDDCNDGSDEKNCSASANPT---PTNAQGCKLNNGGCAHI 282
Query: 550 --DGTVDPRQLTRQRCPSNDHYH 612
+ T+ +T+ +C + H H
Sbjct: 283 CAERTIRGHVITKCQCRAGYHLH 305
>SB_5319| Best HMM Match : Ldl_recept_a (HMM E-Value=7.56701e-44)
Length = 212
Score = 49.2 bits (112), Expect = 3e-06
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Frame = +1
Query: 367 CQDGFLACGDST-CIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPC-DSSQCVLPDCF 540
C+ AC + CI+R C+GE DCGD SDE C +++ N C ++S+C+
Sbjct: 114 CKPFEFACANGRHCIQRKWICDGENDCGDRSDEVDCGLESCGNDRWRCSNTSRCIAKSQV 173
Query: 541 CSEDGTVD 564
C DG VD
Sbjct: 174 C--DGRVD 179
Score = 32.7 bits (71), Expect = 0.30
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 397 STCIERGLFCNGEKDCGDGSDENSC 471
S CI C+ + DCGD SDE +C
Sbjct: 85 SRCIPLRFVCDADDDCGDRSDERNC 109
Score = 31.5 bits (68), Expect = 0.69
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +1
Query: 373 DGFLACGDSTCIERGLFCNGEKDCGDGSDEN-SCDID 480
D + S CI + C+G DC D SDE C +D
Sbjct: 157 DRWRCSNTSRCIAKSQVCDGRVDCPDASDEGPGCGLD 193
>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
Length = 4272
Score = 48.4 bits (110), Expect = 6e-06
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +1
Query: 361 PLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 471
P+CQ G C +CI+ G C+ DCGD SDEN+C
Sbjct: 2091 PMCQYGQFRCARGSCIDTGRVCDFTDDCGDNSDENNC 2127
Score = 43.6 bits (98), Expect = 2e-04
Identities = 18/41 (43%), Positives = 22/41 (53%)
Frame = +1
Query: 361 PLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDN 483
P C G C D +CI + L C+ + DC DG DE SC N
Sbjct: 2244 PPCPFGLFRCTDGSCIMQSLRCDYQNDCSDGLDEASCGTCN 2284
Score = 41.1 bits (92), Expect = 9e-04
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = +1
Query: 340 PLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 471
P T P C G C + CI C+ +KDC DGSDE +C
Sbjct: 2541 PPTSTPPPGCNSGEHRCSNGQCINAIQVCDFKKDCSDGSDEATC 2584
Score = 38.3 bits (85), Expect = 0.006
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 376 GFLACGDSTCIERGLFCNGEKDCGDGSDENSC 471
G++ C + CI++ C+ DCGD SDE C
Sbjct: 3207 GYVKCTNGGCIQKSKLCDFTDDCGDNSDEGRC 3238
Score = 33.9 bits (74), Expect = 0.13
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +1
Query: 364 LCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDND 486
+C C +C C+ DCGD SDE SC N+
Sbjct: 3619 VCTRSQFRCTRGSCTSSDNVCDFSDDCGDSSDERSCSSYNN 3659
Score = 32.7 bits (71), Expect = 0.30
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = +1
Query: 295 AVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDC--GDGSDENS 468
AV + KL+N KPL T C C CI + C+ + DC D SDE+
Sbjct: 4041 AVDDVKLEN----CKPLDVTRP--CNTDEFKCSRGGCIPKSYLCDYQADCMFNDLSDESK 4094
Query: 469 CD 474
CD
Sbjct: 4095 CD 4096
Score = 31.5 bits (68), Expect = 0.69
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 382 LACGDSTCIERGLFCNGEKDCGDGSDENSC 471
+A G + CI C+ K+C DGSDE +C
Sbjct: 3855 VAEGPNACILSTQVCDFSKNCKDGSDEKNC 3884
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +1
Query: 394 DSTCIERGLFCNGEKDCGDGSDENSC 471
D CI C+ DC DGSDE SC
Sbjct: 3435 DGKCIPLTSVCDFNVDCLDGSDERSC 3460
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +1
Query: 367 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENS 468
C C CI C+ E DC DGS+E +
Sbjct: 2783 CSSNQFRCDSGHCISSSSKCDFETDCCDGSEERN 2816
>SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1288
Score = 47.6 bits (108), Expect = 1e-05
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Frame = +1
Query: 367 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSSQCVLPDCFCS 546
C + + CG+ C+ + C+ + DCGDG+DE +C C +C+L C
Sbjct: 667 CSENEITCGNGICVVKRWVCDQDDDCGDGTDELNCAPHTCRPNEFTCADKRCILSRWRC- 725
Query: 547 EDGTVDPRQLTRQ-RCPSNDHY 609
DG D + + CP++ Y
Sbjct: 726 -DGDRDCADNSDEINCPNSSQY 746
Score = 43.6 bits (98), Expect = 2e-04
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +1
Query: 367 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSS--QCVLPDC 537
C+ C D CI C+G++DC D SDE +C PN + C SS QC +C
Sbjct: 706 CRPNEFTCADKRCILSRWRCDGDRDCADNSDEINC-----PNSSQYCKSSEYQCSTGEC 759
Score = 41.5 bits (93), Expect = 6e-04
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Frame = +1
Query: 352 TEEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC-DIDNDPNRAPPCDSSQCVL 528
++E + F CI C+GE DCGD SDE +C +P+ C + +C+
Sbjct: 582 SQEAFLNNEFTCVNTQKCIAATWKCDGEDDCGDNSDEINCPKATCNPDTQFRCTNGRCIP 641
Query: 529 PDCFCSEDGTVDPRQLTRQRC 591
C +D R C
Sbjct: 642 RRWVCDKDDDCHDGSDERNSC 662
Score = 39.5 bits (88), Expect = 0.003
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Frame = +1
Query: 367 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAP----PCDSS-QCVLP 531
C+ C CI + C+GE DC + SDEN+C P+ C SS QC+
Sbjct: 747 CKSSEYQCSTGECIHKSWVCDGEFDCLNKSDENNCP-TKPPSICKDGEFQCGSSKQCIPE 805
Query: 532 DCFCSEDGTVD 564
C DG+VD
Sbjct: 806 SKVC--DGSVD 814
Score = 39.5 bits (88), Expect = 0.003
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = +1
Query: 352 TEEP-LCQDGFLACGDST-CIERGLFCNGEKDCGDGSDE-NSCDIDNDPNRAPPC 507
T+ P +C+DG CG S CI C+G DC + +DE ++C I+ + PC
Sbjct: 783 TKPPSICKDGEFQCGSSKQCIPESKVCDGSVDCTNSADEPDNCFINECKDNNGPC 837
>SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 628
Score = 46.4 bits (105), Expect = 2e-05
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +1
Query: 367 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 471
C G +C + CI R C+ + DCGDGSDE +C
Sbjct: 50 CNSGQFSCSNGRCISRSWVCDRDNDCGDGSDERNC 84
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +1
Query: 367 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDE-NSCDIDNDPNRAPPCDSSQCVLPDCFC 543
C C + CI C+G+ DCGD SDE SC + + C + +C+ C
Sbjct: 10 CPSNRFRCNNGRCIPMSWRCDGDNDCGDMSDEPPSCSGRSCNSGQFSCSNGRCISRSWVC 69
Query: 544 SED 552
D
Sbjct: 70 DRD 72
Score = 39.5 bits (88), Expect = 0.003
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +1
Query: 367 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDP 489
C+ +C + C+ L C+G DCGD SDE SC+ P
Sbjct: 103 CRSWEFSCLNGRCVFYRLVCDGVDDCGDSSDEMSCNATATP 143
Score = 38.7 bits (86), Expect = 0.005
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +1
Query: 388 CGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAP 501
C + C+ C+G+ DCGD SDE C P P
Sbjct: 156 CANRRCVYNSQRCDGQNDCGDWSDETGCSTPPIPTTCP 193
>SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08)
Length = 893
Score = 45.2 bits (102), Expect = 5e-05
Identities = 18/35 (51%), Positives = 26/35 (74%)
Frame = +2
Query: 560 LIPGNLPARDVPQMITITFDDAINNNNIELYKEIF 664
L+PG L +++PQMI +TFDDAIN +Y++IF
Sbjct: 585 LVPGGLNPKEIPQMIMLTFDDAINGQVYPVYQKIF 619
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +3
Query: 654 KRYFNGKRKNPNGCDFK 704
++ FNGK KNPNGCD +
Sbjct: 616 QKIFNGK-KNPNGCDIR 631
>SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1112
Score = 45.2 bits (102), Expect = 5e-05
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +1
Query: 367 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAP-PCDSSQCVLPDCFC 543
C C +S C+ C+GE DCGD SDE+ C + CD +C+ C
Sbjct: 343 CPPSDFTCANSQCVPNSFRCDGENDCGDRSDESGCKPTTTCSANEFRCDDGRCITSTFRC 402
Query: 544 SED 552
+
Sbjct: 403 DRE 405
Score = 44.0 bits (99), Expect = 1e-04
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Frame = +1
Query: 388 CGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPP----CDSSQCVLPDCF 540
C + C+ + C+G DCGD SDE++C P PP C +SQCV P+ F
Sbjct: 308 CRNGRCVLKEWLCDGMDDCGDSSDEDNCP-TRPPYTCPPSDFTCANSQCV-PNSF 360
Score = 43.2 bits (97), Expect = 2e-04
Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 1/97 (1%)
Frame = +1
Query: 238 RCPAGLFFDIEKQTC-DWKDAVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIER 414
RC G F + C D D +NC+ + E +C DG + C+ R
Sbjct: 434 RCIPGRFRCDHRSDCLDGSDE-QNCQNVTRPTPPPVKCRKNERMCADG------NGCVHR 486
Query: 415 GLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSSQCV 525
C+GE+DC DGSDE C + C + +C+
Sbjct: 487 RWICDGERDCLDGSDEAGCGTIGCSSDEFTCTNQKCI 523
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = +1
Query: 352 TEEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNR 495
T C C + CI+ C+G DC D SDE +C + P R
Sbjct: 125 TARMTCDPSQHTCNNGQCIKASWLCDGASDCQDNSDEMNCPLTLAPGR 172
Score = 37.1 bits (82), Expect = 0.014
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +1
Query: 367 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDP 489
C C + CI C+G +CGDGSDE C + P
Sbjct: 510 CSSDEFTCTNQKCIPLPQKCDGTDNCGDGSDEKMCPTPSVP 550
Score = 33.9 bits (74), Expect = 0.13
Identities = 19/60 (31%), Positives = 23/60 (38%)
Frame = +1
Query: 292 DAVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 471
D +C ++ E KP C C D CI C+ E DC D SDE C
Sbjct: 363 DGENDCGDRSDESGCKPTT-----TCSANEFRCDDGRCITSTFRCDREFDCTDRSDERGC 417
Score = 31.1 bits (67), Expect = 0.92
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = +1
Query: 364 LCQDGFLACGDST-CIERGLFCNGEKDCGDGSDENSCDIDN 483
+C CG ST CI C+ C G DE +C N
Sbjct: 571 VCPRDHFRCGSSTICIANSKVCDATPHCPHGEDERNCATRN 611
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/41 (34%), Positives = 16/41 (39%)
Frame = +1
Query: 379 FLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAP 501
F CI C+ DC DGSDE +C P P
Sbjct: 427 FTCAFSGRCIPGRFRCDHRSDCLDGSDEQNCQNVTRPTPPP 467
>SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1717
Score = 45.2 bits (102), Expect = 5e-05
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Frame = +1
Query: 295 AVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKD-CGDGSDENSC 471
A+++ ++ ++ P++ C D C + C+ + CNG +D C DGSDE+ C
Sbjct: 635 AIRDIQITTEDCLCTPVIAEPGYKCLDHLFTCNNGECVTKTSRCNGMRDSCVDGSDESGC 694
Query: 472 DIDNDPNRAPPCDSSQCVLPDCFCSEDGTVD 564
+ C S +C+ FC DG D
Sbjct: 695 TCGLHEFQ---CSSGECIEVATFC--DGKKD 720
Score = 44.4 bits (100), Expect = 9e-05
Identities = 16/28 (57%), Positives = 18/28 (64%)
Frame = +1
Query: 388 CGDSTCIERGLFCNGEKDCGDGSDENSC 471
C CIE FC+G+KDCGDG DE C
Sbjct: 703 CSSGECIEVATFCDGKKDCGDGFDETHC 730
>SB_29580| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-38)
Length = 130
Score = 44.4 bits (100), Expect = 9e-05
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Frame = +1
Query: 364 LCQDGFLACGDST-CIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSSQCVLPDCF 540
+C+D CG S CI + C+G+ DC G DE +C P PP +C +
