Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0873
         (708 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    26   0.40 
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    23   3.7  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   3.7  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.7  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   5.0  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   6.6  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   8.7  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   8.7  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 25.8 bits (54), Expect = 0.40
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -3

Query: 490 LGRCQYHKNFHQIHRHSPFRRYRKDRVQCK*SRRKRGSHLDRVVLQ 353
           L   + HK+ +   +HS   + RK+  Q +   R++  H DRV  Q
Sbjct: 45  LNSLRNHKSIYH-RQHSKNEQQRKEMEQMREREREQREHSDRVTSQ 89


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -1

Query: 420 KTAFNASRVAASEEAILTEWFFSVQERLYFTL 325
           +TAF   ++ A E    T  + SV ERL   L
Sbjct: 12  RTAFTYEQLVALENKFKTTRYLSVCERLNLAL 43


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 602 ITITFDDAINNNNIELYKEIF*RQAQKPERLR 697
           +T+   D+IN  ++    +IF  Q+ +  RLR
Sbjct: 36  VTVLSIDSINEESMTYVADIFLAQSWRDSRLR 67


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 602 ITITFDDAINNNNIELYKEIF*RQAQKPERLR 697
           +T+   D+I+ N++    +IF  Q  K  RLR
Sbjct: 67  VTVMGLDSIDENSMTYAADIFFAQTWKDNRLR 98


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = -1

Query: 99  LVSLSPPSVTISKRAGEQEARGQSSDTGVARH 4
           L+ L P   ++   +GE  +RG S  +    H
Sbjct: 375 LLGLMPSGSSVHSDSGENNSRGHSGQSSSHHH 406


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 602 ITITFDDAINNNNIELYKEIF*RQAQKPERLRFQR 706
           +TI   DAI+  N++    ++  Q  K ERL F +
Sbjct: 67  LTIASFDAISEVNMDYTITMYLNQYWKDERLAFSQ 101


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 324 LVLELTIFHSIFPIAGLFLNI 262
           +V+ LTI + I  + G+F NI
Sbjct: 39  MVIPLTIIYMIIFVTGIFGNI 59


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -3

Query: 418 DRVQCK*SRRKRGSHLDRVVLQCTREALFYAP 323
           DRV  +   + R   +DR  L C R  + + P
Sbjct: 313 DRVLSELVSKMREMKMDRTELGCLRSIILFNP 344


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -3

Query: 418 DRVQCK*SRRKRGSHLDRVVLQCTREALFYAP 323
           DRV  +   + R   +DR  L C R  + + P
Sbjct: 313 DRVLSELVSKMREMKMDRTELGCLRSIILFNP 344


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,791
Number of Sequences: 438
Number of extensions: 4377
Number of successful extensions: 16
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)