Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0873
         (708 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g70330.1 68414.m08091 equilibrative nucleoside transporter fa...    33   0.25 
At2g01190.1 68415.m00030 octicosapeptide/Phox/Bem1p (PB1) domain...    29   2.3  
At2g17820.1 68415.m02064 histidine kinase 1 99% identical to GP:...    29   3.0  
At1g08890.1 68414.m00989 sugar transporter family protein simila...    29   4.0  
At5g50070.1 68418.m06200 invertase/pectin methylesterase inhibit...    28   5.3  
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k...    28   5.3  
At1g69830.1 68414.m08034 alpha-amylase, putative / 1,4-alpha-D-g...    28   5.3  
At5g12120.1 68418.m01423 ubiquitin-associated (UBA)/TS-N domain-...    28   7.0  
At3g27840.1 68416.m03472 50S ribosomal protein L12-2, chloroplas...    27   9.2  
At1g29790.1 68414.m03642 expressed protein                             27   9.2  

>At1g70330.1 68414.m08091 equilibrative nucleoside transporter
           family protein contains similarity to SWISS-PROT:Q14542
           equilibrative nucleoside transporter 2 (Equilibrative
           nitrobenzylmercaptopurine riboside-insensitive
           nucleoside transporter, Equilibrative NBMPR-insensitive
           nucleoside transporter, Nucleoside transporter, ei-type,
           36 kDa nucleolar protein HNP36, Hydrophobic nucleolar
           protein, 36 kDa, Delayed-early response protein 12)
           [Homo sapiens]
          Length = 450

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 16/68 (23%), Positives = 33/68 (48%)
 Frame = -1

Query: 561 NCAVLGAEAVRKDTLRGIAWRSSIWVVVNITRIFIRSIATVLFAVTEKTAFNASRVAASE 382
           N  ++  ++  K +L G+AWR+++W +V  T++       VL  +   + F         
Sbjct: 267 NEELIREKSEEKGSLTGLAWRTTLWDIV--TKVKSHGFGIVLLYMVTLSIFPGYITEDVH 324

Query: 381 EAILTEWF 358
             +LT+W+
Sbjct: 325 SELLTDWY 332


>At2g01190.1 68415.m00030 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein  Pfam profile PF00564: PB1
           domain
          Length = 720

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +2

Query: 575 LPARDVPQMITITFDDAINNNNIELYKEIF*RQAQKPERLR 697
           LP+ D+  +I++T D+ ++N   E  + I    + KP RLR
Sbjct: 135 LPSEDLDSLISVTTDEDLDNMIEEYDRTISASNSTKPSRLR 175


>At2g17820.1 68415.m02064 histidine kinase 1 99% identical to
            GP:4586626
          Length = 1207

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +1

Query: 409  ERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDS 513
            +RGL CN  ++ G+GSDE+   ++ DP +   C S
Sbjct: 935  KRGL-CNDLRNRGNGSDESHDCLEIDPTQFDTCSS 968


>At1g08890.1 68414.m00989 sugar transporter family protein similar
           to sugar-porter family proteins 1 and 2 [Arabidopsis
           thaliana] GI:14585699, GI:14585701; contains Pfam
           profile PF00083: major facilitator superfamily protein
          Length = 464

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = -2

Query: 335 ILRSLFLSLQFFTASFQSQVCFSISKNKPAGQRIAC---IPEAVHWM 204
           +L+S  +SL FFT +F      ++    P G ++ C   IPE+  W+
Sbjct: 160 LLQSFGISLMFFTGNFFHWRTLALLSAIPCGIQMICLFFIPESPRWL 206


>At5g50070.1 68418.m06200 invertase/pectin methylesterase inhibitor
           family protein low similarity to pollen-specific protein
           Bnm1 [Brassica napus] GI:1857671; contains Pfam profile
           PF04043: Plant invertase/pectin methylesterase inhibitor
          Length = 183

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 295 AVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDS 399
           A K+    N   K +P L T+   CQ+ F++ GDS
Sbjct: 82  AKKSASFANGAAKKEPSLKTQFQTCQEAFVSIGDS 116


>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
           putative 
          Length = 333

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 475 YHKNFHQIHRHSPFRRYRKDRVQC 404
           YH +    H HS  RR  KDR +C
Sbjct: 245 YHSHRSSAHTHSSHRRRSKDREEC 268


>At1g69830.1 68414.m08034 alpha-amylase, putative /
           1,4-alpha-D-glucan glucanohydrolase, putative similar to
           SP|P17859 Alpha-amylase precursor (EC 3.2.1.1)
           (1,4-alpha-D-glucan glucanohydrolase) {Vigna mungo},
           alpha-amylase [Malus x domestica] GI:7532799; contains
           Pfam profile PF00128: Alpha amylase, catalytic domain
          Length = 887

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = +2

Query: 32  WPRASCSPARLLMVTDGGDKLTRRQRKMKAWNKNYARTRTPANGSGWWPARATT 193
           W  A+   A    VT  G   T  Q K + W  +  + + P    GWWP+RA T
Sbjct: 717 WINATSGAAGAFDVTTKGILHTALQ-KCEYWRLSDPKGKPPGV-VGWWPSRAVT 768


>At5g12120.1 68418.m01423 ubiquitin-associated (UBA)/TS-N
           domain-containing protein contains Pfam profile PF00627:
           UBA/TS-N domain
          Length = 619

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 131 NYARTRTPANGSGWWPARATTVATSSSVLP 220
           N + T   A GSGW PA  +  A S+  LP
Sbjct: 421 NASFTGAAAAGSGWHPANRSEAAQSNGYLP 450


>At3g27840.1 68416.m03472 50S ribosomal protein L12-2, chloroplast
           (CL12-B) identical to ribosomal protein L12 GB:X68046
           [Arabidopsis thaliana] (J. Biol. Chem. 269 (10),
           7330-7336 (1994))
          Length = 193

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -2

Query: 299 TASFQSQVCFSISKNK-PAGQRIACIPEAVHWMTSRQLSPS 180
           TAS + Q  F +  N  P G RIA I  A+  MTS  LS S
Sbjct: 117 TASVERQTTFDVVINDVPRGNRIAVIT-AIRAMTSLSLSES 156


>At1g29790.1 68414.m03642 expressed protein
          Length = 378

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = +2

Query: 86  DKLTRRQRKMKAWNKNYARTRTPANGSGWWPARATTVATSSSVLPREYKLYVARPVCSSI 265
           D L R+   ++A   N+  T  P   +    +RA   ++SSS  P+E  +Y      +S 
Sbjct: 50  DHLLRQLHTIRA-AINHLTTHQPDKSTSTSTSRAAVSSSSSSTAPKELLIYSKLSPIASA 108

Query: 266 LRNRP 280
             N P
Sbjct: 109 CHNYP 113


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,064,332
Number of Sequences: 28952
Number of extensions: 329375
Number of successful extensions: 1100
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1099
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)