Sbjct: 42 VCRDDQFQCGTSRKCIRKSKICDGKSDCSGGEDEKNCVKPQTPPPTPPL-KPKCRISQRR 100
Query: 541 CSE-DGTVD 564
C G VD
Sbjct: 101 CDNGSGCVD 109
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +1
Query: 271 KQTCDWKDAVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGD-STCIERGLFCNGEKDCG 447
K C + KNC PL +P C+ C + S C++R C+G +DC
Sbjct: 66 KSDCSGGEDEKNCVKPQTPPPTPPL----KPKCRISQRRCDNGSGCVDRMKICDGMRDCA 121
Query: 448 DGSDENSC 471
DGSDE C
Sbjct: 122 DGSDERGC 129
Score = 35.9 bits (79), Expect = 0.032
Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Frame = +1
Query: 367 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSS-QCVLPDCFC 543
C C + CI R C+ E DC D SDE C + C +S +C+ C
Sbjct: 4 CSATEFRCNNGRCITRAFRCDDEDDCLDNSDEQGCSRKVCRDDQFQCGTSRKCIRKSKIC 63
Query: 544 SEDGTVD 564
DG D
Sbjct: 64 --DGKSD 68
>SB_10498| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-07)
Length = 106
Score = 44.0 bits (99), Expect = 1e-04
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +1
Query: 367 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDI 477
C C D TCI+R CNG+ DC D SDE C +
Sbjct: 4 CPGSKYECRDGTCIDRNEHCNGKIDCPDASDEKGCGL 40
>SB_35350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 626
Score = 43.6 bits (98), Expect = 2e-04
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +1
Query: 367 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSS--QCVLPDC 537
C+ C D CI C+G++DC D SDE +C PN + C SS QC +C
Sbjct: 551 CRPNEFTCADKRCILSRWRCDGDRDCADNSDEINC-----PNSSQYCKSSEYQCSTGEC 604
Score = 31.5 bits (68), Expect = 0.69
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 367 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENS 468
C+ C CI + C+GE DC + SDE +
Sbjct: 592 CKSSEYQCSTGECIHKSWVCDGEFDCLNKSDETT 625
>SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17)
Length = 1571
Score = 42.7 bits (96), Expect = 3e-04
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +1
Query: 361 PLCQDGFLACG-DSTCIERGLFCNGEKDCGDGSDENSCDIDN-DPNRAPPCDSSQCVLPD 534
P C +G CG C+ + L CNG+ DC D SDE C I AP + VL D
Sbjct: 724 PGCGNGEFYCGVPGECVPQTLRCNGQMDCRDASDEQDCGIPTVTTTSAPQPTKGKTVLGD 783
Score = 33.9 bits (74), Expect = 0.13
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Frame = +1
Query: 364 LCQDGFLACG-----DSTCIERGLFCNGEKDCG-DGSDENSC 471
LC G+ CG + +CI + L CNG DC G DE+ C
Sbjct: 1529 LCPSGYFYCGTGPKGEISCITKALRCNGIYDCSVTGWDEDGC 1570
>SB_40871| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 279
Score = 42.3 bits (95), Expect = 4e-04
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Frame = +1
Query: 367 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDND---PNRAPPCDSSQCVLPDC 537
C C + C+ R C+ + DCGDGSDE C+ CD+ +C+ +
Sbjct: 118 CSSSQFRCRNGRCVSRSWVCDKDNDCGDGSDEVQCNRAGGGWCGAGRYRCDNDRCIPRNW 177
Query: 538 FCSED 552
C D
Sbjct: 178 VCDRD 182
Score = 42.3 bits (95), Expect = 4e-04
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = +1
Query: 367 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 471
C G C + CI R C+ + DCGDGSDE C
Sbjct: 160 CGAGRYRCDNDRCIPRNWVCDRDNDCGDGSDETGC 194
Score = 38.3 bits (85), Expect = 0.006
Identities = 19/55 (34%), Positives = 25/55 (45%)
Frame = +1
Query: 388 CGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSSQCVLPDCFCSED 552
C + I R C+GE DC DGSDE C + C + +CV C +D
Sbjct: 88 CSNGHLIYRHWRCDGENDCRDGSDETGCGSCSSSQFR--CRNGRCVSRSWVCDKD 140
>SB_21487| Best HMM Match : MAM (HMM E-Value=0)
Length = 874
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/47 (40%), Positives = 22/47 (46%)
Frame = +1
Query: 355 EEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNR 495
E C C CI L C+ KDC DGSDE +C + DP R
Sbjct: 700 ENVSCTPESYKCRSGECISLDLLCDFNKDCLDGSDEENCGV-QDPGR 745
Score = 32.7 bits (71), Expect = 0.30
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +1
Query: 403 CIERGLFCNGEKDCGDGSDENSC 471
CI G C+ DCGDG DE C
Sbjct: 497 CISHGQLCDFVDDCGDGWDETGC 519
>SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)
Length = 1120
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = +1
Query: 343 LLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 471
LL+ C G C S CI L C+G +DC D SDE +C
Sbjct: 15 LLFRVVGCCDPGQFECTSSECIPDVLKCDGSEDCADSSDEINC 57
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 352 TEEPLCQ-DGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 471
T+ +C+ D F + CI C+G DC G+DE C
Sbjct: 58 TKRSMCRVDQFECLIEGDCIPLSKHCDGTWDCQHGTDEMDC 98
>SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1315
Score = 40.7 bits (91), Expect = 0.001
Identities = 25/72 (34%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Frame = +1
Query: 367 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSSQCVLPDCFCS 546
C AC CI+ C+G DC D SDE+ CD + C S CV C
Sbjct: 1155 CLSSKFACESGECIDVVGLCDGTDDCKDASDESRCDHKCSKDEY-QCVSGACVKWPLTCD 1213
Query: 547 -----EDGTVDP 567
EDGT +P
Sbjct: 1214 GKKDCEDGTDEP 1225
Score = 37.9 bits (84), Expect = 0.008
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Frame = +1
Query: 388 CGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSSQCVLPDCFCSEDGTVDP 567
C + C+ R L C+G+ C D SDE +C + C+S +C+ C DGT D
