Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0870
         (553 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g23560.1 68416.m02964 MATE efflux family protein similar to r...    28   3.6  
At1g05860.1 68414.m00613 expressed protein                             28   4.8  

>At3g23560.1 68416.m02964 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile: PF01554
           uncharacterized membrane protein family
          Length = 477

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +2

Query: 287 LLGARLYKKIINSLKLSFTNTCFWTDSTIVMGWIRMSPHLLK 412
           +LG  L    I SL  S   T FW  +  + G +R  P + K
Sbjct: 116 MLGVHLQSSCIVSLVFSILITIFWFFTESIFGLLRQDPSISK 157


>At1g05860.1 68414.m00613 expressed protein
          Length = 280

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 110 TQFIELHIFTDASQNAYGACAYIRTYNLNTEIT 208
           T + +LHI  D  Q  Y +C Y+     +  IT
Sbjct: 168 TNYCQLHILMDKKQKLYTSCTYVNKRAQSKAIT 200


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,861,115
Number of Sequences: 28952
Number of extensions: 223032
Number of successful extensions: 463
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)