Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0870
         (553 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   4.8  
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              21   8.3  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   8.3  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   8.3  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -2

Query: 384 QPITIVESVQKQVLVNDNFSELIIF 310
           +P+   E+V   +  + NFS L++F
Sbjct: 168 KPVVAEETVDYMLEKSGNFSRLVVF 192


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 6/9 (66%), Positives = 6/9 (66%)
 Frame = +1

Query: 136 YGCIPECIW 162
           YGC   CIW
Sbjct: 68  YGCFLACIW 76


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 138 RMHPRMHMEHVHI 176
           +MH +MH +H H+
Sbjct: 167 QMHHQMHTQHPHM 179


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 77  LRIPRQIRGSNTQFIELHIFTDAS 148
           LR    I G+    I +H+F DAS
Sbjct: 163 LRTRWSISGTVFDLINIHLFHDAS 186


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,476
Number of Sequences: 438
Number of extensions: 3036
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)