Sbjct: 1126 CVNGQCVSRDLICDGDNACLDFSDEANCKCLSSKF---ACESGECIDVVGLC--DGTDDC 1180
Query: 568 RQLT-RQRCP---SNDHY 609
+ + RC S D Y
Sbjct: 1181 KDASDESRCDHKCSKDEY 1198
>SB_23898| Best HMM Match : Ldl_recept_a (HMM E-Value=1.4013e-45)
Length = 291
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Frame = +1
Query: 367 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDND---PNRAPPCDSSQCVLPDC 537
C C + CI R C+ + DCGDGSDE +C N CD+ +C+ +
Sbjct: 134 CGSTQFRCRNGNCINRNYVCDKDNDCGDGSDEVACSRLNGGWCGAGQYRCDNDRCIPLNW 193
Query: 538 FC 543
C
Sbjct: 194 VC 195
Score = 37.5 bits (83), Expect = 0.011
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +1
Query: 388 CGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSSQCVLPDCFCSED 552
C + C+ R C+G DC DG+DE C C + C+ + C +D
Sbjct: 104 CNNGHCVHRNWKCDGSNDCRDGTDEVGCGKCGSTQFR--CRNGNCINRNYVCDKD 156
Score = 32.3 bits (70), Expect = 0.40
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +1
Query: 367 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 471
C G C + CI C+ DC D SDE+ C
Sbjct: 176 CGAGQYRCDNDRCIPLNWVCDRLNDCHDNSDESGC 210
>SB_31927| Best HMM Match : Ldl_recept_a (HMM E-Value=2.3e-27)
Length = 157
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = +1
Query: 388 CGDSTCIERGLFCNGEKDCGDGSDENSCDIDND---PNRAPPCDSSQCVLPDCFC 543
C + CI R C+ + DCGDGSDE +C N CD+ +C+ + C
Sbjct: 7 CRNGNCINRNYVCDKDNDCGDGSDEVACSRLNGGWCGAGQYRCDNDRCIPLNWVC 61
Score = 32.3 bits (70), Expect = 0.40
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +1
Query: 367 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 471
C G C + CI C+ DC D SDE+ C
Sbjct: 42 CGAGQYRCDNDRCIPLNWVCDRLNDCHDNSDESGC 76
>SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +1
Query: 367 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 471
C+ G C + CI L C+ + DCGD SDE C
Sbjct: 5 CKAGDFRCANGRCISGALVCDLDDDCGDESDERGC 39
>SB_45605| Best HMM Match : MAM (HMM E-Value=2.1e-16)
Length = 187
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +1
Query: 367 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 471
C C +S C++R CN + DCGD SDE C
Sbjct: 145 CLASQYVCANSKCVDRDQLCNFKDDCGDNSDELPC 179
>SB_13199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 39.9 bits (89), Expect = 0.002
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +1
Query: 388 CGDSTCIERGLFCNGEKDCGDGSDENSCD 474
C + C+ R C+G+ DC DGSDE +C+
Sbjct: 28 CENKLCVPRTWLCDGDNDCHDGSDEKNCE 56
Score = 36.3 bits (80), Expect = 0.024
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +1
Query: 388 CGDSTCIERGLFCNGEKDCGDGSDEN 465
CG+STCI + C+G DC D SDE+
Sbjct: 72 CGNSTCIPLTVLCDGLYDCADRSDES 97
>SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1831
Score = 38.7 bits (86), Expect = 0.005
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Frame = +1
Query: 136 CKDKDAGEWFRLVAGEGDNCRDVIQCTASGIQAI-RCPAGLFFDIEKQTCDWKDAVKNCK 312
CK+K G + + +C QC A + RCPAGL + ++K CDW V +
Sbjct: 1238 CKEKPNGHY-----ADPRDCSRFYQCDAFHRAFLHRCPAGLKWSVKKTACDWPRYVDCDR 1292
Query: 313 LKNKERKIKPLLYTEEPLC 369
+ PL T +P C
Sbjct: 1293 TTSTPPTPTPLTPTTKPAC 1311
Score = 37.9 bits (84), Expect = 0.008
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +1
Query: 121 LEQELCKDKDAGEWFRLVAGEGDNCRDVIQCTASGIQAI-RCPAGLFFDIEKQTCDW 288
++ CKDK G + + +C QC A + RCPAGL + ++K TCDW
Sbjct: 988 VDTTFCKDKPNGHY-----ADPMDCSRFYQCDAFHRAFLHRCPAGLKWSVKKTTCDW 1039
Score = 36.7 bits (81), Expect = 0.018
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +1
Query: 121 LEQELCKDKDAGEWFRLVAGEGDNCRDVIQCTASGIQAI-RCPAGLFFDIEKQTCDW 288
++ CKDK G + + +C QC A + RCPAGL + ++K CDW
Sbjct: 883 VDTTFCKDKPNGHY-----ADPRDCSKFYQCDAFHRAFLHRCPAGLKWSVKKTACDW 934
Score = 36.3 bits (80), Expect = 0.024
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +1
Query: 121 LEQELCKDKDAGEWFRLVAGEGDNCRDVIQCTASGIQAI-RCPAGLFFDIEKQTCDW 288
++ CKDK G + + +C QC A + RCPAGL + ++K CDW
Sbjct: 1133 VDTTFCKDKPNGHY-----ADPRDCSRFYQCDAFHKTFLHRCPAGLKWSVKKTACDW 1184
Score = 32.7 bits (71), Expect = 0.30
Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 1/84 (1%)
Frame = +1
Query: 121 LEQELCKDKDAGEWFRLVAGEGDNCRDVIQCTASGIQAI-RCPAGLFFDIEKQTCDWKDA 297
++ CKDK G + + +C QC A + RC GL + I K TCDW
Sbjct: 778 VDTTFCKDKPNGYY-----ADPRDCSRFYQCDAFHRAFLHRCSPGLKWSITKTTCDWPRN 832
Query: 298 VKNCKLKNKERKIKPLLYTEEPLC 369
V + P T +P C
Sbjct: 833 VDCDRKTPTPPSPTPPTTTPKPAC 856
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +1
Query: 121 LEQELCKDKDAGEWFRLVAGEGDNCRDVIQCTASGIQAI-RCPAGLFFDIEKQTCD 285
++ CKD+ G + + +C QC AS + RCP GL + ++K CD
Sbjct: 1338 VDTTFCKDRPHGHY-----ADPRDCSRFYQCDASHKTFLHRCPDGLKWSVKKTACD 1388
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +1
Query: 190 NCRDVIQCTASGIQAI-RCPAGLFFDIEKQTCDWKDAV 300
+C C S + RCP GL + + K+TCD+ V
Sbjct: 581 DCAQFYFCYGSAESLLSRCPRGLLWSVVKKTCDYPHLV 618
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +1
Query: 121 LEQELCKDKDAGEWFRLVAGEGDNCRDVIQCTASGIQAIR-CPAGLFFDIEKQTCD 285
++ CKDK + + + NC + QC ++ CP GL ++IEK CD
Sbjct: 1449 VDTSFCKDKTSDYYH-----DPRNCSRLYQCDIFHRAFLKSCPHGLKWNIEKNACD 1499
>SB_55149| Best HMM Match : Ldl_recept_a (HMM E-Value=2.6e-23)
Length = 190
Score = 38.3 bits (85), Expect = 0.006
