Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0870
         (553 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0052 + 7827973-7828031,7829012-7829139,7829243-7829305,783...    32   0.26 
12_02_0343 - 17748882-17753396                                         27   7.5  
07_03_1245 + 25154586-25155040,25155519-25155604,25155690-25155733     27   10.0 

>05_03_0052 +
           7827973-7828031,7829012-7829139,7829243-7829305,
           7830323-7830444,7830557-7830672,7830760-7831567,
           7831800-7832528,7832638-7832859,7833089-7833184,
           7833273-7833467,7834303-7834416,7835368-7835651,
           7836216-7836293,7836326-7836449,7836739-7836786
          Length = 1061

 Score = 32.3 bits (70), Expect = 0.26
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 422 QNRVTELNELTGDSVWLHVNSKNNPADLLSRGGARYPI 535
           +N +  L+  +GD  W HV  KN+P D LS    +Y +
Sbjct: 49  ENVIASLDLRSGDIFWRHVIEKNDPVDELSLSLGKYVV 86


>12_02_0343 - 17748882-17753396
          Length = 1504

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +1

Query: 391  HVTSFIKNLCSKSCN*IKRIDRRLSMV-TCK*QE*SC*PAISRGGPVPNS 537
            H+ + I++L    C  ++ +   LS + T K    SC PAIS  G +PNS
Sbjct: 1373 HILTSIEDLEFYCCEKLQSLPAELSQIPTIKTLWISCCPAISSLGNLPNS 1422


>07_03_1245 + 25154586-25155040,25155519-25155604,25155690-25155733
          Length = 194

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +2

Query: 20  QEIAMTWSNFIKTLTHLNELRIPRQIRGSNTQFIELHIFTDASQNAYG 163
           +E A  + NF K +  +NEL I R +R       EL  +TD      G
Sbjct: 83  KEKAHRYENFKKAMKGINELNIKRGMRSPLAAPTELADYTDEEVERLG 130


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,435,694
Number of Sequences: 37544
Number of extensions: 261906
Number of successful extensions: 446
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)