Identities = 21/71 (29%), Positives = 29/71 (40%)
Frame = +1
Query: 379 FLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSSQCVLPDCFCSEDGT 558
F D CI + C+GE DC D SDE C ++ C ++QCV C +
Sbjct: 95 FKCVSDGKCIPKSWRCDGEMDCPDSSDEEGCVNRTCSSKEFNC-NNQCVPLSWKCDGEKD 153
Query: 559 VDPRQLTRQRC 591
P + C
Sbjct: 154 CRPGGFDEEGC 164
>SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1712
Score = 38.3 bits (85), Expect = 0.006
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +1
Query: 355 EEPLCQDGFLACGD--STCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSSQCVL 528
E C+ +++C + CI + C+G DC D SDE C + N+ CD+ QC+
Sbjct: 1303 EPSTCKPNYISCASMKAICIPKMWRCDGMLDCTDKSDEEDCPPCKE-NQF-RCDNGQCID 1360
Query: 529 PDCFCSE 549
D C +
Sbjct: 1361 GDPRCDK 1367
Score = 38.3 bits (85), Expect = 0.006
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = +1
Query: 367 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCD 474
C+ F C CI C+ DCGD SDE CD
Sbjct: 1383 CEPNFFRCNTGKCISARWQCDQLDDCGDNSDEIGCD 1418
Score = 37.9 bits (84), Expect = 0.008
Identities = 19/63 (30%), Positives = 31/63 (49%)
Frame = +1
Query: 361 PLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSSQCVLPDCF 540
P C++ C + CI+ C+ K+C DGSDE C +PN C++ +C+
Sbjct: 1344 PPCKENQFRCDNGQCIDGDPRCDKYKNCTDGSDELGC-ATCEPNFF-RCNTGKCISARWQ 1401
Query: 541 CSE 549
C +
Sbjct: 1402 CDQ 1404
>SB_33423| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-22)
Length = 133
Score = 37.5 bits (83), Expect = 0.011
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +1
Query: 367 CQDGFLACGDST-CIERGLFCNGEKDCGDGSDENSCDIDN 483
C +G AC + C+ + C+ DC DGSDE +C I +
Sbjct: 88 CAEGQFACEKTNKCLAKSSLCDTVHDCDDGSDEKNCPISS 127
>SB_19614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 37.1 bits (82), Expect = 0.014
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = +1
Query: 346 LYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 471
L + E C C + CI+ CN +DC DGSDE SC
Sbjct: 385 LVSSEGPCGPKKFTCQNRQCIDDFKQCNNRQDCRDGSDEISC 426
>SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32)
Length = 1039
Score = 37.1 bits (82), Expect = 0.014
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 367 CQDGFLACGDST-CIERGLFCNGEKDCGDGSDENSCDI 477
C +G AC + C+ + C+ DC DGSDE +C I
Sbjct: 901 CAEGQFACEKTNKCLAKSSLCDTVHDCDDGSDEKNCPI 938
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Frame = +1
Query: 292 DAVKNCKLKNKERKIKPLLYTEEPLC-QDGFLACGDSTCIERGLFCNGEKDCGDGSDENS 468
D V +C + E+ EE C D F + C+ C+ DC D DE++
Sbjct: 922 DTVHDCDDGSDEKNCPISRRDEEFGCGSDKFTCDNGAKCLPLTWLCDSITDCMDSKDEHN 981
Query: 469 C 471
C
Sbjct: 982 C 982
>SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1671
Score = 36.7 bits (81), Expect = 0.018
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = +1
Query: 136 CKDKDAGEWFRLVAGEGDNCRDVIQCTASGIQAIRCPAGLFFDIEKQTCDWKDAVKNCK 312
C++K G++ + NC I C+ CP L FD +K C+W + V NCK
Sbjct: 597 CEEKKNGDY-----ADPSNCNGFITCSNGYAYKRDCPFNLKFDTKKLECEWPNKV-NCK 649
Score = 36.3 bits (80), Expect = 0.024
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 181 EGDNCRDVIQCTASGIQAIRCPAGLFFDIEKQTCDWKDAV 300
+ +NC + C+ I + CP+ L +D K C+W D V
Sbjct: 528 DANNCNGFVMCSNGYIYYMDCPSNLRYDPAKGRCEWADTV 567
Score = 28.3 bits (60), Expect = 6.5
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = +1
Query: 121 LEQELCKDKDAGEWFRLVAGEGDNCRDVIQCTASGIQAIR-CPAGLFFDIEKQTCDWKDA 297
++ C ++ G + + NC I C+ A R CP GL F+ CD+
Sbjct: 311 VDSNFCTERQDGNY-----ADSSNCNLYITCSNGFTIANRHCPTGLAFNEAIGMCDYPSN 365
Query: 298 VKNC 309
V C
Sbjct: 366 VPGC 369
>SB_43823| Best HMM Match : MAM (HMM E-Value=0)
Length = 1724
Score = 36.7 bits (81), Expect = 0.018
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +1
Query: 403 CIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSSQCVLPDCFCSEDGTV 561
C+ R L C+G+ DC D SDE C + NR + C + D FC +
Sbjct: 1356 CLNRTLQCDGKPDCSDYSDEAHCRVRKSINR-----NVVCKVGDWFCGNKSDI 1403
Score = 36.3 bits (80), Expect = 0.024
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +1
Query: 367 CQDGFLACG-DSTCIERGLFCNGEKDCGDGSDENSC 471
CQ C D CI C+GE DC DG DE C
Sbjct: 338 CQSNEFYCSKDDRCINIFWKCDGESDCTDGEDEQGC 373
Score = 34.7 bits (76), Expect = 0.074
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +1
Query: 367 CQDGFLACGDST-CIERGLFCNGEKDCGDGSDENSC 471
C D C S CI+ C+G DC D SDE+ C
Sbjct: 1303 CNDDQFQCRASKICIKSSFVCDGVPDCNDHSDEDDC 1338
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +1
Query: 367 CQDGFLACGDST-CIERGLFCNGEKDCGDGSDEN 465
C + C +S C+++ C+ DCGDG+DE+
Sbjct: 120 CTANEVRCKNSGHCVQQQQVCDFTDDCGDGTDED 153
>SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24)
Length = 652
Score = 36.7 bits (81), Expect = 0.018
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +1
Query: 361 PLCQDGFLACGDS-TCIERGLFCNGEKDCGDGSDEN-SCDIDNDPNRAPPCDSSQC 522
P C G C + CI C+G +DC DG DE C+ID + C S +C
Sbjct: 209 PPCMPGEFKCQSTGRCIPESKVCDGTRDCQDGEDEPLRCNIDECKDHNGHC-SQKC 263
>SB_43556| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-11)
Length = 65
Score = 36.3 bits (80), Expect = 0.024
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 373 DGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPN 492
D C + CI C+ E DCGD SDE +C ++ N
Sbjct: 9 DTSFKCDNGRCISATWVCDTENDCGDNSDEMNCSKYDNKN 48
>SB_43832| Best HMM Match : CBM_14 (HMM E-Value=2.8e-16)
Length = 518
Score = 35.9 bits (79), Expect = 0.032
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +1
Query: 172 VAGEGDNCRDVIQCTASGIQAIRCPAGLFFDIEKQTCDWKDAVK 303
+ E +NC + C CP GL F+ + CDW VK
Sbjct: 465 IYAEKENCYGFVLCGGGIAHKKTCPPGLIFNTDLMVCDWSHEVK 508
>SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1769
Score = 35.9 bits (79), Expect = 0.032
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 563 IPGNLPARDVPQMITITFDDAINNNNIELYKEI 661
+P L + +PQMI +TFDDAIN Y+ +
Sbjct: 1556 VPNGLDPKQIPQMIMLTFDDAINMQVFPFYQTL 1588
>SB_18178| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 489
Score = 35.5 bits (78), Expect = 0.043
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +1
Query: 355 EEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDND 486
+ P + C CI C+G+ DCGD SDE SC ND
Sbjct: 355 DAPCKISSWFKCRSGVCIPPQWICDGKDDCGDRSDE-SCSWIND 397
Score = 33.1 bits (72), Expect = 0.23
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 403 CIERGLFCNGEKDCGDGSDENSCDIDNDPNR 495
CI+ C+G+ +C D SDEN C +P+R
Sbjct: 285 CIDISYKCDGKPECADHSDENDCPPLINPDR 315
>SB_2014| Best HMM Match : MAM (HMM E-Value=0)
Length = 2282
Score = 35.5 bits (78), Expect = 0.043
Identities = 18/61 (29%), Positives = 25/61 (40%)
Frame = +1
Query: 367 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSSQCVLPDCFCS 546
C L C C++ C+G +DC G DE C D N C S C+ C+
Sbjct: 245 CFTNELTCSSGRCVQSINLCDGVRDCEYGLDELRCG-DGCKNSEFLCPDSTCIPWSSTCN 303
Query: 547 E 549
+
Sbjct: 304 Q 304
Score = 32.7 bits (71), Expect = 0.30
Identities = 23/90 (25%), Positives = 34/90 (37%)
Frame = +1
Query: 295 AVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCD 474
A+ + + ++ PL C C CI C+G+ +C D SDE+ C
Sbjct: 185 AIDDIMITTEKCATSPLYAAPGYKCAPYEFQCTSGHCISGSSRCDGDYNCMDRSDEDGCK 244
Query: 475 IDNDPNRAPPCDSSQCVLPDCFCSEDGTVD 564
+ C S +CV C DG D
Sbjct: 245 CFTN---ELTCSSGRCVQSINLC--DGVRD 269
>SB_13694| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 767
Score = 35.5 bits (78), Expect = 0.043
Identities = 20/67 (29%), Positives = 29/67 (43%)
Frame = +1
Query: 121 LEQELCKDKDAGEWFRLVAGEGDNCRDVIQCTASGIQAIRCPAGLFFDIEKQTCDWKDAV 300
+ + CK K GE+ D CR I C CP GL ++ + + CDW V
Sbjct: 71 IHDDFCKYKPDGEY----RDPYDACRGFIHCHNYNASYKPCPGGLLYNEKTKQCDWPRNV 126
Query: 301 KNCKLKN 321
+C + N
Sbjct: 127 -DCPMGN 132
>SB_18810| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 34.7 bits (76), Expect = 0.074
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +1
Query: 367 CQDGFLACGDST-CIERGLFCNGEKDCGDGSDENSC 471
C D C S CI+ C+G DC D SDE+ C
Sbjct: 6 CNDDQFQCRASKICIKSSFVCDGVPDCNDHSDEDDC 41
Score = 32.3 bits (70), Expect = 0.40
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 403 CIERGLFCNGEKDCGDGSDENSC 471
C+ R L C+G+ DC D SDE C
Sbjct: 59 CLNRTLQCDGKPDCSDYSDEAHC 81
>SB_3253| Best HMM Match : Ldl_recept_a (HMM E-Value=0.00064)
Length = 48
Score = 34.3 bits (75), Expect = 0.098
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Frame = +1
Query: 364 LCQDGFLACG-----DSTCIERGLFCNGEKDCG-DGSDENSC 471
LC G+ CG + +CI + L CNG DC G DE+ C
Sbjct: 6 LCPSGYFYCGTGPKGEISCINKALRCNGIYDCSVTGWDEDGC 47
>SB_58073| Best HMM Match : CBM_14 (HMM E-Value=1.4e-17)
Length = 225
Score = 33.9 bits (74), Expect = 0.13
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 187 DNCRDVIQCTASGIQAIRCPAGLFFDIEKQTCDW 288
D C+ I C+ + CPAGL ++ EK+ CDW
Sbjct: 98 DFCKMYIACSNGIAYEMPCPAGLNWNDEKKYCDW 131
>SB_1784| Best HMM Match : CBM_14 (HMM E-Value=7e-18)
Length = 123
Score = 33.1 bits (72), Expect = 0.23
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 187 DNCRDVIQCTASGIQAIRCPAGLFFDIEKQTCDW 288
+NC+ I C+ +CPAGL ++ K+ CDW
Sbjct: 74 ENCKMYITCSNKITYERQCPAGLNWNDAKKWCDW 107
>SB_52148| Best HMM Match : EGF (HMM E-Value=0)
Length = 1055
Score = 32.7 bits (71), Expect = 0.30
Identities = 17/58 (29%), Positives = 21/58 (36%), Gaps = 4/58 (6%)
Frame = +1
Query: 367 CQDGFLACGDSTCIERGLFCNGEKD----CGDGSDENSCDIDNDPNRAPPCDSSQCVL 528
C+ C + CI + C G CDI DP + PC QCVL
Sbjct: 991 CEHAMNTCYSNPCIHGNCLVRDDSSFECICHKGFTGTKCDIRVDPCASSPCAHGQCVL 1048
>SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 530
Score = 32.7 bits (71), Expect = 0.30
Identities = 16/31 (51%), Positives = 18/31 (58%)
Frame = +2
Query: 566 PGNLPARDVPQMITITFDDAINNNNIELYKE 658
PG L PQ+I ITFDD I N E YK+
Sbjct: 49 PGGLSPALTPQIIMITFDDDITVINYEQYKD 79
>SB_28040| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 391
Score = 32.7 bits (71), Expect = 0.30
Identities = 23/76 (30%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Frame = +1
Query: 367 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSSQCVLPDCFCS 546
C C CI C+ + +C D SDE+ C + C S +CV C
Sbjct: 231 CASYEFQCASGHCISGSSRCDSDYNCMDRSDEDGCKCFTN---ELTCSSGRCVPSINLC- 286
Query: 547 EDGTVDPRQ-LTRQRC 591
DG D Q L RC
Sbjct: 287 -DGVKDCEQDLDELRC 301
>SB_22727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 32.7 bits (71), Expect = 0.30
Identities = 23/76 (30%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Frame = +1
Query: 367 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSSQCVLPDCFCS 546
C C CI C+ + +C D SDE+ C + C S +CV C
Sbjct: 275 CASYEFQCTSGHCISGSSRCDSDYNCMDSSDEDGCKCFTN---ELTCSSGRCVPSINLC- 330
Query: 547 EDGTVDPRQ-LTRQRC 591
DG D Q L RC
Sbjct: 331 -DGVKDCEQGLDELRC 345
>SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29)
Length = 339
Score = 32.3 bits (70), Expect = 0.40
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 190 NCRDVIQCTASGIQAIR-CPAGLFFDIEKQTCDW 288
NC QC A + CP+GL + + K TCDW
Sbjct: 128 NCSRFYQCDAFHKAFLHSCPSGLKWSVTKTTCDW 161
>SB_27119| Best HMM Match : CBM_14 (HMM E-Value=4.1e-15)
Length = 220
Score = 32.3 bits (70), Expect = 0.40
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 190 NCRDVIQCTASGIQAIR-CPAGLFFDIEKQTCDW 288
NC QC A + CP+GL + + K TCDW
Sbjct: 35 NCSRFYQCDAFHKAFLHSCPSGLKWSVTKTTCDW 68
>SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14)
Length = 1217
Score = 32.3 bits (70), Expect = 0.40
Identities = 26/88 (29%), Positives = 32/88 (36%), Gaps = 4/88 (4%)
Frame = +1
Query: 367 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSSQCVLPDCFCS 546
C C CI C+ + +C D SDE+ C + C S +CV C
Sbjct: 1104 CASYEFQCASGHCISGSSRCDSDYNCMDRSDEDGCKCFTN---ELTCSSGRCVPSINLC- 1159
Query: 547 EDGTVD-PRQLTRQRC---PSNDHYHLR 618
DG D L RC P HLR
Sbjct: 1160 -DGVKDCEHGLDELRCVRLPDQRTLHLR 1186
>SB_8478| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1033
Score = 31.9 bits (69), Expect = 0.52
Identities = 23/79 (29%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Frame = +1
Query: 367 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSSQCVLPDCFCS 546
C C CI C+ + +C D SDE+ C + C S +CV C
Sbjct: 194 CASYEFQCASGHCISGSSRCDSDYNCMDRSDEDGCKCFTN---ELTCSSGRCVPSINLC- 249
Query: 547 EDGTVD-PRQLTRQRCPSN 600
DG D L RC S+
Sbjct: 250 -DGVKDCEHGLDELRCGSS 267
>SB_20531| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 796
Score = 31.5 bits (68), Expect = 0.69
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +1
Query: 367 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDE 462
C + C C+ C+G DC D SDE
Sbjct: 216 CSEEEFPCASGDCVPLTSVCDGSADCSDSSDE 247
>SB_17635| Best HMM Match : CUB (HMM E-Value=0)
Length = 630
Score = 31.5 bits (68), Expect = 0.69
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 388 CGDSTCIERGLFCNGEKDCGDGSDENSC 471
C + I+ C+G DCGD SDE++C
Sbjct: 424 CDNDNYIQCQWKCDGTDDCGDHSDEDNC 451
>SB_22922| Best HMM Match : DUF1599 (HMM E-Value=4.2)
Length = 119
Score = 31.1 bits (67), Expect = 0.92
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = +1
Query: 433 EKDCGDGSDENSCDIDNDPNRAPPCDSSQCVLPDCFCSEDGTVDPRQLTR 582
E+D D D+ CD +NDP S+ VLP + D ++ +
Sbjct: 32 ERDLRDEDDDEMCDRENDPRNLRRQSSTDNVLPQVEDDNESEADEEEMLK 81
>SB_9656| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-23)
Length = 710
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = -2
Query: 680 FALAVKISLCTIQCCYC*SHHRR***SFEGHLWRVSCRGSTVPSSEQKQSGRTHCEE 510
F L V I C I CCY HR + V +T +S +K GR+ C +
Sbjct: 178 FILVVVIIFCYIMCCYTLRQHRYRLKAIHKSKAYVFSSNNTRSNSNKKHRGRSDCSK 234
>SB_52147| Best HMM Match : EGF (HMM E-Value=0)
Length = 364
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +1
Query: 388 CGDSTCIER--GLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSSQCV 525
C D TCI++ +C +C G SCD D ++ PC+ C+
Sbjct: 142 CNDGTCIQQTGSFYC----ECLAGYTGQSCDTMIDACQSNPCNDGTCI 185
Score = 30.7 bits (66), Expect = 1.2
Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 7/82 (8%)
Frame = +1
Query: 388 CGDSTCIER--GLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSSQCVLPD-----CFCS 546
C D TCI++ +C +C G SCD D ++ PC C+ PD C C
Sbjct: 179 CNDGTCIQQTGSFYC----ECLTGYTGQSCDTMIDACQSNPCVHGTCI-PDGSSFRCSCD 233
Query: 547 EDGTVDPRQLTRQRCPSNDHYH 612
+ + C SN H
Sbjct: 234 AKHVGEKCNIVVNVCLSNPCAH 255
>SB_16878| Best HMM Match : Keratin_B2 (HMM E-Value=0.19)
Length = 413
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = +1
Query: 400 TCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSSQCVL-PDC 537
T I R +C+ + C GS N +N +P CD C + DC
Sbjct: 18 TKIVRAEYCSSDFSCNYGSGRNRICCNNHCTYSPTCDGYSCSMDSDC 64
>SB_34641| Best HMM Match : Mucin (HMM E-Value=4.3)
Length = 199
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2
Query: 98 RRQRKMKAWNKNYARTRTPANGSGWW 175
RR K KAW ART P G+ +W
Sbjct: 44 RRDTKHKAWTTRSARTWVPVTGTPYW 69
>SB_50139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2211
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = +1
Query: 427 NGEKDC-GDGSDENSCDIDNDPNRAPPCDSSQCV--LPDCFCSEDGTVDPRQLT 579
NG KDC GD +E C+ D P + PC V + + D T++ R ++
Sbjct: 472 NGGKDCVGDAKEEKDCNTDKCPPK--PCSPEDIVNKVVEALPKGDATINNRLIS 523
>SB_54415| Best HMM Match : TSP_1 (HMM E-Value=6.8e-21)
Length = 612
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = +1
Query: 427 NGEKDC-GDGSDENSCDIDNDPNRAPPCDSSQCV--LPDCFCSEDGTVDPRQLT 579
NG KDC GD +E C+ D P + PC V + + D T++ R ++
Sbjct: 134 NGGKDCVGDAKEEKDCNTDKCPPK--PCSPEDIVNKVVEALPKGDATINNRLIS 185
>SB_32130| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 446
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = +1
Query: 427 NGEKDC-GDGSDENSCDIDNDPNRAPPCDSSQCV--LPDCFCSEDGTVDPRQLT 579
NG KDC GD +E C+ D P + PC V + + D T++ R ++
Sbjct: 387 NGGKDCVGDAKEEKDCNTDKCPPK--PCSPEDIVNKVVEALPKGDATINNRLIS 438
>SB_14947| Best HMM Match : TSP_1 (HMM E-Value=6.8e-21)
Length = 666
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = +1
Query: 427 NGEKDC-GDGSDENSCDIDNDPNRAPPCDSSQCV--LPDCFCSEDGTVDPRQLT 579
NG KDC GD +E C+ D P + PC V + + D T++ R ++
Sbjct: 119 NGGKDCVGDAKEEKDCNTDKCPPK--PCSPEDIVNKVVEALPKGDATINNRLIS 170
>SB_5403| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 684
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = +1
Query: 427 NGEKDC-GDGSDENSCDIDNDPNRAPPCDSSQCV--LPDCFCSEDGTVDPRQLT 579
NG KDC GD +E C+ D P + PC V + + D T++ R ++
Sbjct: 503 NGGKDCVGDAKEEKDCNTDKCPPK--PCSPEDIVNKVVEALPKGDATINNRLIS 554
>SB_33807| Best HMM Match : RNA_pol (HMM E-Value=2.7e-10)
Length = 469
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Frame = +1
Query: 388 CGDSTCIERGLFCNGEKDCGDGSD---ENSCDIDNDPNRAPPCD 510
C D + G C+G C G D ++SCD+ D + CD
Sbjct: 412 CDDDDSCDVGKDCDGYDSCDVGEDCEGDDSCDVGEDCDGNDSCD 455
>SB_53888| Best HMM Match : TSP_3 (HMM E-Value=9.2e-11)
Length = 1012
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/61 (29%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Frame = +1
Query: 448 DGSDENSCDIDNDPNRAPPCDSSQCVLPDCFCSEDGTVDPRQLTRQRCPSN-DHYHLR*C 624
D + + D+D ++ PPCDS C D T Q P N DH C
Sbjct: 307 DSDHDQTPPRDSDRDQTPPCDSDHDQTSPCDSDHDQTSPCDSDHNQTSPRNSDHDQTSPC 366
Query: 625 D 627
D
Sbjct: 367 D 367
>SB_41869| Best HMM Match : Laminin_EGF (HMM E-Value=9.7e-23)
Length = 198
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Frame = +1
Query: 349 YTEEPLCQDGFLACGDSTCIERGLFCNGE----KDCGDGSDENSCDIDNDPNRAPPC 507
YT +P+ F C +C +R FC+ E DC G+ C++ + + P C
Sbjct: 2 YTRQPMGGTPFDRCVLCSCNDRSRFCHPETGVCTDCKIGTHGYRCELCTNNVQGPEC 58
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Frame = +1
Query: 349 YTEEPLCQDGFLACGDSTCIERGLFCNGE----KDCGDGSDENSCDIDNDPNRAPPC 507
YT +P+ F C +C +R FC+ E DC G+ C++ + + P C
Sbjct: 70 YTRQPMGGTPFDRCVLCSCNDRSRFCHPETGVCTDCKIGTHGYRCELCTNYVQGPEC 126
>SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)
Length = 1706
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Frame = +1
Query: 349 YTEEPLCQDGFLACGDSTCIERGLFCNGE----KDCGDGSDENSCDIDNDPNRAPPC 507
YT +P+ F C +C +R FC+ E DC G+ C++ + + P C
Sbjct: 992 YTRQPMGGTPFDRCVLCSCNDRSRFCHPETGVCTDCKIGTHGYRCELCTNNVQGPEC 1048
>SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)
Length = 2128
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +2
Query: 167 GWWPARATTVATSSSVLPREYKLY-VARPVCSSILRNRPA 283
G+ P T+ A S++P+ L+ V+RP+ SIL+N PA
Sbjct: 794 GYSPKNDTSTAQPVSLIPKHEPLHDVSRPI-RSILKNEPA 832
>SB_50149| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 656
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -1
Query: 84 PPSVT-ISKRAGEQEARGQSSDTGVARHD 1
PP +T +S GEQE G+ D ARHD
Sbjct: 162 PPRITRVSLTVGEQEFIGEGRDKQKARHD 190
>SB_24771| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1387
Score = 28.3 bits (60), Expect = 6.5
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = -1
Query: 396 VAASEEAILTEWFFSVQERLYFTLLVLELTIFHSIFPIAGLFLNIEEQTGRATYSLYSR- 220
V + +LT F SV F L ++ L I P+A EEQ G TY L +R
Sbjct: 1264 VEKKRKNVLTAMFVSVW--FIFGLFLMLLEFSQIISPLAWDRTRSEEQNGNHTYGLPNRY 1321
Query: 219 GST 211
GST
Sbjct: 1322 GST 1324
>SB_21439| Best HMM Match : LicD (HMM E-Value=4.5e-08)
Length = 362
Score = 28.3 bits (60), Expect = 6.5
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +1
Query: 241 CPAGLFFDIEKQTCDWKDA 297
CP+ L+ DIE TC+W++A
Sbjct: 122 CPS-LYIDIEGSTCEWRNA 139
>SB_3455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 587
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = -3
Query: 475 YHKNFHQIHRHSPFRRYRKDRVQCK*SRRKRGSHLDRVV 359
+H NF + P R+++K+ Q S+ +GS ++R++
Sbjct: 179 HHTNFTTVVNFPPTRKHKKNTTQLNHSKPDKGSIVERLL 217
>SB_55039| Best HMM Match : MFS_1 (HMM E-Value=5.3)
Length = 509
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +1
Query: 448 DGSDENSCDIDNDPNRAPPCDSSQCVLPDCFCSEDGTVD 564
DG D++SCD D + D + V D C + G V+
Sbjct: 402 DGGDDSSCDDDGGDDSGCYDDGNGSVFDDEGCDDSGCVN 440
>SB_8216| Best HMM Match : Metallothio_2 (HMM E-Value=0.71)
Length = 628
Score = 27.9 bits (59), Expect = 8.5
Identities = 19/92 (20%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Frame = +1
Query: 265 IEKQTCDWKDAVKNCKLKNKERKIKPLLYTEEPL--CQDG-FLACGDSTCIERGLFCNGE 435
+E+ + +A + +L+ +++++K +E C D + D I++ + NG
Sbjct: 330 LEQVVEEISEAERAKELRREQKRLKKKAKRKEKFKCCPDAEIIEIKDKDPIQKHMCSNGS 389
Query: 436 KDCGDGSDENSCDIDNDPNRAP---PCDSSQC 522
+ +G E SC+ ++D + C+ QC
Sbjct: 390 TEDIEGGHEGSCEEEDDGDSIDTPCSCEDMQC 421
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,188,889
Number of Sequences: 59808
Number of extensions: 493043
Number of successful extensions: 2505
Number of sequences better than 10.0: 77
Number of HSP's better than 10.0 without gapping: 1996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2463
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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